Wall clock time and date at job start Mon Mar 30 2020 08:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00281 * 2 1 4 4 H 1.48497 * 109.47160 * 274.99296 * 3 2 1 5 5 H 1.48507 * 109.46820 * 34.99015 * 3 2 1 6 6 H 1.48497 * 109.47208 * 154.98942 * 3 2 1 7 7 C 1.37877 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99400 * 189.53130 * 7 2 1 9 9 C 1.50700 * 120.00426 * 9.52105 * 7 2 1 10 10 H 1.09002 * 109.52451 * 305.56897 * 9 7 2 11 11 C 1.53125 * 109.56894 * 65.72133 * 9 7 2 12 12 C 1.53033 * 109.27846 * 62.28569 * 11 9 7 13 13 N 1.46847 * 109.52435 * 59.17461 * 12 11 9 14 14 C 1.46845 * 111.19802 * 298.25526 * 13 12 11 15 15 H 1.08992 * 109.46634 * 301.72564 * 14 13 12 16 16 C 1.50700 * 109.46290 * 181.74507 * 14 13 12 17 17 C 1.38231 * 119.60271 * 5.00752 * 16 14 13 18 18 C 1.38609 * 119.17647 * 179.97438 * 17 16 14 19 19 C 1.38778 * 118.41105 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.43104 * 180.02562 * 19 18 17 21 21 C 1.38310 * 119.13436 * 359.97438 * 19 18 17 22 22 N 1.31847 * 119.60644 * 184.73213 * 16 14 13 23 23 C 1.53040 * 109.52013 * 61.74594 * 14 13 12 24 24 H 0.97007 * 120.00008 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.49921 * 182.22433 * 11 9 7 26 26 H 1.08997 * 109.50604 * 302.33836 * 11 9 7 27 27 H 1.09008 * 109.46280 * 299.16049 * 12 11 9 28 28 H 1.09001 * 109.46325 * 179.19675 * 12 11 9 29 29 H 1.00900 * 110.99947 * 174.16277 * 13 12 11 30 30 H 1.08005 * 120.41641 * 0.02562 * 17 16 14 31 31 H 1.08002 * 120.79394 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.62202 * 180.02562 * 21 19 18 33 33 H 1.08998 * 109.50738 * 60.75896 * 23 14 13 34 34 H 1.09001 * 109.50611 * 180.87810 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0044 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1544 9 6 1.2665 -2.4901 -0.2170 10 1 0.4545 -2.5720 0.5055 11 6 0.6936 -2.5232 -1.6366 12 6 1.8422 -2.4693 -2.6464 13 7 2.7369 -3.6140 -2.4336 14 6 3.3360 -3.5777 -1.0934 15 1 3.8869 -2.6459 -0.9669 16 6 4.2775 -4.7434 -0.9325 17 6 4.5292 -5.5717 -2.0102 18 6 5.3970 -6.6409 -1.8525 19 6 5.9821 -6.8386 -0.6097 20 17 7.0775 -8.1610 -0.3540 21 6 5.6820 -5.9678 0.4221 22 7 4.8554 -4.9578 0.2330 23 6 2.2319 -3.6648 -0.0372 24 1 -0.4850 0.8401 -0.0004 25 1 0.1268 -3.4433 -1.7789 26 1 0.0382 -1.6649 -1.7847 27 1 2.4002 -1.5424 -2.5127 28 1 1.4384 -2.5070 -3.6582 29 1 3.4492 -3.6538 -3.1471 30 1 4.0562 -5.3875 -2.9635 31 1 5.6120 -7.3048 -2.6768 32 1 6.1333 -6.1141 1.3924 33 1 1.6894 -4.6029 -0.1543 34 1 2.6756 -3.6222 0.9575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259961770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:59 Heat of formation + Delta-G solvation = 23.394621 kcal Electronic energy + Delta-G solvation = -17937.693932 eV Core-core repulsion = 15088.766357 eV Total energy + Delta-G solvation = -2848.927575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36259 -37.81314 -36.64338 -33.33691 -32.53940 -31.61881 -30.57813 -28.67549 -25.24958 -23.83778 -23.75691 -21.82287 -21.02338 -18.67566 -17.35226 -16.46834 -15.91814 -15.77230 -15.22733 -14.67273 -14.23490 -13.72170 -13.52714 -13.14230 -12.82657 -12.68353 -12.25481 -12.10794 -11.88717 -11.56295 -11.28795 -11.10261 -10.92735 -10.57219 -10.39835 -10.00299 -9.83248 -9.56738 -9.22789 -9.06506 -8.84168 -8.69080 -8.34947 -7.73748 -6.01987 -4.02324 0.97798 1.20774 1.95806 3.28135 3.36772 3.39754 3.73142 4.21986 4.43728 4.67207 4.73910 4.88000 5.15224 5.31008 5.34847 5.68345 5.86100 5.95302 5.98859 6.10036 6.25352 6.35188 6.53673 6.62400 6.69547 6.89387 7.00111 7.13549 7.41085 7.50037 7.71559 7.85498 7.97491 8.03592 8.07211 8.45484 9.00885 9.60387 11.07193 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.004616 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.726999 B = 6064.196020 C = 6401.412866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.041 3.959 10 H 0.036 0.964 11 C -0.101 4.101 12 C 0.072 3.928 13 N -0.686 5.686 14 C 0.142 3.858 15 H 0.072 0.928 16 C 0.154 3.846 17 C -0.152 4.152 18 C -0.068 4.068 19 C -0.106 4.106 20 Cl -0.069 7.069 21 C 0.117 3.883 22 N -0.461 5.461 23 C -0.085 4.085 24 H 0.259 0.741 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.324 0.676 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.040 0.960 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -12.126 -4.762 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.023 3.977 10 H 0.054 0.946 11 C -0.139 4.139 12 C -0.056 4.056 13 N -0.318 5.318 14 C 0.032 3.968 15 H 0.089 0.911 16 C 0.016 3.984 17 C -0.172 4.172 18 C -0.095 4.095 19 C -0.135 4.135 20 Cl -0.041 7.041 21 C -0.042 4.042 22 N -0.170 5.170 23 C -0.123 4.123 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.178 0.822 33 H 0.058 0.942 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.310 -11.951 -3.852 15.632 hybrid contribution 1.453 0.918 -0.841 1.914 sum 10.763 -11.034 -4.693 16.113 Atomic orbital electron populations 1.69965 1.05865 1.26382 1.50338 1.24921 0.94667 0.98793 0.95199 0.86769 0.80236 0.84287 0.77914 1.20844 1.21296 1.19934 1.21148 0.93896 0.90888 1.48883 0.92761 1.18758 0.94096 0.91768 0.93101 0.94600 1.21504 0.95977 0.99613 0.96795 1.21858 0.94938 0.90661 0.98147 1.60527 1.22506 1.46332 1.02461 1.20290 0.93221 0.92263 0.91013 0.91051 1.21782 0.92891 0.95692 0.88042 1.22074 0.98356 0.94997 1.01767 1.21515 0.94765 0.97401 0.95805 1.22058 0.99674 0.94504 0.97233 1.98357 1.62289 1.46590 1.96854 1.22775 0.94042 0.89210 0.98174 1.67620 1.07335 1.17904 1.24175 1.21541 0.95547 0.99190 0.96027 0.93092 0.95284 0.90660 0.93940 0.92995 0.85925 0.83028 0.84171 0.82182 0.94154 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 12.19 55.43 0.68 -24.24 16 2 C 0.07 1.77 5.19 -17.82 -0.09 1.68 16 3 Si 0.88 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.39 6.76 -34.44 -0.23 -13.63 16 8 H 0.05 1.44 6.70 -52.48 -0.35 1.09 16 9 C 0.04 1.00 2.46 -91.65 -0.23 0.78 16 10 H 0.04 0.97 8.09 -51.93 -0.42 0.55 16 11 C -0.10 -2.26 5.47 -26.65 -0.15 -2.40 16 12 C 0.07 1.39 6.34 -3.84 -0.02 1.37 16 13 N -0.69 -11.62 5.70 -107.99 -0.62 -12.23 16 14 C 0.14 2.64 2.70 -68.87 -0.19 2.46 16 15 H 0.07 1.48 6.68 -51.93 -0.35 1.14 16 16 C 0.15 2.51 6.17 -82.59 -0.51 2.00 16 17 C -0.15 -2.01 9.18 -39.45 -0.36 -2.38 16 18 C -0.07 -0.80 9.98 -39.24 -0.39 -1.19 16 19 C -0.11 -1.29 6.34 -39.36 -0.25 -1.54 16 20 Cl -0.07 -0.73 28.99 -51.86 -1.50 -2.23 16 21 C 0.12 1.58 10.99 -17.51 -0.19 1.39 16 22 N -0.46 -7.66 9.90 -9.44 -0.09 -7.76 16 23 C -0.08 -1.79 4.69 -26.65 -0.13 -1.92 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.87 6.89 -51.93 -0.36 1.52 16 27 H 0.04 0.90 7.31 -51.92 -0.38 0.52 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.32 4.54 7.26 -39.29 -0.29 4.26 16 30 H 0.15 1.77 6.22 -52.48 -0.33 1.44 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.37 7.97 -51.93 -0.41 0.96 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -27.91 289.90 -9.06 -36.97 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.13 Total: 2.64 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.74 Total: -13.38 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.03 Total: -44.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.91 -9.06 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.364 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds