Wall clock time and date at job start Mon Mar 30 2020 08:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47022 * 269.99614 * 3 2 1 5 5 H 1.48499 * 109.47087 * 29.99548 * 3 2 1 6 6 H 1.48497 * 109.47083 * 149.99447 * 3 2 1 7 7 C 1.37882 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99790 * 0.02562 * 7 2 1 10 10 H 1.09010 * 109.46369 * 300.02178 * 9 7 2 11 11 C 1.53034 * 109.46133 * 180.02562 * 9 7 2 12 12 C 1.53117 * 109.27808 * 299.16113 * 11 9 7 13 13 H 1.09003 * 109.57409 * 62.28814 * 12 11 9 14 14 C 1.50704 * 109.52010 * 182.43902 * 12 11 9 15 15 C 1.38650 * 120.79441 * 59.68904 * 14 12 11 16 16 C 1.38189 * 119.17792 * 180.02562 * 15 14 12 17 17 N 1.31877 * 120.79394 * 0.02562 * 16 15 14 18 18 C 1.31844 * 121.74011 * 359.97438 * 17 16 15 19 19 C 1.38351 * 120.74466 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 120.43355 * 179.97438 * 19 18 17 21 21 C 1.53116 * 109.16251 * 302.34622 * 12 11 9 22 22 C 1.53042 * 109.27529 * 57.65436 * 21 12 11 23 23 N 1.46842 * 109.46359 * 59.99993 * 9 7 2 24 24 H 0.97006 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.50135 * 179.22219 * 11 9 7 26 26 H 1.09005 * 109.50350 * 59.10648 * 11 9 7 27 27 H 1.08001 * 120.41413 * 359.97438 * 15 14 12 28 28 H 1.08002 * 119.60222 * 180.02562 * 16 15 14 29 29 H 1.07997 * 119.62968 * 179.72058 * 18 17 16 30 30 H 1.09000 * 109.50315 * 177.59410 * 21 12 11 31 31 H 1.08999 * 109.50469 * 297.71129 * 21 12 11 32 32 H 1.08995 * 109.46345 * 60.83733 * 22 21 12 33 33 H 1.09004 * 109.45950 * 180.81428 * 22 21 12 34 34 H 1.00897 * 111.00238 * 182.37189 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6237 -2.5564 0.8902 11 6 2.2457 -3.6622 0.0018 12 6 3.1104 -3.5892 -1.2597 13 1 3.6852 -2.6631 -1.2553 14 6 4.0515 -4.7658 -1.2938 15 6 3.5648 -6.0640 -1.3027 16 6 4.4579 -7.1181 -1.3337 17 7 5.7585 -6.9007 -1.3541 18 6 6.2579 -5.6806 -1.3465 19 6 5.4257 -4.5758 -1.3159 20 17 6.0920 -2.9728 -1.3054 21 6 2.2038 -3.6231 -2.4931 22 6 1.2104 -2.4611 -2.4220 23 7 0.4073 -2.5770 -1.1988 24 1 -0.4850 0.8401 -0.0004 25 1 1.7013 -4.6065 0.0158 26 1 2.8824 -3.5955 0.8840 27 1 2.5010 -6.2493 -1.2849 28 1 4.0863 -8.1322 -1.3413 29 1 7.3289 -5.5420 -1.3593 30 1 2.8108 -3.5284 -3.3936 31 1 1.6589 -4.5668 -2.5185 32 1 1.7556 -1.5174 -2.4107 33 1 0.5539 -2.4909 -3.2917 34 1 -0.1377 -3.4261 -1.2030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259920388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:08 Heat of formation + Delta-G solvation = 21.695633 kcal Electronic energy + Delta-G solvation = -18323.635745 eV Core-core repulsion = 15474.634497 eV Total energy + Delta-G solvation = -2849.001249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38725 -37.97406 -36.48331 -33.72017 -32.10583 -31.00606 -29.89048 -29.45842 -25.29038 -24.18041 -23.35156 -21.77863 -21.01587 -19.12343 -16.88139 -16.59586 -16.01477 -15.82114 -14.64229 -14.53439 -14.26594 -13.97385 -13.46576 -13.40876 -13.07725 -12.40143 -12.27523 -11.93481 -11.85815 -11.39444 -11.18319 -11.05648 -10.89021 -10.66923 -10.47088 -10.21358 -9.90325 -9.60197 -9.48142 -9.14738 -8.89684 -8.83164 -8.34465 -6.80776 -5.86039 -3.97617 0.95530 1.20625 2.17790 3.32820 3.40574 3.43417 3.68883 4.38580 4.48683 4.65929 4.78619 4.98403 5.31057 5.33060 5.46503 5.59127 5.61437 5.73515 5.90661 6.02753 6.13922 6.17113 6.28771 6.45382 6.50325 6.59230 6.78465 6.85955 6.93657 7.14892 7.58274 7.81644 7.90891 8.20986 8.59610 8.89613 9.19800 9.69226 11.18878 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024176 B = 0.006918 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.885885 B = 4046.212724 C = 4804.751396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.084 3.916 3 Si 0.873 3.127 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.219 3.781 10 H 0.042 0.958 11 C -0.130 4.130 12 C -0.052 4.052 13 H 0.104 0.896 14 C -0.009 4.009 15 C -0.158 4.158 16 C 0.096 3.904 17 N -0.483 5.483 18 C 0.109 3.891 19 C -0.093 4.093 20 Cl -0.049 7.049 21 C -0.139 4.139 22 C 0.076 3.924 23 N -0.649 5.649 24 H 0.254 0.746 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 -10.572 -3.887 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.111 3.889 10 H 0.060 0.940 11 C -0.169 4.169 12 C -0.071 4.071 13 H 0.122 0.878 14 C -0.017 4.017 15 C -0.178 4.178 16 C -0.060 4.060 17 N -0.193 5.193 18 C -0.049 4.049 19 C -0.122 4.122 20 Cl -0.020 7.020 21 C -0.179 4.179 22 C -0.054 4.054 23 N -0.275 5.275 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.737 -10.343 -3.872 13.484 hybrid contribution 0.499 0.853 -0.048 0.989 sum 8.235 -9.490 -3.920 13.163 Atomic orbital electron populations 1.70086 1.05590 1.25509 1.47118 1.24915 0.94534 0.98303 0.94501 0.86924 0.80204 0.84706 0.78077 1.20784 1.21327 1.20037 1.20879 0.92145 0.90042 1.53620 0.92803 1.19154 0.88844 0.91292 0.89600 0.94033 1.22360 0.99138 1.00149 0.95301 1.20431 0.94926 0.94664 0.97035 0.87809 1.20754 0.92697 0.96883 0.91414 1.22056 1.01876 0.91974 1.01915 1.22791 0.88487 0.99625 0.95099 1.67769 1.15416 1.22826 1.13244 1.22694 1.00156 0.86305 0.95766 1.22100 0.94274 0.88092 1.07684 1.98386 1.84863 1.21945 1.96786 1.22330 0.98745 1.00700 0.96132 1.21726 0.93492 0.97326 0.92873 1.60760 1.25982 1.39003 1.01727 0.93559 0.94573 0.92807 0.84189 0.82451 0.82280 0.93132 0.93327 0.89927 0.93539 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.98 12.77 55.43 0.71 -23.27 16 2 C 0.08 2.26 5.39 -17.82 -0.10 2.16 16 3 Si 0.87 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -13.68 6.47 -34.44 -0.22 -13.91 16 8 H 0.05 1.41 6.76 -52.49 -0.35 1.05 16 9 C 0.22 5.09 2.95 -68.88 -0.20 4.89 16 10 H 0.04 1.08 8.14 -51.92 -0.42 0.66 16 11 C -0.13 -2.50 4.69 -26.65 -0.13 -2.62 16 12 C -0.05 -0.92 2.11 -91.65 -0.19 -1.12 16 13 H 0.10 2.07 4.92 -51.93 -0.26 1.81 16 14 C -0.01 -0.14 4.81 -104.28 -0.50 -0.64 16 15 C -0.16 -2.10 8.79 -39.45 -0.35 -2.45 16 16 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 17 N -0.48 -6.62 10.36 -13.22 -0.14 -6.76 16 18 C 0.11 1.46 10.99 -17.50 -0.19 1.27 16 19 C -0.09 -1.38 6.34 -39.36 -0.25 -1.63 16 20 Cl -0.05 -0.74 27.18 -51.86 -1.41 -2.15 16 21 C -0.14 -2.35 5.22 -26.65 -0.14 -2.49 16 22 C 0.08 1.53 6.30 -3.86 -0.02 1.50 16 23 N -0.65 -14.32 5.97 -108.03 -0.65 -14.97 16 24 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.04 0.62 7.39 -51.93 -0.38 0.24 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.14 1.67 7.23 -52.49 -0.38 1.29 16 28 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.75 7.41 -51.93 -0.38 0.36 16 32 H 0.08 1.90 6.99 -51.93 -0.36 1.54 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.30 5.90 8.86 -39.29 -0.35 5.56 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -28.26 288.93 -8.78 -37.04 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.14 Total: 3.90 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.49 Total: -14.05 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.07 Total: -45.00 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.15 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.26 -8.78 -37.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.734 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds