Wall clock time and date at job start Mon Mar 30 2020 08:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46660 * 59.99949 * 9 7 2 11 11 C 1.53037 * 109.46135 * 179.97438 * 9 7 2 12 12 C 1.53115 * 109.28080 * 179.19214 * 11 9 7 13 13 H 1.08994 * 109.52594 * 62.25213 * 12 11 9 14 14 C 1.50709 * 109.52382 * 182.37768 * 12 11 9 15 15 C 1.38647 * 120.79540 * 60.00226 * 14 12 11 16 16 C 1.38188 * 119.17571 * 179.97438 * 15 14 12 17 17 N 1.31881 * 120.79713 * 359.97438 * 16 15 14 18 18 C 1.31847 * 121.73799 * 359.97438 * 17 16 15 19 19 C 1.38359 * 120.74152 * 359.74686 * 18 17 16 20 20 Cl 1.73598 * 120.42978 * 180.28904 * 19 18 17 21 21 C 1.53127 * 109.16143 * 302.34472 * 12 11 9 22 22 C 1.53036 * 109.27556 * 57.65328 * 21 12 11 23 23 N 1.46846 * 109.51738 * 300.81697 * 22 21 12 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50319 * 299.13386 * 11 9 7 26 26 H 1.09005 * 109.50290 * 59.24996 * 11 9 7 27 27 H 1.08001 * 120.40934 * 359.94959 * 15 14 12 28 28 H 1.07999 * 119.59929 * 179.97438 * 16 15 14 29 29 H 1.07996 * 119.62928 * 179.97438 * 18 17 16 30 30 H 1.08993 * 109.49947 * 177.59468 * 21 12 11 31 31 H 1.09007 * 109.49898 * 297.71285 * 21 12 11 32 32 H 1.08993 * 109.46340 * 60.83688 * 22 21 12 33 33 H 1.08997 * 109.46096 * 180.80816 * 22 21 12 34 34 H 1.00904 * 111.00473 * 297.65883 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8744 -0.6808 0.8905 11 6 4.0214 -2.6370 -0.0001 12 6 5.5525 -2.6322 -0.0199 13 1 5.9269 -2.1487 0.8824 14 6 6.0599 -4.0500 -0.0790 15 6 5.7248 -4.8803 -1.1376 16 6 6.2092 -6.1743 -1.1583 17 7 6.9815 -6.6218 -0.1875 18 6 7.3219 -5.8614 0.8344 19 6 6.8798 -4.5531 0.9206 20 17 7.3392 -3.5567 2.2659 21 6 6.0368 -1.8622 -1.2517 22 6 5.4684 -0.4417 -1.2153 23 7 4.0013 -0.5006 -1.1982 24 1 -0.4850 0.8401 0.0004 25 1 3.6707 -3.1470 0.8971 26 1 3.6477 -3.1550 -0.8834 27 1 5.0928 -4.5202 -1.9359 28 1 5.9521 -6.8271 -1.9794 29 1 7.9559 -6.2630 1.6110 30 1 7.1258 -1.8186 -1.2485 31 1 5.6947 -2.3680 -2.1547 32 1 5.8220 0.0680 -0.3191 33 1 5.7997 0.1047 -2.0983 34 1 3.6469 -0.9347 -2.0374 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259920386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:03 Heat of formation + Delta-G solvation = 5.234052 kcal Electronic energy + Delta-G solvation = -18080.213412 eV Core-core repulsion = 15230.498336 eV Total energy + Delta-G solvation = -2849.715076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54147 -39.57696 -37.66037 -35.38118 -34.29497 -32.04956 -31.99258 -31.04611 -27.17597 -25.56067 -24.54931 -23.22154 -22.33211 -21.02142 -18.92353 -17.92582 -17.66156 -16.96628 -16.47455 -15.62596 -15.47988 -15.43906 -15.22531 -14.97218 -14.77596 -14.43151 -13.87144 -13.48038 -13.18918 -13.04583 -12.91650 -12.57894 -12.38177 -12.17822 -12.06047 -11.85504 -11.51000 -11.33142 -11.10117 -10.69502 -10.57692 -10.40305 -9.96823 -8.60681 -8.21476 -6.33572 -0.09295 0.08308 1.01297 1.52577 1.59524 1.95932 2.63177 2.63286 3.14990 3.37745 3.44643 3.63321 3.89942 3.91428 4.02180 4.06388 4.22662 4.40256 4.50729 4.61270 4.62179 4.68122 4.76854 4.95464 5.05158 5.09746 5.12867 5.17783 5.30711 5.48683 5.51509 5.69412 6.19608 6.49984 6.79634 6.85214 6.94524 7.45149 8.92069 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.005712 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.898333 B = 4900.947224 C = 5114.812463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.026 3.974 3 Si 0.923 3.077 4 H -0.306 1.306 5 H -0.150 1.150 6 H -0.316 1.316 7 C -0.523 4.523 8 H 0.027 0.973 9 C 0.195 3.805 10 H 0.027 0.973 11 C -0.110 4.110 12 C -0.054 4.054 13 H 0.081 0.919 14 C -0.024 4.024 15 C -0.157 4.157 16 C 0.103 3.897 17 N -0.494 5.494 18 C 0.110 3.890 19 C -0.101 4.101 20 Cl -0.054 7.054 21 C -0.132 4.132 22 C 0.052 3.948 23 N -0.687 5.687 24 H 0.261 0.739 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.154 0.846 28 H 0.191 0.809 29 H 0.181 0.819 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.634 -8.379 -2.586 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.172 4.172 3 Si 0.749 3.251 4 H -0.234 1.234 5 H -0.070 1.070 6 H -0.244 1.244 7 C -0.562 4.562 8 H 0.045 0.955 9 C 0.087 3.913 10 H 0.045 0.955 11 C -0.150 4.150 12 C -0.072 4.072 13 H 0.099 0.901 14 C -0.033 4.033 15 C -0.177 4.177 16 C -0.053 4.053 17 N -0.203 5.203 18 C -0.047 4.047 19 C -0.130 4.130 20 Cl -0.025 7.025 21 C -0.171 4.171 22 C -0.078 4.078 23 N -0.317 5.317 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.172 0.828 28 H 0.207 0.793 29 H 0.198 0.802 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 18.794 -8.438 -2.253 20.724 hybrid contribution -0.786 0.705 0.422 1.137 sum 18.008 -7.733 -1.831 19.683 Atomic orbital electron populations 1.70115 1.08965 1.27966 1.52324 1.25903 0.95033 1.03895 0.92407 0.86406 0.84917 0.76323 0.77496 1.23413 1.07013 1.24440 1.21196 0.91087 0.92493 1.51379 0.95494 1.19207 0.92421 0.89506 0.90166 0.95546 1.21981 0.92909 0.99203 1.00874 1.20369 0.95468 0.90445 1.00948 0.90058 1.20415 0.93038 0.97119 0.92685 1.22254 1.01504 0.94804 0.99156 1.23326 0.91487 0.93878 0.96611 1.67875 1.13441 1.36740 1.02257 1.23051 0.97116 0.88030 0.96538 1.22147 1.03364 0.94693 0.92808 1.98368 1.90972 1.69317 1.43865 1.22217 1.01216 0.97276 0.96408 1.22091 0.88181 0.95000 1.02490 1.61363 1.07522 1.57194 1.05661 0.93086 0.94224 0.92337 0.82803 0.79262 0.80165 0.90510 0.90892 0.92057 0.89359 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.08 16 2 C 0.03 1.50 5.47 84.66 0.46 1.96 16 3 Si 0.92 44.06 26.94 68.60 1.85 45.91 16 4 H -0.31 -14.96 7.11 99.48 0.71 -14.26 16 5 H -0.15 -6.19 5.09 99.48 0.51 -5.68 16 6 H -0.32 -15.62 7.11 99.48 0.71 -14.92 16 7 C -0.52 -28.93 9.29 25.60 0.24 -28.69 16 8 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 9 C 0.20 8.35 1.79 44.19 0.08 8.42 16 10 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 11 C -0.11 -3.94 4.44 30.65 0.14 -3.81 16 12 C -0.05 -1.50 2.36 -11.46 -0.03 -1.53 16 13 H 0.08 2.40 6.32 -2.39 -0.02 2.38 16 14 C -0.02 -0.61 4.81 -19.64 -0.09 -0.70 16 15 C -0.16 -3.44 8.79 22.36 0.20 -3.24 16 16 C 0.10 2.05 11.18 84.67 0.95 3.00 16 17 N -0.49 -11.29 10.36 -195.74 -2.03 -13.32 16 18 C 0.11 2.42 10.99 84.72 0.93 3.35 16 19 C -0.10 -2.44 6.34 22.42 0.14 -2.30 16 20 Cl -0.05 -1.27 27.18 -2.72 -0.07 -1.34 16 21 C -0.13 -3.15 5.22 30.65 0.16 -2.99 16 22 C 0.05 1.44 6.47 86.33 0.56 1.99 16 23 N -0.69 -25.11 3.14 -495.59 -1.56 -26.67 16 24 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 2.06 7.41 -2.38 -0.02 2.05 16 27 H 0.15 2.98 7.24 -2.91 -0.02 2.96 16 28 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.61 7.40 -2.38 -0.02 1.60 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.34 12.06 8.79 -89.69 -0.79 11.27 16 Total: -1.00 -66.82 287.72 2.34 -64.48 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.12 Total: 15.55 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.73 Total: -24.53 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.29 Total: -100.06 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.91 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -66.82 2.34 -64.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.713 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds