Wall clock time and date at job start Mon Mar 30 2020 08:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48504 * 109.46957 * 269.99851 * 3 2 1 5 5 H 1.48504 * 109.46993 * 29.99735 * 3 2 1 6 6 H 1.48493 * 109.47106 * 149.99926 * 3 2 1 7 7 C 1.37881 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99727 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.57552 * 59.84223 * 9 7 2 11 11 C 1.53129 * 109.49129 * 299.66034 * 9 7 2 12 12 C 1.53036 * 109.30712 * 297.71220 * 11 9 7 13 13 N 1.46849 * 109.52274 * 300.83936 * 12 11 9 14 14 C 1.46842 * 111.20050 * 61.74759 * 13 12 11 15 15 H 1.09009 * 109.46400 * 58.26507 * 14 13 12 16 16 C 1.50693 * 109.46675 * 178.24078 * 14 13 12 17 17 C 1.38240 * 119.60226 * 245.04937 * 16 14 13 18 18 C 1.38610 * 119.17625 * 179.97438 * 17 16 14 19 19 C 1.38783 * 118.40826 * 0.02562 * 18 17 16 20 20 Cl 1.73601 * 120.43055 * 180.02562 * 19 18 17 21 21 C 1.38307 * 119.13810 * 359.97438 * 19 18 17 22 22 N 1.31849 * 119.60450 * 64.78100 * 16 14 13 23 23 C 1.53039 * 109.52266 * 298.25785 * 14 13 12 24 24 H 0.97002 * 119.99558 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46579 * 177.77579 * 11 9 7 26 26 H 1.08997 * 109.53656 * 57.69180 * 11 9 7 27 27 H 1.09001 * 109.45883 * 180.82826 * 12 11 9 28 28 H 1.08995 * 109.46584 * 60.85899 * 12 11 9 29 29 H 1.00903 * 110.99692 * 185.84337 * 13 12 11 30 30 H 1.08001 * 120.41207 * 0.02562 * 17 16 14 31 31 H 1.07992 * 120.79612 * 179.97438 * 18 17 16 32 32 H 1.07993 * 119.63015 * 179.97438 * 21 19 18 33 33 H 1.09002 * 109.50563 * 179.11883 * 23 14 13 34 34 H 1.09003 * 109.50107 * 299.19864 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6219 -2.5576 -0.8876 11 6 0.3764 -2.5842 1.2546 12 6 1.2699 -2.5639 2.4969 13 7 2.2013 -3.6983 2.4501 14 6 3.0842 -3.6125 1.2799 15 1 3.6398 -2.6752 1.3120 16 6 4.0499 -4.7692 1.2936 17 6 5.4025 -4.5278 1.4463 18 6 6.2828 -5.5983 1.4582 19 6 5.7673 -6.8788 1.3146 20 17 6.8222 -8.2575 1.3226 21 6 4.4019 -7.0423 1.1661 22 7 3.5942 -5.9997 1.1650 23 6 2.2450 -3.6640 0.0012 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1982 -3.5102 1.2347 26 1 -0.3047 -1.7337 1.2823 27 1 0.6506 -2.6391 3.3908 28 1 1.8340 -1.6317 2.5235 29 1 2.7365 -3.7620 3.3031 30 1 5.7686 -3.5176 1.5559 31 1 7.3446 -5.4397 1.5755 32 1 3.9922 -8.0351 1.0534 33 1 2.8992 -3.5845 -0.8670 34 1 1.7002 -4.6072 -0.0388 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:56 Heat of formation + Delta-G solvation = 3.917319 kcal Electronic energy + Delta-G solvation = -17943.312799 eV Core-core repulsion = 15093.540624 eV Total energy + Delta-G solvation = -2849.772174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44856 -39.30989 -37.59383 -35.08110 -33.46805 -33.08318 -32.38663 -30.08344 -27.19382 -25.29745 -24.56941 -23.73239 -22.37415 -20.40953 -18.23955 -17.80695 -17.67984 -17.29124 -16.48992 -16.08975 -15.59312 -15.07468 -14.99228 -14.57404 -14.32568 -14.04654 -13.97909 -13.57664 -13.14854 -12.91067 -12.82209 -12.73788 -12.40613 -12.17950 -12.11903 -11.72898 -11.18225 -10.97036 -10.84399 -10.79051 -10.40834 -10.30608 -9.80578 -9.17521 -8.03919 -6.16071 -0.11145 0.21230 1.01221 1.42031 1.44022 1.52081 2.45376 2.63003 3.22295 3.28170 3.40455 3.75754 3.81960 3.99625 4.19559 4.38879 4.49182 4.59860 4.67508 4.69954 4.84360 4.91238 4.95749 5.06956 5.19460 5.30799 5.42286 5.51701 5.60263 5.65517 5.82606 6.01925 6.32062 6.42633 6.68213 6.93543 6.99061 7.50582 9.01176 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.004638 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.164072 B = 6036.051859 C = 6438.625399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.039 3.961 10 H -0.012 1.012 11 C -0.100 4.100 12 C 0.085 3.915 13 N -0.672 5.672 14 C 0.155 3.845 15 H 0.053 0.947 16 C 0.129 3.871 17 C -0.156 4.156 18 C -0.059 4.059 19 C -0.095 4.095 20 Cl -0.049 7.049 21 C 0.105 3.895 22 N -0.469 5.469 23 C -0.080 4.080 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.339 0.661 30 H 0.159 0.841 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.041 0.959 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 -11.463 5.312 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.020 3.980 10 H 0.006 0.994 11 C -0.138 4.138 12 C -0.044 4.044 13 N -0.304 5.304 14 C 0.045 3.955 15 H 0.071 0.929 16 C -0.008 4.008 17 C -0.176 4.176 18 C -0.086 4.086 19 C -0.124 4.124 20 Cl -0.020 7.020 21 C -0.054 4.054 22 N -0.178 5.178 23 C -0.119 4.119 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.157 0.843 30 H 0.176 0.824 31 H 0.190 0.810 32 H 0.195 0.805 33 H 0.060 0.940 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.016 -11.993 4.913 17.674 hybrid contribution 1.461 1.735 0.045 2.269 sum 13.478 -10.257 4.958 17.648 Atomic orbital electron populations 1.70021 1.07196 1.26888 1.51596 1.25653 0.95467 1.01961 0.95129 0.85746 0.78973 0.80080 0.78011 1.20662 1.21249 1.18953 1.21368 0.92682 0.91302 1.49831 0.92745 1.18717 0.93183 0.92785 0.93319 0.99424 1.21400 0.98136 0.98690 0.95598 1.21632 0.94287 0.90640 0.97797 1.60276 1.20976 1.44946 1.04221 1.20158 0.91056 0.91948 0.92366 0.92884 1.21439 0.92869 0.92333 0.94167 1.22242 0.92726 1.01590 1.01066 1.21782 1.02178 0.89638 0.94966 1.22175 0.92782 0.90256 1.07221 1.98374 1.65177 1.41541 1.96903 1.23166 0.88232 0.98990 0.94992 1.67645 1.39332 0.99215 1.11600 1.21377 0.97449 0.98165 0.94881 0.93196 0.95864 0.91675 0.91359 0.95900 0.84332 0.82375 0.80970 0.80505 0.94030 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.20 11.33 21.45 0.24 -51.96 16 2 C 0.02 0.88 5.30 84.65 0.45 1.33 16 3 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.51 -27.09 6.74 25.60 0.17 -26.92 16 8 H 0.05 2.79 6.87 -2.91 -0.02 2.77 16 9 C 0.04 1.96 2.61 -11.45 -0.03 1.93 16 10 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 11 C -0.10 -4.82 5.41 30.65 0.17 -4.66 16 12 C 0.09 3.50 6.34 86.32 0.55 4.05 16 13 N -0.67 -24.56 6.49 -495.57 -3.22 -27.78 16 14 C 0.15 5.73 2.53 44.19 0.11 5.84 16 15 H 0.05 2.05 6.51 -2.38 -0.02 2.04 16 16 C 0.13 4.03 5.67 42.55 0.24 4.28 16 17 C -0.16 -3.76 9.71 22.36 0.22 -3.55 16 18 C -0.06 -1.17 9.98 22.49 0.22 -0.95 16 19 C -0.10 -2.01 6.34 22.42 0.14 -1.87 16 20 Cl -0.05 -0.85 28.99 -2.72 -0.08 -0.93 16 21 C 0.10 2.60 10.99 84.70 0.93 3.53 16 22 N -0.47 -14.82 9.87 -183.79 -1.81 -16.63 16 23 C -0.08 -3.49 4.70 30.65 0.14 -3.35 16 24 H 0.26 14.11 8.31 -92.71 -0.77 13.33 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 3.51 6.05 -2.39 -0.01 3.50 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.02 1.01 7.31 -2.39 -0.02 0.99 16 29 H 0.34 10.59 8.78 -89.69 -0.79 9.80 16 30 H 0.16 3.24 7.95 -2.91 -0.02 3.22 16 31 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -60.34 292.26 0.80 -59.54 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.33 Total: 13.79 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.32 Total: -20.34 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.79 Total: -96.37 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -60.34 0.80 -59.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.457 kcal (2) G-P(sol) polarization free energy of solvation -60.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds