Wall clock time and date at job start Mon Mar 30 2020 08:03:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86796 * 120.00225 * 2 1
4 4 H 1.48504 * 109.46957 * 269.99851 * 3 2 1
5 5 H 1.48504 * 109.46993 * 29.99735 * 3 2 1
6 6 H 1.48493 * 109.47106 * 149.99926 * 3 2 1
7 7 C 1.37881 * 119.99939 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00074 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99727 * 0.02562 * 7 2 1
10 10 H 1.08995 * 109.57552 * 59.84223 * 9 7 2
11 11 C 1.53129 * 109.49129 * 299.66034 * 9 7 2
12 12 C 1.53036 * 109.30712 * 297.71220 * 11 9 7
13 13 N 1.46849 * 109.52274 * 300.83936 * 12 11 9
14 14 C 1.46842 * 111.20050 * 61.74759 * 13 12 11
15 15 H 1.09009 * 109.46400 * 58.26507 * 14 13 12
16 16 C 1.50693 * 109.46675 * 178.24078 * 14 13 12
17 17 C 1.38240 * 119.60226 * 245.04937 * 16 14 13
18 18 C 1.38610 * 119.17625 * 179.97438 * 17 16 14
19 19 C 1.38783 * 118.40826 * 0.02562 * 18 17 16
20 20 Cl 1.73601 * 120.43055 * 180.02562 * 19 18 17
21 21 C 1.38307 * 119.13810 * 359.97438 * 19 18 17
22 22 N 1.31849 * 119.60450 * 64.78100 * 16 14 13
23 23 C 1.53039 * 109.52266 * 298.25785 * 14 13 12
24 24 H 0.97002 * 119.99558 * 0.02562 * 1 2 3
25 25 H 1.09000 * 109.46579 * 177.77579 * 11 9 7
26 26 H 1.08997 * 109.53656 * 57.69180 * 11 9 7
27 27 H 1.09001 * 109.45883 * 180.82826 * 12 11 9
28 28 H 1.08995 * 109.46584 * 60.85899 * 12 11 9
29 29 H 1.00903 * 110.99692 * 185.84337 * 13 12 11
30 30 H 1.08001 * 120.41207 * 0.02562 * 17 16 14
31 31 H 1.07992 * 120.79612 * 179.97438 * 18 17 16
32 32 H 1.07993 * 119.63015 * 179.97438 * 21 19 18
33 33 H 1.09002 * 109.50563 * 179.11883 * 23 14 13
34 34 H 1.09003 * 109.50107 * 299.19864 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 1 0.6219 -2.5576 -0.8876
11 6 0.3764 -2.5842 1.2546
12 6 1.2699 -2.5639 2.4969
13 7 2.2013 -3.6983 2.4501
14 6 3.0842 -3.6125 1.2799
15 1 3.6398 -2.6752 1.3120
16 6 4.0499 -4.7692 1.2936
17 6 5.4025 -4.5278 1.4463
18 6 6.2828 -5.5983 1.4582
19 6 5.7673 -6.8788 1.3146
20 17 6.8222 -8.2575 1.3226
21 6 4.4019 -7.0423 1.1661
22 7 3.5942 -5.9997 1.1650
23 6 2.2450 -3.6640 0.0012
24 1 -0.4849 0.8401 -0.0004
25 1 -0.1982 -3.5102 1.2347
26 1 -0.3047 -1.7337 1.2823
27 1 0.6506 -2.6391 3.3908
28 1 1.8340 -1.6317 2.5235
29 1 2.7365 -3.7620 3.3031
30 1 5.7686 -3.5176 1.5559
31 1 7.3446 -5.4397 1.5755
32 1 3.9922 -8.0351 1.0534
33 1 2.8992 -3.5845 -0.8670
34 1 1.7002 -4.6072 -0.0388
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259961768.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 08:03:57
Heat of formation + Delta-G solvation = 20.832366 kcal
Electronic energy + Delta-G solvation = -17942.579307 eV
Core-core repulsion = 15093.540624 eV
Total energy + Delta-G solvation = -2849.038683 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.088 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.32439 -37.71901 -36.65208 -33.26061 -32.42750 -31.69727 -30.52578 -28.64818
-25.20924 -24.04911 -23.43476 -21.97389 -20.97462 -18.57181 -17.14748 -16.56080
-16.10594 -15.74019 -14.83762 -14.56862 -14.34962 -13.66878 -13.60100 -13.21555
-12.79466 -12.61377 -12.32266 -12.10722 -11.82312 -11.52243 -11.28940 -11.00731
-10.95035 -10.58543 -10.29474 -9.87608 -9.83832 -9.45275 -9.32053 -9.02759
-8.83255 -8.71555 -8.31469 -7.58779 -5.99789 -4.05569 0.94024 1.19119
1.93837 3.26534 3.34254 3.35264 3.71460 4.40631 4.41566 4.61692
4.68944 4.90474 5.15635 5.30124 5.33881 5.61570 5.80949 5.90628
6.03811 6.17759 6.29952 6.48179 6.51981 6.68391 6.75284 6.98123
7.07561 7.25989 7.52107 7.63032 7.71714 7.91596 8.04131 8.16417
8.19862 8.45366 8.97293 9.58163 11.05765
Molecular weight = 266.09amu
Principal moments of inertia in cm(-1)
A = 0.034595 B = 0.004638 C = 0.004348
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 809.164072 B = 6036.051859 C = 6438.625399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.063 3.937
3 Si 0.884 3.116
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.509 4.509
8 H 0.052 0.948
9 C 0.043 3.957
10 H 0.028 0.972
11 C -0.105 4.105
12 C 0.074 3.926
13 N -0.675 5.675
14 C 0.146 3.854
15 H 0.062 0.938
16 C 0.152 3.848
17 C -0.159 4.159
18 C -0.068 4.068
19 C -0.102 4.102
20 Cl -0.069 7.069
21 C 0.113 3.887
22 N -0.438 5.438
23 C -0.091 4.091
24 H 0.259 0.741
25 H 0.025 0.975
26 H 0.093 0.907
27 H 0.049 0.951
28 H 0.039 0.961
29 H 0.321 0.679
30 H 0.143 0.857
31 H 0.141 0.859
32 H 0.161 0.839
33 H 0.044 0.956
34 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.800 -10.792 4.341 15.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.138 4.138
3 Si 0.712 3.288
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.548 4.548
8 H 0.070 0.930
9 C 0.025 3.975
10 H 0.046 0.954
11 C -0.144 4.144
12 C -0.054 4.054
13 N -0.305 5.305
14 C 0.036 3.964
15 H 0.080 0.920
16 C 0.014 3.986
17 C -0.180 4.180
18 C -0.095 4.095
19 C -0.131 4.131
20 Cl -0.040 7.040
21 C -0.046 4.046
22 N -0.146 5.146
23 C -0.129 4.129
24 H 0.070 0.930
25 H 0.044 0.956
26 H 0.111 0.889
27 H 0.067 0.933
28 H 0.057 0.943
29 H 0.137 0.863
30 H 0.160 0.840
31 H 0.159 0.841
32 H 0.178 0.822
33 H 0.063 0.937
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 9.362 -11.307 3.932 15.197
hybrid contribution 2.250 1.663 0.385 2.824
sum 11.613 -9.644 4.316 15.700
Atomic orbital electron populations
1.69872 1.05800 1.26275 1.50690 1.24935 0.94762 0.98767 0.95314
0.86728 0.79846 0.84082 0.78117 1.20740 1.21274 1.20153 1.21165
0.92553 0.90693 1.50349 0.93013 1.18734 0.92780 0.91521 0.94483
0.95395 1.21555 0.98193 1.00142 0.94466 1.21849 0.94285 0.90591
0.98686 1.60369 1.20634 1.46330 1.03214 1.20414 0.91275 0.90688
0.93997 0.92028 1.21854 0.92330 0.93107 0.91279 1.22133 0.93848
1.00151 1.01867 1.21456 1.00893 0.90514 0.96616 1.22106 0.92890
0.89296 1.08774 1.98359 1.66013 1.42539 1.97104 1.22900 0.87577
0.99045 0.95067 1.67786 1.37721 0.98588 1.10505 1.21575 0.97994
1.00244 0.93084 0.93046 0.95633 0.88918 0.93293 0.94259 0.86295
0.83969 0.84140 0.82216 0.93678 0.92581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.59 11.33 55.43 0.63 -23.96 16
2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16
3 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16
4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
7 C -0.51 -13.22 6.74 -34.44 -0.23 -13.45 16
8 H 0.05 1.33 6.87 -52.49 -0.36 0.97 16
9 C 0.04 1.06 2.61 -91.64 -0.24 0.82 16
10 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16
11 C -0.11 -2.47 5.41 -26.65 -0.14 -2.61 16
12 C 0.07 1.53 6.34 -3.83 -0.02 1.50 16
13 N -0.68 -12.60 6.49 -107.99 -0.70 -13.30 16
14 C 0.15 2.74 2.53 -68.88 -0.17 2.57 16
15 H 0.06 1.21 6.51 -51.92 -0.34 0.87 16
16 C 0.15 2.48 5.67 -82.59 -0.47 2.01 16
17 C -0.16 -2.13 9.71 -39.44 -0.38 -2.52 16
18 C -0.07 -0.80 9.98 -39.24 -0.39 -1.19 16
19 C -0.10 -1.22 6.34 -39.35 -0.25 -1.47 16
20 Cl -0.07 -0.71 28.99 -51.86 -1.50 -2.22 16
21 C 0.11 1.51 10.99 -17.50 -0.19 1.32 16
22 N -0.44 -7.17 9.87 -9.44 -0.09 -7.27 16
23 C -0.09 -1.93 4.70 -26.65 -0.13 -2.06 16
24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16
25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
26 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16
27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
28 H 0.04 0.87 7.31 -51.93 -0.38 0.49 16
29 H 0.32 5.29 8.78 -39.29 -0.35 4.94 16
30 H 0.14 1.67 7.95 -52.49 -0.42 1.25 16
31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16
32 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16
33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16
34 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16
LS Contribution 292.26 15.07 4.40 4.40
Total: -1.00 -27.71 292.26 -9.24 -36.96
By element:
Atomic # 1 Polarization: 7.54 SS G_CDS: -4.24 Total: 3.31 kcal
Atomic # 6 Polarization: -10.76 SS G_CDS: -2.72 Total: -13.48 kcal
Atomic # 7 Polarization: -44.36 SS G_CDS: -0.17 Total: -44.53 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal
Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -27.71 -9.24 -36.96 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259961768.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.788 kcal
(2) G-P(sol) polarization free energy of solvation -27.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.832 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds