Wall clock time and date at job start Mon Mar 30 2020 08:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99739 * 2 1 4 4 H 1.48492 * 109.47176 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46841 * 119.99732 * 3 2 1 6 6 H 1.48495 * 109.46632 * 239.99658 * 3 2 1 7 7 C 1.37876 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99605 * 13.96639 * 7 2 1 9 9 C 1.50695 * 120.00008 * 193.95903 * 7 2 1 10 10 H 1.09005 * 109.46379 * 305.57662 * 9 7 2 11 11 C 1.53034 * 109.46263 * 185.59619 * 9 7 2 12 12 C 1.53120 * 109.28025 * 180.80418 * 11 9 7 13 13 H 1.09003 * 109.52341 * 297.75130 * 12 11 9 14 14 C 1.50699 * 109.52142 * 177.56091 * 12 11 9 15 15 C 1.38654 * 120.79668 * 299.99940 * 14 12 11 16 16 C 1.38189 * 119.17520 * 179.97438 * 15 14 12 17 17 N 1.31875 * 120.80054 * 359.97438 * 16 15 14 18 18 C 1.31855 * 121.73456 * 0.02562 * 17 16 15 19 19 C 1.38349 * 120.74184 * 359.74013 * 18 17 16 20 20 Cl 1.73600 * 120.43041 * 180.28656 * 19 18 17 21 21 C 1.53119 * 109.15662 * 57.65744 * 12 11 9 22 22 C 1.53037 * 109.27698 * 302.34052 * 21 12 11 23 23 N 1.46847 * 109.51298 * 59.19241 * 22 21 12 24 24 H 0.97001 * 120.00309 * 174.79111 * 1 2 3 25 25 H 1.09001 * 109.50612 * 300.74881 * 11 9 7 26 26 H 1.09004 * 109.50228 * 60.82651 * 11 9 7 27 27 H 1.08002 * 120.40809 * 359.95437 * 15 14 12 28 28 H 1.08001 * 119.59658 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.62379 * 179.97438 * 18 17 16 30 30 H 1.08995 * 109.50734 * 62.28583 * 21 12 11 31 31 H 1.09000 * 109.49822 * 182.36836 * 21 12 11 32 32 H 1.09003 * 109.45762 * 179.19478 * 22 21 12 33 33 H 1.08993 * 109.46595 * 299.17503 * 22 21 12 34 34 H 1.00900 * 110.99574 * 174.15097 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4885 -2.1156 -0.2248 9 6 3.4781 -1.2131 0.3154 10 1 4.0003 -0.5237 -0.3482 11 6 4.0245 -2.6282 0.1128 12 6 5.5173 -2.6473 0.4530 13 1 6.0542 -1.9845 -0.2258 14 6 6.0478 -4.0508 0.3130 15 6 5.5283 -5.0855 1.0760 16 6 6.0395 -6.3599 0.9200 17 7 7.0089 -6.5978 0.0583 18 6 7.5276 -5.6395 -0.6841 19 6 7.0637 -4.3398 -0.5866 20 17 7.7474 -3.0857 -1.5733 21 6 5.7102 -2.1687 1.8946 22 6 5.1151 -0.7669 2.0456 23 7 3.6859 -0.8020 1.7097 24 1 -0.4850 -0.8366 -0.0763 25 1 3.4935 -3.3204 0.7661 26 1 3.8836 -2.9274 -0.9259 27 1 4.7342 -4.8976 1.7835 28 1 5.6395 -7.1709 1.5105 29 1 8.3210 -5.8726 -1.3788 30 1 5.2057 -2.8536 2.5761 31 1 6.7743 -2.1400 2.1291 32 1 5.2381 -0.4291 3.0746 33 1 5.6293 -0.0797 1.3738 34 1 3.2495 0.0891 1.8928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259920384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:00 Heat of formation + Delta-G solvation = 17.393078 kcal Electronic energy + Delta-G solvation = -18059.633614 eV Core-core repulsion = 15210.445793 eV Total energy + Delta-G solvation = -2849.187822 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48088 -38.01283 -36.66232 -34.07917 -32.57869 -31.09426 -30.24192 -29.98311 -25.14823 -24.31149 -23.53218 -21.91043 -20.73288 -18.98212 -17.68331 -16.78786 -16.61272 -15.97584 -15.59254 -14.41212 -14.12140 -13.98305 -13.68233 -13.46702 -13.33664 -12.99242 -12.56998 -12.20414 -12.07800 -11.72658 -11.46128 -11.32290 -10.84827 -10.66807 -10.39756 -10.25140 -10.07143 -9.80937 -9.48851 -9.36524 -9.03600 -8.95885 -8.38379 -7.36747 -6.51113 -4.15804 0.86840 1.10380 2.00545 3.20195 3.33034 3.48961 3.60436 4.31914 4.36789 4.49849 4.66775 4.89652 4.98255 5.19794 5.25359 5.35033 5.50820 5.53937 5.60168 5.84550 5.91124 5.98301 6.07828 6.18554 6.27685 6.42261 6.48620 6.51814 6.59045 6.72118 7.09653 7.74388 7.78070 8.30445 8.34890 8.45568 8.83797 9.54249 10.87634 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026338 B = 0.005782 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.853798 B = 4841.809041 C = 5106.952646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 1.051 2.949 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.583 4.583 8 H 0.059 0.941 9 C 0.189 3.811 10 H -0.009 1.009 11 C -0.080 4.080 12 C -0.067 4.067 13 H 0.084 0.916 14 C -0.008 4.008 15 C -0.153 4.153 16 C 0.099 3.901 17 N -0.481 5.481 18 C 0.110 3.890 19 C -0.093 4.093 20 Cl -0.055 7.055 21 C -0.098 4.098 22 C 0.051 3.949 23 N -0.690 5.690 24 H 0.269 0.731 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.146 0.854 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.036 -7.344 1.420 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.880 3.120 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.622 4.622 8 H 0.078 0.922 9 C 0.082 3.918 10 H 0.008 0.992 11 C -0.118 4.118 12 C -0.086 4.086 13 H 0.102 0.898 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.057 4.057 17 N -0.190 5.190 18 C -0.048 4.048 19 C -0.122 4.122 20 Cl -0.026 7.026 21 C -0.136 4.136 22 C -0.079 4.079 23 N -0.327 5.327 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.178 0.822 29 H 0.178 0.822 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.101 -7.066 1.554 16.745 hybrid contribution 0.217 0.044 -0.551 0.594 sum 15.318 -7.022 1.003 16.881 Atomic orbital electron populations 1.70816 1.06809 1.30991 1.45109 1.25759 0.96382 1.02308 0.93169 0.83922 0.75241 0.76276 0.76564 1.20702 1.21079 1.21044 1.21955 0.93023 0.95789 1.51443 0.92244 1.19343 0.96866 0.91181 0.84449 0.99165 1.21518 0.90152 0.99813 1.00343 1.20622 0.99106 0.90083 0.98750 0.89770 1.20465 0.91688 0.97801 0.91716 1.22138 1.01501 0.92746 1.00895 1.22845 0.92102 0.96115 0.94597 1.67794 1.10682 1.34413 1.06099 1.22698 0.98337 0.86651 0.97093 1.22058 0.99868 0.91605 0.98648 1.98366 1.83565 1.52236 1.68464 1.21545 0.99294 0.97812 0.94930 1.21857 0.91679 0.95021 0.99353 1.61100 1.09033 1.35861 1.26722 0.92052 0.91770 0.92640 0.83587 0.82181 0.82197 0.91146 0.92648 0.91979 0.96569 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.70 55.43 0.76 -26.40 16 2 C 0.03 0.84 5.36 -17.82 -0.10 0.74 16 3 Si 1.05 24.57 26.36 -169.99 -4.48 20.09 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.02 5.72 56.52 0.32 -5.70 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.58 -16.02 9.08 -34.44 -0.31 -16.34 16 8 H 0.06 1.76 7.99 -52.49 -0.42 1.34 16 9 C 0.19 4.37 1.90 -68.88 -0.13 4.24 16 10 H -0.01 -0.21 6.87 -51.93 -0.36 -0.57 16 11 C -0.08 -1.59 4.45 -26.65 -0.12 -1.71 16 12 C -0.07 -1.09 2.36 -91.65 -0.22 -1.31 16 13 H 0.08 1.41 6.33 -51.93 -0.33 1.08 16 14 C -0.01 -0.12 4.81 -104.29 -0.50 -0.62 16 15 C -0.15 -1.98 8.79 -39.45 -0.35 -2.33 16 16 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 17 N -0.48 -6.27 10.36 -13.22 -0.14 -6.40 16 18 C 0.11 1.37 10.99 -17.50 -0.19 1.17 16 19 C -0.09 -1.25 6.34 -39.36 -0.25 -1.50 16 20 Cl -0.06 -0.71 27.18 -51.86 -1.41 -2.12 16 21 C -0.10 -1.51 5.23 -26.65 -0.14 -1.65 16 22 C 0.05 0.89 6.55 -3.83 -0.03 0.86 16 23 N -0.69 -14.89 6.46 -107.99 -0.70 -15.59 16 24 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 25 H 0.06 1.29 7.41 -51.93 -0.38 0.91 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.15 1.78 7.23 -52.49 -0.38 1.40 16 28 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.07 1.07 7.39 -51.93 -0.38 0.69 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.34 7.60 5.24 -39.29 -0.21 7.40 16 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -29.55 286.90 -8.39 -37.94 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.23 Total: 5.60 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.52 Total: -17.45 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.08 Total: -48.39 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.48 Total: 20.09 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.41 Total: -2.12 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.55 -8.39 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.337 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds