Wall clock time and date at job start Mon Mar 30 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47150 * 271.67750 * 3 2 1 5 5 H 1.48496 * 109.46814 * 31.67390 * 3 2 1 6 6 H 1.48499 * 109.47544 * 151.67367 * 3 2 1 7 7 C 1.37882 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00060 * 352.38629 * 7 2 1 9 9 C 1.50697 * 119.99983 * 172.37985 * 7 2 1 10 10 H 1.08994 * 109.70522 * 354.47346 * 9 7 2 11 11 C 1.52766 * 109.50965 * 234.35410 * 9 7 2 12 12 C 1.53043 * 109.38319 * 185.70986 * 11 9 7 13 13 C 1.53041 * 109.54087 * 61.24068 * 12 11 9 14 14 C 1.53196 * 109.30838 * 298.63678 * 13 12 11 15 15 N 1.46928 * 108.77741 * 54.63736 * 14 13 12 16 16 C 1.34776 * 120.63212 * 126.36970 * 15 14 13 17 17 O 1.21627 * 119.99975 * 188.64272 * 16 15 14 18 18 C 1.47265 * 119.99918 * 8.64099 * 16 15 14 19 19 C 1.35206 * 123.13946 * 186.59496 * 18 16 15 20 20 S 1.70940 * 108.82809 * 179.72849 * 19 18 16 21 21 C 1.70764 * 91.12857 * 0.02562 * 20 19 18 22 22 N 1.28644 * 110.56189 * 0.02562 * 21 20 19 23 23 H 0.96997 * 119.99445 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.56343 * 65.67650 * 11 9 7 25 25 H 1.09006 * 109.36000 * 305.61644 * 11 9 7 26 26 H 1.09006 * 109.45816 * 301.21864 * 12 11 9 27 27 H 1.09001 * 109.44824 * 181.25698 * 12 11 9 28 28 H 1.08992 * 109.49847 * 178.68749 * 13 12 11 29 29 H 1.08999 * 109.52514 * 58.59951 * 13 12 11 30 30 H 1.09000 * 109.58972 * 294.84094 * 14 13 12 31 31 H 1.09007 * 109.58297 * 174.41775 * 14 13 12 32 32 H 1.08005 * 125.59002 * 359.73555 * 19 18 16 33 33 H 1.08003 * 124.72336 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4613 2.0668 -1.3995 5 1 1.4649 2.6421 0.7352 6 1 3.5641 1.4301 0.6643 7 6 2.0045 -1.1941 -0.0005 8 1 1.4717 -2.1254 0.1230 9 6 3.5015 -1.1998 -0.1736 10 1 3.8514 -0.1886 -0.3810 11 6 3.8772 -2.1161 -1.3368 12 6 5.4009 -2.2322 -1.4203 13 6 5.9392 -2.8464 -0.1261 14 6 5.5878 -1.9330 1.0525 15 7 4.1372 -1.6990 1.0534 16 6 3.4030 -1.9428 2.1569 17 8 2.1888 -1.8972 2.1019 18 6 4.0708 -2.2644 3.4295 19 6 3.4006 -2.6454 4.5402 20 16 4.5275 -2.9326 5.7931 21 6 5.8275 -2.5271 4.7627 22 7 5.3953 -2.2112 3.5929 23 1 -0.4849 0.8401 -0.0004 24 1 3.4924 -1.7003 -2.2680 25 1 3.4456 -3.1036 -1.1728 26 1 5.8335 -1.2414 -1.5595 27 1 5.6707 -2.8679 -2.2637 28 1 7.0220 -2.9503 -0.1955 29 1 5.4887 -3.8271 0.0267 30 1 6.1112 -0.9827 0.9472 31 1 5.8810 -2.4125 1.9865 32 1 2.3289 -2.7511 4.6225 33 1 6.8678 -2.5339 5.0529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:11 Heat of formation + Delta-G solvation = 12.791483 kcal Electronic energy + Delta-G solvation = -18729.959874 eV Core-core repulsion = 15882.616218 eV Total energy + Delta-G solvation = -2847.343655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 5.18 seconds Orbital eigenvalues (eV) -41.62536 -39.82732 -37.98856 -34.80772 -33.58183 -32.25394 -31.46237 -27.91172 -26.81359 -25.37859 -23.52228 -22.69728 -21.29534 -20.22776 -19.29464 -18.74891 -17.25692 -16.83017 -16.34668 -16.28287 -15.91463 -15.35239 -14.95725 -14.56536 -14.51015 -14.34902 -14.18993 -14.00272 -13.75387 -12.93237 -12.91269 -12.74594 -12.58490 -11.99824 -11.73058 -11.68303 -11.51971 -11.21280 -10.87733 -10.68646 -10.31741 -10.04576 -9.84200 -9.15984 -8.19701 -6.02698 -0.36536 0.39506 0.70077 1.14365 1.22723 1.27886 1.35617 2.32183 2.38376 2.57900 3.23485 3.29762 3.96997 4.09096 4.20047 4.22167 4.25986 4.40433 4.47302 4.58903 4.73341 4.78829 5.00389 5.11269 5.13280 5.26678 5.27966 5.41777 5.52807 5.59788 6.05181 6.36160 6.49154 6.77946 6.96661 7.38439 7.64584 8.99475 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.008357 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.275304 B = 3349.633910 C = 4216.265193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.931 3.069 4 H -0.254 1.254 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.029 0.971 9 C 0.227 3.773 10 H 0.035 0.965 11 C -0.114 4.114 12 C -0.117 4.117 13 C -0.124 4.124 14 C 0.068 3.932 15 N -0.600 5.600 16 C 0.556 3.444 17 O -0.535 6.535 18 C -0.013 4.013 19 C -0.255 4.255 20 S 0.294 5.706 21 C -0.004 4.004 22 N -0.460 5.460 23 H 0.259 0.741 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.819 -6.111 10.478 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.756 3.244 4 H -0.179 1.179 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.047 0.953 9 C 0.126 3.874 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.162 4.162 14 C -0.055 4.055 15 N -0.332 5.332 16 C 0.340 3.660 17 O -0.411 6.411 18 C -0.147 4.147 19 C -0.397 4.397 20 S 0.549 5.451 21 C -0.301 4.301 22 N -0.176 5.176 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.190 0.810 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 18.369 -6.125 11.039 22.289 hybrid contribution -1.146 1.149 -1.027 1.921 sum 17.223 -4.976 10.012 20.534 Atomic orbital electron populations 1.70043 1.07971 1.27026 1.54198 1.25719 0.95501 1.01912 0.95846 0.85957 0.78848 0.80169 0.79403 1.17907 1.21837 1.18799 1.20893 0.90422 0.93371 1.43632 0.95292 1.19417 0.91534 0.93494 0.82979 0.94719 1.21791 0.96709 0.99006 0.97824 1.21608 0.93834 1.01542 0.98447 1.21884 1.01914 0.98162 0.94208 1.22920 0.79122 1.00014 1.03412 1.48655 1.08935 1.63728 1.11903 1.18004 0.86344 0.78370 0.83272 1.91019 1.14596 1.50973 1.84537 1.20905 0.89520 1.07812 0.96494 1.26772 1.07880 1.06651 0.98415 1.82304 0.93613 1.57611 1.11545 1.29457 1.07673 1.01468 0.91529 1.66875 1.10827 1.18085 1.21774 0.93178 0.91840 0.94282 0.91617 0.90145 0.88002 0.93190 0.92821 0.83753 0.80974 0.73364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.61 13.96 21.45 0.30 -64.31 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.93 48.41 27.08 68.60 1.86 50.27 16 4 H -0.25 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.26 -13.23 6.64 99.48 0.66 -12.57 16 7 C -0.44 -27.73 5.78 25.60 0.15 -27.58 16 8 H 0.03 2.08 7.30 -2.91 -0.02 2.06 16 9 C 0.23 11.41 2.76 44.09 0.12 11.53 16 10 H 0.04 1.76 4.80 -2.39 -0.01 1.75 16 11 C -0.11 -4.81 5.33 30.53 0.16 -4.65 16 12 C -0.12 -3.60 5.89 30.62 0.18 -3.42 16 13 C -0.12 -3.53 6.08 30.67 0.19 -3.35 16 14 C 0.07 2.31 5.99 86.36 0.52 2.82 16 15 N -0.60 -27.51 2.98 -803.99 -2.39 -29.90 16 16 C 0.56 27.44 7.57 86.62 0.66 28.09 16 17 O -0.54 -32.30 13.16 -4.12 -0.05 -32.36 16 18 C -0.01 -0.48 6.48 40.56 0.26 -0.21 16 19 C -0.25 -7.86 10.62 67.12 0.71 -7.14 16 20 S 0.29 4.94 22.96 -56.49 -1.30 3.64 16 21 C 0.00 -0.07 12.17 130.71 1.59 1.52 16 22 N -0.46 -13.16 6.78 -193.03 -1.31 -14.47 16 23 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 24 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.15 4.54 4.08 -43.68 -0.18 4.36 16 32 H 0.17 5.69 8.04 -2.91 -0.02 5.67 16 33 H 0.25 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -85.31 279.49 3.01 -82.29 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.91 Total: 6.39 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.00 Total: -1.55 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.40 Total: -108.68 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.05 Total: -32.36 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.86 Total: 50.27 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.30 Total: 3.64 kcal Total: -85.31 3.01 -82.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.084 kcal (2) G-P(sol) polarization free energy of solvation -85.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.18 seconds