Wall clock time and date at job start Mon Mar 30 2020 08:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47022 * 269.99614 * 3 2 1 5 5 H 1.48499 * 109.47087 * 29.99548 * 3 2 1 6 6 H 1.48497 * 109.47083 * 149.99447 * 3 2 1 7 7 C 1.37882 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99790 * 0.02562 * 7 2 1 10 10 H 1.09010 * 109.46369 * 300.02178 * 9 7 2 11 11 C 1.53034 * 109.46133 * 180.02562 * 9 7 2 12 12 C 1.53117 * 109.27808 * 299.16113 * 11 9 7 13 13 H 1.09003 * 109.57409 * 62.28814 * 12 11 9 14 14 C 1.50704 * 109.52010 * 182.43902 * 12 11 9 15 15 C 1.38650 * 120.79441 * 59.68904 * 14 12 11 16 16 C 1.38189 * 119.17792 * 180.02562 * 15 14 12 17 17 N 1.31877 * 120.79394 * 0.02562 * 16 15 14 18 18 C 1.31844 * 121.74011 * 359.97438 * 17 16 15 19 19 C 1.38351 * 120.74466 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 120.43355 * 179.97438 * 19 18 17 21 21 C 1.53116 * 109.16251 * 302.34622 * 12 11 9 22 22 C 1.53042 * 109.27529 * 57.65436 * 21 12 11 23 23 N 1.46842 * 109.46359 * 59.99993 * 9 7 2 24 24 H 0.97006 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.50135 * 179.22219 * 11 9 7 26 26 H 1.09005 * 109.50350 * 59.10648 * 11 9 7 27 27 H 1.08001 * 120.41413 * 359.97438 * 15 14 12 28 28 H 1.08002 * 119.60222 * 180.02562 * 16 15 14 29 29 H 1.07997 * 119.62968 * 179.72058 * 18 17 16 30 30 H 1.09000 * 109.50315 * 177.59410 * 21 12 11 31 31 H 1.08999 * 109.50469 * 297.71129 * 21 12 11 32 32 H 1.08995 * 109.46345 * 60.83733 * 22 21 12 33 33 H 1.09004 * 109.45950 * 180.81428 * 22 21 12 34 34 H 1.00897 * 111.00238 * 182.37189 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6237 -2.5564 0.8902 11 6 2.2457 -3.6622 0.0018 12 6 3.1104 -3.5892 -1.2597 13 1 3.6852 -2.6631 -1.2553 14 6 4.0515 -4.7658 -1.2938 15 6 3.5648 -6.0640 -1.3027 16 6 4.4579 -7.1181 -1.3337 17 7 5.7585 -6.9007 -1.3541 18 6 6.2579 -5.6806 -1.3465 19 6 5.4257 -4.5758 -1.3159 20 17 6.0920 -2.9728 -1.3054 21 6 2.2038 -3.6231 -2.4931 22 6 1.2104 -2.4611 -2.4220 23 7 0.4073 -2.5770 -1.1988 24 1 -0.4850 0.8401 -0.0004 25 1 1.7013 -4.6065 0.0158 26 1 2.8824 -3.5955 0.8840 27 1 2.5010 -6.2493 -1.2849 28 1 4.0863 -8.1322 -1.3413 29 1 7.3289 -5.5420 -1.3593 30 1 2.8108 -3.5284 -3.3936 31 1 1.6589 -4.5668 -2.5185 32 1 1.7556 -1.5174 -2.4107 33 1 0.5539 -2.4909 -3.2917 34 1 -0.1377 -3.4261 -1.2030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259920388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:08 Heat of formation + Delta-G solvation = 4.288684 kcal Electronic energy + Delta-G solvation = -18324.390567 eV Core-core repulsion = 15474.634497 eV Total energy + Delta-G solvation = -2849.756071 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49913 -39.48777 -37.61503 -35.19500 -33.94936 -32.02055 -31.57314 -30.84078 -27.23203 -25.45470 -24.45512 -23.32776 -22.47042 -20.76629 -18.10600 -17.85617 -17.71999 -16.99832 -16.45458 -16.10539 -15.36550 -15.08418 -15.06092 -14.87396 -14.64646 -13.94679 -13.71807 -13.35537 -13.08871 -13.01270 -12.78295 -12.60232 -12.52033 -12.32384 -12.14248 -11.72087 -11.54886 -11.26361 -10.77205 -10.56303 -10.48863 -10.29083 -9.94266 -8.49558 -7.92547 -6.07964 -0.06252 0.11705 1.07074 1.39266 1.42742 1.49557 2.47987 2.66526 3.29764 3.46218 3.49354 3.71864 3.95023 4.01559 4.15880 4.20093 4.33667 4.52937 4.61128 4.65343 4.75957 4.78206 4.95953 4.99714 5.11482 5.24066 5.32423 5.34116 5.52802 5.57022 5.73099 5.85241 6.26644 6.74751 6.81467 7.04644 7.41014 7.61129 9.11050 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024176 B = 0.006918 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.885885 B = 4046.212724 C = 4804.751396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.039 3.961 3 Si 0.925 3.075 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.046 0.954 9 C 0.219 3.781 10 H 0.007 0.993 11 C -0.118 4.118 12 C -0.044 4.044 13 H 0.077 0.923 14 C -0.025 4.025 15 C -0.156 4.156 16 C 0.104 3.896 17 N -0.494 5.494 18 C 0.111 3.889 19 C -0.105 4.105 20 Cl -0.061 7.061 21 C -0.128 4.128 22 C 0.080 3.920 23 N -0.667 5.667 24 H 0.252 0.748 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.158 0.842 28 H 0.195 0.805 29 H 0.180 0.820 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 -12.625 -4.658 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.164 4.164 3 Si 0.752 3.248 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.064 0.936 9 C 0.111 3.889 10 H 0.025 0.975 11 C -0.157 4.157 12 C -0.063 4.063 13 H 0.095 0.905 14 C -0.034 4.034 15 C -0.176 4.176 16 C -0.052 4.052 17 N -0.203 5.203 18 C -0.047 4.047 19 C -0.134 4.134 20 Cl -0.032 7.032 21 C -0.167 4.167 22 C -0.050 4.050 23 N -0.295 5.295 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.176 0.824 28 H 0.212 0.788 29 H 0.197 0.803 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.445 -12.399 -4.648 15.705 hybrid contribution 0.290 1.411 0.196 1.454 sum 8.735 -10.988 -4.452 14.726 Atomic orbital electron populations 1.70195 1.06681 1.25818 1.48930 1.25497 0.95171 1.00973 0.94727 0.86103 0.79131 0.81679 0.77926 1.20643 1.21227 1.19839 1.21149 0.91942 0.91449 1.52126 0.93584 1.18940 0.89121 0.91890 0.88966 0.97499 1.22133 0.98359 0.99397 0.95861 1.20170 0.94896 0.94862 0.96358 0.90494 1.20588 0.92477 0.96922 0.93396 1.22259 1.03052 0.91064 1.01218 1.23370 0.87764 1.01024 0.93003 1.67874 1.16306 1.22646 1.13457 1.22994 1.01034 0.85815 0.94826 1.22214 0.94416 0.88003 1.08755 1.98380 1.84990 1.22923 1.96916 1.22186 0.98057 1.00232 0.96250 1.21617 0.93984 0.96998 0.92411 1.60513 1.26727 1.40346 1.01914 0.93905 0.92148 0.94132 0.82403 0.78838 0.80345 0.92031 0.90829 0.93614 0.92037 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.78 12.77 21.45 0.27 -50.51 16 2 C 0.04 2.16 5.39 84.66 0.46 2.62 16 3 Si 0.92 43.77 29.54 68.60 2.03 45.79 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.53 -27.92 6.47 25.60 0.17 -27.75 16 8 H 0.05 2.46 6.76 -2.91 -0.02 2.44 16 9 C 0.22 10.31 2.95 44.19 0.13 10.44 16 10 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 11 C -0.12 -4.44 4.69 30.64 0.14 -4.29 16 12 C -0.04 -1.51 2.11 -11.46 -0.02 -1.54 16 13 H 0.08 3.07 4.92 -2.39 -0.01 3.05 16 14 C -0.03 -0.73 4.81 -19.65 -0.09 -0.82 16 15 C -0.16 -3.58 8.79 22.36 0.20 -3.39 16 16 C 0.10 2.13 11.18 84.67 0.95 3.08 16 17 N -0.49 -11.90 10.36 -195.75 -2.03 -13.93 16 18 C 0.11 2.71 10.99 84.72 0.93 3.64 16 19 C -0.10 -2.96 6.34 22.42 0.14 -2.81 16 20 Cl -0.06 -1.82 27.18 -2.72 -0.07 -1.89 16 21 C -0.13 -4.05 5.22 30.65 0.16 -3.89 16 22 C 0.08 3.15 6.30 86.34 0.54 3.69 16 23 N -0.67 -29.33 5.97 -495.70 -2.96 -32.29 16 24 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 25 H 0.06 1.96 7.39 -2.39 -0.02 1.94 16 26 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.16 3.02 7.23 -2.91 -0.02 3.00 16 28 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.99 7.41 -2.39 -0.02 1.97 16 32 H 0.05 2.13 6.99 -2.39 -0.02 2.11 16 33 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.31 12.05 8.86 -89.70 -0.79 11.25 16 Total: -1.00 -61.33 288.93 1.26 -60.07 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.33 Total: 13.78 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.70 Total: -21.03 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.72 Total: -96.72 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -61.33 1.26 -60.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.359 kcal (2) G-P(sol) polarization free energy of solvation -61.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds