Wall clock time and date at job start Mon Mar 30 2020 08:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48504 * 109.46957 * 269.99851 * 3 2 1 5 5 H 1.48504 * 109.46993 * 29.99735 * 3 2 1 6 6 H 1.48493 * 109.47106 * 149.99926 * 3 2 1 7 7 C 1.37881 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99727 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.57552 * 59.84223 * 9 7 2 11 11 C 1.53129 * 109.49129 * 299.66034 * 9 7 2 12 12 C 1.53036 * 109.30712 * 297.71220 * 11 9 7 13 13 N 1.46849 * 109.52274 * 300.83936 * 12 11 9 14 14 C 1.46842 * 111.20050 * 61.74759 * 13 12 11 15 15 H 1.09009 * 109.46400 * 58.26507 * 14 13 12 16 16 C 1.50693 * 109.46675 * 178.24078 * 14 13 12 17 17 C 1.38240 * 119.60226 * 245.04937 * 16 14 13 18 18 C 1.38610 * 119.17625 * 179.97438 * 17 16 14 19 19 C 1.38783 * 118.40826 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 120.43055 * 180.02562 * 19 18 17 21 21 C 1.38307 * 119.13810 * 359.97438 * 19 18 17 22 22 N 1.31849 * 119.60450 * 64.78100 * 16 14 13 23 23 C 1.53039 * 109.52266 * 298.25785 * 14 13 12 24 24 H 0.97002 * 119.99558 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46579 * 177.77579 * 11 9 7 26 26 H 1.08997 * 109.53656 * 57.69180 * 11 9 7 27 27 H 1.09001 * 109.45883 * 180.82826 * 12 11 9 28 28 H 1.08995 * 109.46584 * 60.85899 * 12 11 9 29 29 H 1.00903 * 110.99692 * 185.84337 * 13 12 11 30 30 H 1.08001 * 120.41207 * 0.02562 * 17 16 14 31 31 H 1.07992 * 120.79612 * 179.97438 * 18 17 16 32 32 H 1.07993 * 119.63015 * 179.97438 * 21 19 18 33 33 H 1.09002 * 109.50563 * 179.11883 * 23 14 13 34 34 H 1.09003 * 109.50107 * 299.19864 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6219 -2.5576 -0.8876 11 6 0.3764 -2.5842 1.2546 12 6 1.2699 -2.5639 2.4969 13 7 2.2013 -3.6983 2.4501 14 6 3.0842 -3.6125 1.2799 15 1 3.6398 -2.6752 1.3120 16 6 4.0499 -4.7692 1.2936 17 6 5.4025 -4.5278 1.4463 18 6 6.2828 -5.5983 1.4582 19 6 5.7673 -6.8788 1.3146 20 17 6.8222 -8.2575 1.3226 21 6 4.4019 -7.0423 1.1661 22 7 3.5942 -5.9997 1.1650 23 6 2.2450 -3.6640 0.0012 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1982 -3.5102 1.2347 26 1 -0.3047 -1.7337 1.2823 27 1 0.6506 -2.6391 3.3908 28 1 1.8340 -1.6317 2.5235 29 1 2.7365 -3.7620 3.3031 30 1 5.7686 -3.5176 1.5559 31 1 7.3446 -5.4397 1.5755 32 1 3.9922 -8.0351 1.0534 33 1 2.8992 -3.5845 -0.8670 34 1 1.7002 -4.6072 -0.0388 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259961768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:57 Heat of formation + Delta-G solvation = 20.832366 kcal Electronic energy + Delta-G solvation = -17942.579307 eV Core-core repulsion = 15093.540624 eV Total energy + Delta-G solvation = -2849.038683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.32439 -37.71901 -36.65208 -33.26061 -32.42750 -31.69727 -30.52578 -28.64818 -25.20924 -24.04911 -23.43476 -21.97389 -20.97462 -18.57181 -17.14748 -16.56080 -16.10594 -15.74019 -14.83762 -14.56862 -14.34962 -13.66878 -13.60100 -13.21555 -12.79466 -12.61377 -12.32266 -12.10722 -11.82312 -11.52243 -11.28940 -11.00731 -10.95035 -10.58543 -10.29474 -9.87608 -9.83832 -9.45275 -9.32053 -9.02759 -8.83255 -8.71555 -8.31469 -7.58779 -5.99789 -4.05569 0.94024 1.19119 1.93837 3.26534 3.34254 3.35264 3.71460 4.40631 4.41566 4.61692 4.68944 4.90474 5.15635 5.30124 5.33881 5.61570 5.80949 5.90628 6.03811 6.17759 6.29952 6.48179 6.51981 6.68391 6.75284 6.98123 7.07561 7.25989 7.52107 7.63032 7.71714 7.91596 8.04131 8.16417 8.19862 8.45366 8.97293 9.58163 11.05765 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.004638 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.164072 B = 6036.051859 C = 6438.625399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.043 3.957 10 H 0.028 0.972 11 C -0.105 4.105 12 C 0.074 3.926 13 N -0.675 5.675 14 C 0.146 3.854 15 H 0.062 0.938 16 C 0.152 3.848 17 C -0.159 4.159 18 C -0.068 4.068 19 C -0.102 4.102 20 Cl -0.069 7.069 21 C 0.113 3.887 22 N -0.438 5.438 23 C -0.091 4.091 24 H 0.259 0.741 25 H 0.025 0.975 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.321 0.679 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.044 0.956 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -10.792 4.341 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.025 3.975 10 H 0.046 0.954 11 C -0.144 4.144 12 C -0.054 4.054 13 N -0.305 5.305 14 C 0.036 3.964 15 H 0.080 0.920 16 C 0.014 3.986 17 C -0.180 4.180 18 C -0.095 4.095 19 C -0.131 4.131 20 Cl -0.040 7.040 21 C -0.046 4.046 22 N -0.146 5.146 23 C -0.129 4.129 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.063 0.937 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.362 -11.307 3.932 15.197 hybrid contribution 2.250 1.663 0.385 2.824 sum 11.613 -9.644 4.316 15.700 Atomic orbital electron populations 1.69872 1.05800 1.26275 1.50690 1.24935 0.94762 0.98767 0.95314 0.86728 0.79846 0.84082 0.78117 1.20740 1.21274 1.20153 1.21165 0.92553 0.90693 1.50349 0.93013 1.18734 0.92780 0.91521 0.94483 0.95395 1.21555 0.98193 1.00142 0.94466 1.21849 0.94285 0.90591 0.98686 1.60369 1.20634 1.46330 1.03214 1.20414 0.91275 0.90688 0.93997 0.92028 1.21854 0.92330 0.93107 0.91279 1.22133 0.93848 1.00151 1.01867 1.21456 1.00893 0.90514 0.96616 1.22106 0.92890 0.89296 1.08774 1.98359 1.66013 1.42539 1.97104 1.22900 0.87577 0.99045 0.95067 1.67786 1.37721 0.98588 1.10505 1.21575 0.97994 1.00244 0.93084 0.93046 0.95633 0.88918 0.93293 0.94259 0.86295 0.83969 0.84140 0.82216 0.93678 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.59 11.33 55.43 0.63 -23.96 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.22 6.74 -34.44 -0.23 -13.45 16 8 H 0.05 1.33 6.87 -52.49 -0.36 0.97 16 9 C 0.04 1.06 2.61 -91.64 -0.24 0.82 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.47 5.41 -26.65 -0.14 -2.61 16 12 C 0.07 1.53 6.34 -3.83 -0.02 1.50 16 13 N -0.68 -12.60 6.49 -107.99 -0.70 -13.30 16 14 C 0.15 2.74 2.53 -68.88 -0.17 2.57 16 15 H 0.06 1.21 6.51 -51.92 -0.34 0.87 16 16 C 0.15 2.48 5.67 -82.59 -0.47 2.01 16 17 C -0.16 -2.13 9.71 -39.44 -0.38 -2.52 16 18 C -0.07 -0.80 9.98 -39.24 -0.39 -1.19 16 19 C -0.10 -1.22 6.34 -39.35 -0.25 -1.47 16 20 Cl -0.07 -0.71 28.99 -51.86 -1.50 -2.22 16 21 C 0.11 1.51 10.99 -17.50 -0.19 1.32 16 22 N -0.44 -7.17 9.87 -9.44 -0.09 -7.27 16 23 C -0.09 -1.93 4.70 -26.65 -0.13 -2.06 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.87 7.31 -51.93 -0.38 0.49 16 29 H 0.32 5.29 8.78 -39.29 -0.35 4.94 16 30 H 0.14 1.67 7.95 -52.49 -0.42 1.25 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -27.71 292.26 -9.24 -36.96 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.24 Total: 3.31 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.72 Total: -13.48 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.17 Total: -44.53 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.71 -9.24 -36.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.788 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds