Wall clock time and date at job start Mon Mar 30 2020 08:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99739 * 2 1 4 4 H 1.48492 * 109.47176 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46841 * 119.99732 * 3 2 1 6 6 H 1.48495 * 109.46632 * 239.99658 * 3 2 1 7 7 C 1.37876 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99605 * 13.96639 * 7 2 1 9 9 C 1.50695 * 120.00008 * 193.95903 * 7 2 1 10 10 H 1.09005 * 109.46379 * 305.57662 * 9 7 2 11 11 C 1.53034 * 109.46263 * 185.59619 * 9 7 2 12 12 C 1.53120 * 109.28025 * 180.80418 * 11 9 7 13 13 H 1.09003 * 109.52341 * 297.75130 * 12 11 9 14 14 C 1.50699 * 109.52142 * 177.56091 * 12 11 9 15 15 C 1.38654 * 120.79668 * 299.99940 * 14 12 11 16 16 C 1.38189 * 119.17520 * 179.97438 * 15 14 12 17 17 N 1.31875 * 120.80054 * 359.97438 * 16 15 14 18 18 C 1.31855 * 121.73456 * 0.02562 * 17 16 15 19 19 C 1.38349 * 120.74184 * 359.74013 * 18 17 16 20 20 Cl 1.73600 * 120.43041 * 180.28656 * 19 18 17 21 21 C 1.53119 * 109.15662 * 57.65744 * 12 11 9 22 22 C 1.53037 * 109.27698 * 302.34052 * 21 12 11 23 23 N 1.46847 * 109.51298 * 59.19241 * 22 21 12 24 24 H 0.97001 * 120.00309 * 174.79111 * 1 2 3 25 25 H 1.09001 * 109.50612 * 300.74881 * 11 9 7 26 26 H 1.09004 * 109.50228 * 60.82651 * 11 9 7 27 27 H 1.08002 * 120.40809 * 359.95437 * 15 14 12 28 28 H 1.08001 * 119.59658 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.62379 * 179.97438 * 18 17 16 30 30 H 1.08995 * 109.50734 * 62.28583 * 21 12 11 31 31 H 1.09000 * 109.49822 * 182.36836 * 21 12 11 32 32 H 1.09003 * 109.45762 * 179.19478 * 22 21 12 33 33 H 1.08993 * 109.46595 * 299.17503 * 22 21 12 34 34 H 1.00900 * 110.99574 * 174.15097 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4885 -2.1156 -0.2248 9 6 3.4781 -1.2131 0.3154 10 1 4.0003 -0.5237 -0.3482 11 6 4.0245 -2.6282 0.1128 12 6 5.5173 -2.6473 0.4530 13 1 6.0542 -1.9845 -0.2258 14 6 6.0478 -4.0508 0.3130 15 6 5.5283 -5.0855 1.0760 16 6 6.0395 -6.3599 0.9200 17 7 7.0089 -6.5978 0.0583 18 6 7.5276 -5.6395 -0.6841 19 6 7.0637 -4.3398 -0.5866 20 17 7.7474 -3.0857 -1.5733 21 6 5.7102 -2.1687 1.8946 22 6 5.1151 -0.7669 2.0456 23 7 3.6859 -0.8020 1.7097 24 1 -0.4850 -0.8366 -0.0763 25 1 3.4935 -3.3204 0.7661 26 1 3.8836 -2.9274 -0.9259 27 1 4.7342 -4.8976 1.7835 28 1 5.6395 -7.1709 1.5105 29 1 8.3210 -5.8726 -1.3788 30 1 5.2057 -2.8536 2.5761 31 1 6.7743 -2.1400 2.1291 32 1 5.2381 -0.4291 3.0746 33 1 5.6293 -0.0797 1.3738 34 1 3.2495 0.0891 1.8928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259920384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:59 Heat of formation + Delta-G solvation = -2.186741 kcal Electronic energy + Delta-G solvation = -18060.482659 eV Core-core repulsion = 15210.445793 eV Total energy + Delta-G solvation = -2850.036866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.52759 -39.46519 -37.66867 -35.60083 -34.40839 -32.05489 -31.93799 -31.28090 -26.91995 -25.69459 -24.55314 -23.23533 -22.30788 -20.47197 -19.71838 -17.92113 -17.67988 -17.31917 -16.82695 -15.66605 -15.50825 -15.44190 -15.14961 -15.02320 -14.74523 -14.36811 -13.99368 -13.60739 -13.22400 -13.07778 -12.99362 -12.64272 -12.35225 -12.25034 -11.88990 -11.74756 -11.70484 -11.31243 -11.09145 -10.61941 -10.51313 -10.41563 -9.97462 -9.06278 -8.75328 -6.41700 -0.09865 0.07268 1.00153 1.33912 1.46094 1.64498 2.41284 2.62721 3.00206 3.36965 3.44237 3.62002 3.69741 3.90425 4.00184 4.09609 4.16981 4.40129 4.43934 4.60357 4.62058 4.69514 4.78216 4.84344 4.97500 4.99203 5.02170 5.15653 5.24740 5.47502 5.50216 5.87552 5.99654 6.47090 6.60980 6.75791 6.78931 7.37936 8.61687 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026338 B = 0.005782 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.853798 B = 4841.809041 C = 5106.952646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.019 4.019 3 Si 1.089 2.911 4 H -0.284 1.284 5 H -0.247 1.247 6 H -0.271 1.271 7 C -0.590 4.590 8 H 0.019 0.981 9 C 0.192 3.808 10 H -0.013 1.013 11 C -0.073 4.073 12 C -0.056 4.056 13 H 0.081 0.919 14 C -0.023 4.023 15 C -0.157 4.157 16 C 0.104 3.896 17 N -0.492 5.492 18 C 0.112 3.888 19 C -0.100 4.100 20 Cl -0.054 7.054 21 C -0.093 4.093 22 C 0.046 3.954 23 N -0.701 5.701 24 H 0.252 0.748 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.151 0.849 28 H 0.191 0.809 29 H 0.184 0.816 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.022 0.978 34 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.809 -7.482 2.323 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.218 4.218 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.172 1.172 6 H -0.197 1.197 7 C -0.629 4.629 8 H 0.037 0.963 9 C 0.084 3.916 10 H 0.004 0.996 11 C -0.111 4.111 12 C -0.074 4.074 13 H 0.099 0.901 14 C -0.032 4.032 15 C -0.177 4.177 16 C -0.051 4.051 17 N -0.201 5.201 18 C -0.046 4.046 19 C -0.129 4.129 20 Cl -0.025 7.025 21 C -0.131 4.131 22 C -0.083 4.083 23 N -0.337 5.337 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.168 0.832 28 H 0.208 0.792 29 H 0.201 0.799 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.040 0.960 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.899 -7.238 2.468 19.464 hybrid contribution -0.656 -0.037 -0.850 1.074 sum 17.243 -7.274 1.618 18.784 Atomic orbital electron populations 1.70952 1.08110 1.29981 1.48164 1.27189 0.96267 1.06140 0.92195 0.83452 0.74772 0.72025 0.78620 1.21017 1.17231 1.19683 1.22189 0.95591 0.94230 1.50870 0.96255 1.19189 0.93853 0.93149 0.85434 0.99556 1.21340 0.93068 0.97431 0.99293 1.20399 0.95988 0.91645 0.99413 0.90051 1.20344 0.92754 0.97038 0.93057 1.22253 1.01605 0.92980 1.00879 1.23309 0.91255 0.96475 0.94089 1.67886 1.11121 1.34632 1.06487 1.23069 0.98446 0.86045 0.96995 1.22128 0.99978 0.92172 0.98586 1.98366 1.83482 1.52234 1.68405 1.21545 1.00857 0.96533 0.94179 1.22054 0.88808 0.96587 1.00832 1.60895 1.12162 1.35559 1.25054 0.93848 0.92691 0.94122 0.83170 0.79220 0.79937 0.90893 0.89888 0.89525 0.95969 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.70 21.45 0.29 -57.99 16 2 C -0.02 -1.10 5.36 84.65 0.45 -0.64 16 3 Si 1.09 49.05 26.36 68.60 1.81 50.86 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.25 -9.62 5.72 99.48 0.57 -9.05 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.59 -33.42 9.08 25.60 0.23 -33.19 16 8 H 0.02 1.20 7.99 -2.91 -0.02 1.18 16 9 C 0.19 8.82 1.90 44.19 0.08 8.91 16 10 H -0.01 -0.60 6.87 -2.38 -0.02 -0.62 16 11 C -0.07 -2.89 4.45 30.65 0.14 -2.75 16 12 C -0.06 -1.72 2.36 -11.46 -0.03 -1.75 16 13 H 0.08 2.56 6.33 -2.39 -0.02 2.54 16 14 C -0.02 -0.63 4.81 -19.65 -0.09 -0.72 16 15 C -0.16 -3.75 8.79 22.36 0.20 -3.55 16 16 C 0.10 2.20 11.18 84.67 0.95 3.14 16 17 N -0.49 -11.52 10.36 -195.75 -2.03 -13.54 16 18 C 0.11 2.50 10.99 84.72 0.93 3.43 16 19 C -0.10 -2.48 6.34 22.42 0.14 -2.34 16 20 Cl -0.05 -1.29 27.18 -2.72 -0.07 -1.36 16 21 C -0.09 -2.59 5.23 30.65 0.16 -2.43 16 22 C 0.05 1.47 6.55 86.33 0.57 2.04 16 23 N -0.70 -29.12 6.46 -495.57 -3.20 -32.32 16 24 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 25 H 0.05 2.24 7.41 -2.39 -0.02 2.22 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.15 3.40 7.23 -2.91 -0.02 3.38 16 28 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.07 2.01 7.39 -2.39 -0.02 1.99 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.33 14.26 5.24 -89.69 -0.47 13.79 16 Total: -1.00 -65.34 286.90 0.99 -64.35 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.47 Total: 19.87 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.73 Total: -29.86 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.94 Total: -103.86 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.81 Total: 50.86 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -65.34 0.99 -64.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.162 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds