Wall clock time and date at job start Mon Mar 30 2020 08:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47460 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47071 * 300.00113 * 3 2 1 6 6 H 1.48499 * 109.47210 * 59.99742 * 3 2 1 7 7 C 1.37874 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46652 * 60.01853 * 9 7 2 11 11 C 1.53039 * 109.46447 * 180.02562 * 9 7 2 12 12 C 1.53114 * 109.27742 * 60.83453 * 11 9 7 13 13 H 1.09001 * 109.52654 * 297.69049 * 12 11 9 14 14 C 1.50699 * 109.52094 * 177.55988 * 12 11 9 15 15 C 1.38646 * 120.79646 * 299.99729 * 14 12 11 16 16 C 1.38190 * 119.17585 * 179.74443 * 15 14 12 17 17 N 1.31875 * 120.79891 * 0.25771 * 16 15 14 18 18 C 1.31848 * 121.73608 * 359.97438 * 17 16 15 19 19 C 1.38346 * 120.74611 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 120.43622 * 180.02562 * 19 18 17 21 21 C 1.53118 * 109.16347 * 57.65483 * 12 11 9 22 22 C 1.53037 * 109.27957 * 302.34666 * 21 12 11 23 23 N 1.46847 * 109.52111 * 59.17603 * 22 21 12 24 24 H 0.96997 * 120.00466 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.49837 * 300.89360 * 11 9 7 26 26 H 1.09004 * 109.53401 * 180.79466 * 11 9 7 27 27 H 1.08002 * 120.41371 * 0.02950 * 15 14 12 28 28 H 1.08006 * 119.60214 * 180.23402 * 16 15 14 29 29 H 1.07999 * 119.63097 * 180.02562 * 18 17 16 30 30 H 1.09008 * 109.50220 * 62.28279 * 21 12 11 31 31 H 1.09000 * 109.50967 * 182.40191 * 21 12 11 32 32 H 1.09001 * 109.46046 * 299.16366 * 22 21 12 33 33 H 1.08997 * 109.45399 * 179.18431 * 22 21 12 34 34 H 1.00899 * 110.99980 * 62.35886 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6251 -2.5564 -0.8922 11 6 2.2458 -3.6622 -0.0015 12 6 3.1086 -3.5892 1.2613 13 1 3.6834 -2.6630 1.2568 14 6 4.0497 -4.7657 1.2969 15 6 3.5630 -6.0638 1.3118 16 6 4.4561 -7.1179 1.3391 17 7 5.7568 -6.9006 1.3562 18 6 6.2562 -5.6804 1.3475 19 6 5.4239 -4.5757 1.3194 20 17 6.0902 -2.9726 1.3075 21 6 2.2002 -3.6230 2.4934 22 6 1.2068 -2.4611 2.4209 23 7 0.4051 -2.5768 1.1961 24 1 -0.4851 0.8400 0.0004 25 1 2.8839 -3.5954 -0.8826 26 1 1.7021 -4.6068 -0.0165 27 1 2.4990 -6.2490 1.2974 28 1 4.0845 -8.1320 1.3470 29 1 7.3272 -5.5417 1.3617 30 1 1.6552 -4.5667 2.5179 31 1 2.8058 -3.5283 3.3948 32 1 1.7520 -1.5173 2.4103 33 1 0.5492 -2.4911 3.2896 34 1 -0.1399 -3.4259 1.1995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259920390.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:12 Heat of formation + Delta-G solvation = 21.676109 kcal Electronic energy + Delta-G solvation = -18324.263499 eV Core-core repulsion = 15475.261403 eV Total energy + Delta-G solvation = -2849.002095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38629 -37.97132 -36.48103 -33.71963 -32.10513 -31.00508 -29.89072 -29.45717 -25.29258 -24.17959 -23.35212 -21.77755 -21.01638 -19.12340 -16.88062 -16.59518 -16.01630 -15.82121 -14.64128 -14.53325 -14.26371 -13.97328 -13.46546 -13.40535 -13.08241 -12.40078 -12.27459 -11.93455 -11.85766 -11.39440 -11.18118 -11.05889 -10.90408 -10.64921 -10.47308 -10.20191 -9.90478 -9.60507 -9.48107 -9.14708 -8.89426 -8.83195 -8.34439 -6.80932 -5.86182 -3.97725 0.95597 1.20672 2.18021 3.31884 3.41132 3.44119 3.68937 4.38625 4.48643 4.66017 4.78665 4.98468 5.31096 5.33010 5.46546 5.59130 5.61471 5.73512 5.90648 6.02745 6.13962 6.17139 6.28747 6.45392 6.50367 6.59261 6.78471 6.86016 6.93622 7.14823 7.58182 7.81686 7.91076 8.20815 8.59349 8.89620 9.19836 9.69208 11.18758 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.006919 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.930977 B = 4045.673276 C = 4804.718033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.218 3.782 10 H 0.042 0.958 11 C -0.130 4.130 12 C -0.052 4.052 13 H 0.104 0.896 14 C -0.009 4.009 15 C -0.158 4.158 16 C 0.096 3.904 17 N -0.483 5.483 18 C 0.109 3.891 19 C -0.093 4.093 20 Cl -0.048 7.048 21 C -0.139 4.139 22 C 0.076 3.924 23 N -0.648 5.648 24 H 0.254 0.746 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -10.579 3.906 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.111 3.889 10 H 0.060 0.940 11 C -0.169 4.169 12 C -0.071 4.071 13 H 0.122 0.878 14 C -0.017 4.017 15 C -0.178 4.178 16 C -0.060 4.060 17 N -0.193 5.193 18 C -0.049 4.049 19 C -0.122 4.122 20 Cl -0.020 7.020 21 C -0.179 4.179 22 C -0.054 4.054 23 N -0.274 5.274 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.753 -10.352 3.894 13.507 hybrid contribution 0.485 0.855 0.035 0.983 sum 8.237 -9.497 3.929 13.171 Atomic orbital electron populations 1.70094 1.05590 1.25399 1.47221 1.24916 0.94533 0.98321 0.94510 0.86866 0.80462 0.85052 0.77556 1.19889 1.21141 1.21110 1.20916 0.92187 0.90024 1.53487 0.92739 1.19162 0.88831 0.91313 0.89632 0.94048 1.22359 0.99151 1.00139 0.95292 1.20430 0.94926 0.94676 0.97033 0.87792 1.20755 0.92698 0.96883 0.91411 1.22055 1.01872 0.91977 1.01924 1.22792 0.88488 0.99624 0.95099 1.67772 1.15415 1.22826 1.13244 1.22694 1.00155 0.86306 0.95769 1.22103 0.94276 0.88103 1.07677 1.98387 1.84868 1.21920 1.96783 1.22328 0.98731 1.00695 0.96142 1.21737 0.93503 0.97330 0.92868 1.60793 1.25944 1.38986 1.01712 0.93617 0.92815 0.94578 0.84190 0.82452 0.82281 0.93327 0.93126 0.89926 0.93536 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.98 12.77 55.43 0.71 -23.27 16 2 C 0.08 2.25 5.39 -17.82 -0.10 2.16 16 3 Si 0.87 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -13.66 6.47 -34.44 -0.22 -13.88 16 8 H 0.05 1.42 6.77 -52.49 -0.36 1.07 16 9 C 0.22 5.08 2.95 -68.87 -0.20 4.88 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.13 -2.49 4.70 -26.65 -0.13 -2.62 16 12 C -0.05 -0.92 2.11 -91.65 -0.19 -1.12 16 13 H 0.10 2.07 4.92 -51.93 -0.26 1.82 16 14 C -0.01 -0.14 4.81 -104.28 -0.50 -0.64 16 15 C -0.16 -2.11 8.79 -39.45 -0.35 -2.45 16 16 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 17 N -0.48 -6.63 10.36 -13.22 -0.14 -6.76 16 18 C 0.11 1.46 10.99 -17.50 -0.19 1.27 16 19 C -0.09 -1.38 6.34 -39.35 -0.25 -1.63 16 20 Cl -0.05 -0.74 27.18 -51.86 -1.41 -2.15 16 21 C -0.14 -2.35 5.22 -26.65 -0.14 -2.49 16 22 C 0.08 1.52 6.31 -3.83 -0.02 1.50 16 23 N -0.65 -14.32 5.97 -107.98 -0.65 -14.96 16 24 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.62 7.41 -51.93 -0.38 0.24 16 27 H 0.14 1.67 7.23 -52.49 -0.38 1.29 16 28 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.05 0.75 7.39 -51.92 -0.38 0.36 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.89 6.99 -51.93 -0.36 1.53 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.30 5.90 8.86 -39.29 -0.35 5.56 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -28.30 288.93 -8.78 -37.08 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.14 Total: 3.87 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.49 Total: -14.06 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.07 Total: -45.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.15 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.30 -8.78 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920390.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.755 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds