Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48503 * 109.47214 * 270.00247 * 3 2 1 5 5 H 1.48505 * 109.47385 * 29.99831 * 3 2 1 6 6 H 1.48501 * 109.47209 * 149.99956 * 3 2 1 7 7 C 1.37878 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00332 * 187.64087 * 7 2 1 9 9 C 1.50707 * 119.99474 * 7.63458 * 7 2 1 10 10 H 1.08997 * 109.70133 * 26.26172 * 9 7 2 11 11 C 1.53624 * 109.65855 * 146.84818 * 9 7 2 12 12 C 1.53048 * 109.23838 * 174.54941 * 11 9 7 13 13 C 1.53039 * 109.53544 * 298.51151 * 12 11 9 14 14 C 1.53190 * 109.31371 * 61.36953 * 13 12 11 15 15 N 1.46920 * 109.58693 * 265.90087 * 9 7 2 16 16 C 1.34778 * 120.63502 * 6.63060 * 15 9 7 17 17 O 1.21635 * 119.99628 * 4.92214 * 16 15 9 18 18 C 1.47263 * 120.00189 * 184.92033 * 16 15 9 19 19 C 1.35209 * 123.14036 * 172.55591 * 18 16 15 20 20 S 1.70937 * 108.82754 * 180.02562 * 19 18 16 21 21 C 1.70764 * 91.12933 * 0.02562 * 20 19 18 22 22 N 1.28644 * 110.56169 * 359.97438 * 21 20 19 23 23 H 0.97006 * 120.00376 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.63302 * 54.56445 * 11 9 7 25 25 H 1.08993 * 109.46324 * 294.43268 * 11 9 7 26 26 H 1.08996 * 109.45635 * 178.49099 * 12 11 9 27 27 H 1.08996 * 109.45547 * 58.53395 * 12 11 9 28 28 H 1.08994 * 109.50347 * 301.41264 * 13 12 11 29 29 H 1.09004 * 109.49406 * 181.31328 * 13 12 11 30 30 H 1.09003 * 109.59139 * 185.57554 * 14 13 12 31 31 H 1.09000 * 109.59127 * 65.14563 * 14 13 12 32 32 H 1.08006 * 125.58702 * 0.06123 * 19 18 16 33 33 H 1.08006 * 124.72386 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0774 -1.1982 0.1238 9 6 1.2610 -2.4933 -0.1745 10 1 0.3386 -2.3175 -0.7279 11 6 2.1414 -3.4943 -0.9381 12 6 1.4338 -4.8503 -0.9908 13 6 1.2293 -5.3765 0.4316 14 6 0.3438 -4.3991 1.2110 15 7 0.9445 -3.0600 1.1435 16 6 1.1952 -2.3624 2.2692 17 8 1.6041 -1.2191 2.1977 18 6 0.9740 -2.9844 3.5856 19 6 1.3396 -2.4013 4.7494 20 16 0.9136 -3.4354 6.0421 21 6 0.2731 -4.5861 4.9551 22 7 0.3945 -4.1776 3.7413 23 1 -0.4851 0.8401 -0.0004 24 1 3.0988 -3.6031 -0.4285 25 1 2.3082 -3.1313 -1.9522 26 1 2.0433 -5.5562 -1.5550 27 1 0.4657 -4.7360 -1.4785 28 1 2.1952 -5.4676 0.9283 29 1 0.7463 -6.3529 0.3924 30 1 0.2760 -4.7172 2.2513 31 1 -0.6520 -4.3756 0.7683 32 1 1.8213 -1.4395 4.8464 33 1 -0.1719 -5.5262 5.2461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = 16.101756 kcal Electronic energy + Delta-G solvation = -18800.352765 eV Core-core repulsion = 15953.152654 eV Total energy + Delta-G solvation = -2847.200111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.48815 -39.63886 -37.75467 -34.74419 -33.38990 -31.77109 -31.40728 -27.64560 -26.76790 -25.35082 -23.44421 -22.81959 -21.07016 -20.18166 -19.20899 -18.18666 -17.18151 -16.76839 -16.37250 -16.11905 -15.83650 -15.15249 -14.81369 -14.68212 -14.32929 -14.23209 -14.04109 -13.66864 -13.52047 -12.88131 -12.85231 -12.62118 -12.42829 -12.17210 -11.63058 -11.59982 -11.48371 -11.23366 -10.82912 -10.65413 -10.00880 -9.80962 -9.68803 -8.87244 -8.06864 -5.90294 -0.30536 0.43876 0.72413 1.24354 1.33757 1.37762 1.46934 2.48737 2.65019 2.79528 3.29288 3.49033 4.06916 4.17059 4.25442 4.28579 4.33586 4.51989 4.55803 4.74195 4.77652 4.94570 5.10255 5.19127 5.26337 5.33930 5.39142 5.62964 5.68713 5.85807 6.10493 6.42762 6.57368 6.84674 7.24231 7.58650 7.91801 9.04284 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.008845 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.815116 B = 3164.714212 C = 4428.555244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.046 3.954 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.481 4.481 8 H 0.035 0.965 9 C 0.254 3.746 10 H 0.018 0.982 11 C -0.113 4.113 12 C -0.116 4.116 13 C -0.116 4.116 14 C 0.039 3.961 15 N -0.588 5.588 16 C 0.558 3.442 17 O -0.532 6.532 18 C -0.009 4.009 19 C -0.258 4.258 20 S 0.292 5.708 21 C -0.005 4.005 22 N -0.460 5.460 23 H 0.253 0.747 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.031 0.969 32 H 0.173 0.827 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -13.681 11.837 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.154 4.154 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.154 3.846 10 H 0.036 0.964 11 C -0.152 4.152 12 C -0.153 4.153 13 C -0.154 4.154 14 C -0.084 4.084 15 N -0.320 5.320 16 C 0.341 3.659 17 O -0.409 6.409 18 C -0.143 4.143 19 C -0.400 4.400 20 S 0.547 5.453 21 C -0.302 4.302 22 N -0.176 5.176 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.185 0.815 31 H 0.049 0.951 32 H 0.191 0.809 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.112 -13.263 12.409 18.163 hybrid contribution 0.380 1.831 -1.279 2.266 sum 0.492 -11.431 11.130 15.962 Atomic orbital electron populations 1.70056 1.07292 1.26404 1.52200 1.25320 0.95070 1.01581 0.93420 0.85757 0.78634 0.80509 0.77751 1.19494 1.21842 1.20586 1.20874 0.92410 0.91357 1.47242 0.94659 1.19045 0.93883 0.90905 0.80809 0.96371 1.21913 0.98185 0.95661 0.99449 1.21569 1.00237 0.95949 0.97571 1.21777 0.99740 0.98823 0.95081 1.23425 0.94293 0.82244 1.08485 1.48620 1.59825 1.17067 1.06492 1.17851 0.79431 0.85389 0.83196 1.90890 1.46202 1.17752 1.86008 1.21197 1.04170 0.92834 0.96123 1.26708 1.08064 1.07798 0.97435 1.82212 1.49085 1.06649 1.07323 1.29516 1.03063 1.06811 0.90812 1.66431 1.17275 1.11727 1.22147 0.93835 0.94050 0.92267 0.90378 0.92813 0.92989 0.88809 0.81488 0.95058 0.80903 0.73434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.90 12.90 21.45 0.28 -58.63 16 2 C 0.05 2.82 3.89 84.66 0.33 3.15 16 3 Si 0.95 49.89 29.54 68.60 2.03 51.91 16 4 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 6 H -0.28 -14.85 7.11 99.48 0.71 -14.14 16 7 C -0.48 -29.14 5.70 25.60 0.15 -29.00 16 8 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 9 C 0.25 13.74 2.93 44.38 0.13 13.87 16 10 H 0.02 1.12 7.48 -2.39 -0.02 1.10 16 11 C -0.11 -4.98 5.38 30.82 0.17 -4.81 16 12 C -0.12 -3.99 5.88 30.62 0.18 -3.81 16 13 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 14 C 0.04 1.51 6.29 86.36 0.54 2.05 16 15 N -0.59 -29.25 2.97 -802.38 -2.38 -31.63 16 16 C 0.56 28.89 7.55 86.62 0.65 29.54 16 17 O -0.53 -32.01 12.52 -4.14 -0.05 -32.06 16 18 C -0.01 -0.36 6.56 40.56 0.27 -0.09 16 19 C -0.26 -8.31 10.62 67.12 0.71 -7.60 16 20 S 0.29 5.31 22.96 -56.49 -1.30 4.01 16 21 C -0.01 -0.10 12.17 130.71 1.59 1.49 16 22 N -0.46 -14.34 6.64 -193.03 -1.28 -15.62 16 23 H 0.25 15.60 8.31 -92.70 -0.77 14.83 16 24 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.17 5.98 3.45 -87.96 -0.30 5.68 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.17 5.84 8.04 -2.91 -0.02 5.81 16 33 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -79.79 282.05 3.02 -76.77 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 0.82 Total: 4.00 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.90 Total: 1.24 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.38 Total: -105.87 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.06 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.03 Total: 51.91 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.30 Total: 4.01 kcal Total: -79.79 3.02 -76.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.869 kcal (2) G-P(sol) polarization free energy of solvation -79.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds