Wall clock time and date at job start Mon Mar 30 2020 08:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00281 * 2 1 4 4 H 1.48497 * 109.47160 * 274.99296 * 3 2 1 5 5 H 1.48507 * 109.46820 * 34.99015 * 3 2 1 6 6 H 1.48497 * 109.47208 * 154.98942 * 3 2 1 7 7 C 1.37877 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99400 * 189.53130 * 7 2 1 9 9 C 1.50700 * 120.00426 * 9.52105 * 7 2 1 10 10 H 1.09002 * 109.52451 * 305.56897 * 9 7 2 11 11 C 1.53125 * 109.56894 * 65.72133 * 9 7 2 12 12 C 1.53033 * 109.27846 * 62.28569 * 11 9 7 13 13 N 1.46847 * 109.52435 * 59.17461 * 12 11 9 14 14 C 1.46845 * 111.19802 * 298.25526 * 13 12 11 15 15 H 1.08992 * 109.46634 * 301.72564 * 14 13 12 16 16 C 1.50700 * 109.46290 * 181.74507 * 14 13 12 17 17 C 1.38231 * 119.60271 * 5.00752 * 16 14 13 18 18 C 1.38609 * 119.17647 * 179.97438 * 17 16 14 19 19 C 1.38778 * 118.41105 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.43104 * 180.02562 * 19 18 17 21 21 C 1.38310 * 119.13436 * 359.97438 * 19 18 17 22 22 N 1.31847 * 119.60644 * 184.73213 * 16 14 13 23 23 C 1.53040 * 109.52013 * 61.74594 * 14 13 12 24 24 H 0.97007 * 120.00008 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.49921 * 182.22433 * 11 9 7 26 26 H 1.08997 * 109.50604 * 302.33836 * 11 9 7 27 27 H 1.09008 * 109.46280 * 299.16049 * 12 11 9 28 28 H 1.09001 * 109.46325 * 179.19675 * 12 11 9 29 29 H 1.00900 * 110.99947 * 174.16277 * 13 12 11 30 30 H 1.08005 * 120.41641 * 0.02562 * 17 16 14 31 31 H 1.08002 * 120.79394 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.62202 * 180.02562 * 21 19 18 33 33 H 1.08998 * 109.50738 * 60.75896 * 23 14 13 34 34 H 1.09001 * 109.50611 * 180.87810 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0044 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1544 9 6 1.2665 -2.4901 -0.2170 10 1 0.4545 -2.5720 0.5055 11 6 0.6936 -2.5232 -1.6366 12 6 1.8422 -2.4693 -2.6464 13 7 2.7369 -3.6140 -2.4336 14 6 3.3360 -3.5777 -1.0934 15 1 3.8869 -2.6459 -0.9669 16 6 4.2775 -4.7434 -0.9325 17 6 4.5292 -5.5717 -2.0102 18 6 5.3970 -6.6409 -1.8525 19 6 5.9821 -6.8386 -0.6097 20 17 7.0775 -8.1610 -0.3540 21 6 5.6820 -5.9678 0.4221 22 7 4.8554 -4.9578 0.2330 23 6 2.2319 -3.6648 -0.0372 24 1 -0.4850 0.8401 -0.0004 25 1 0.1268 -3.4433 -1.7789 26 1 0.0382 -1.6649 -1.7847 27 1 2.4002 -1.5424 -2.5127 28 1 1.4384 -2.5070 -3.6582 29 1 3.4492 -3.6538 -3.1471 30 1 4.0562 -5.3875 -2.9635 31 1 5.6120 -7.3048 -2.6768 32 1 6.1333 -6.1141 1.3924 33 1 1.6894 -4.6029 -0.1543 34 1 2.6756 -3.6222 0.9575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:59 Heat of formation + Delta-G solvation = 6.381375 kcal Electronic energy + Delta-G solvation = -17938.431682 eV Core-core repulsion = 15088.766357 eV Total energy + Delta-G solvation = -2849.665325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50353 -39.35613 -37.59149 -35.15673 -33.61325 -33.08343 -32.33558 -30.06284 -27.22699 -25.21483 -24.92648 -23.40635 -22.39774 -20.52485 -18.47416 -17.78057 -17.56467 -17.14232 -16.62004 -16.40899 -15.57578 -15.07446 -14.90385 -14.58914 -14.35368 -14.14168 -13.84843 -13.50533 -13.24584 -13.01137 -12.82497 -12.73202 -12.45410 -12.24259 -12.11093 -11.83339 -11.21158 -10.96340 -10.82863 -10.79997 -10.48699 -10.31540 -9.80243 -9.26327 -8.10675 -6.16486 -0.08630 0.21754 1.01812 1.38082 1.40954 1.49763 2.43668 2.64170 2.97030 3.20383 3.62708 3.70780 3.80469 4.06896 4.17120 4.35837 4.47858 4.59123 4.66354 4.73971 4.80070 4.93286 4.99619 5.02766 5.19504 5.22954 5.38046 5.52428 5.57432 5.62334 5.80923 5.93312 6.23853 6.40201 6.62592 6.92739 6.94548 7.48777 8.98483 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.004616 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.726999 B = 6064.196020 C = 6401.412866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.047 0.953 9 C 0.037 3.963 10 H -0.007 1.007 11 C -0.094 4.094 12 C 0.081 3.919 13 N -0.671 5.671 14 C 0.153 3.847 15 H 0.043 0.957 16 C 0.128 3.872 17 C -0.144 4.144 18 C -0.059 4.059 19 C -0.099 4.099 20 Cl -0.049 7.049 21 C 0.106 3.894 22 N -0.496 5.496 23 C -0.075 4.075 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.021 0.979 28 H 0.082 0.918 29 H 0.347 0.653 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.042 0.958 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.950 -13.629 -6.492 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.018 3.982 10 H 0.012 0.988 11 C -0.133 4.133 12 C -0.048 4.048 13 N -0.305 5.305 14 C 0.043 3.957 15 H 0.061 0.939 16 C -0.009 4.009 17 C -0.163 4.163 18 C -0.085 4.085 19 C -0.128 4.128 20 Cl -0.020 7.020 21 C -0.052 4.052 22 N -0.206 5.206 23 C -0.113 4.113 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.188 0.812 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.061 0.939 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.207 -13.466 -5.595 18.391 hybrid contribution 0.925 1.252 -0.238 1.574 sum 12.132 -12.214 -5.834 18.177 Atomic orbital electron populations 1.70084 1.07143 1.27039 1.51405 1.25588 0.95354 1.01804 0.95092 0.85831 0.78896 0.80518 0.78198 1.19865 1.21227 1.19788 1.21320 0.93556 0.91936 1.48378 0.93503 1.18733 0.93489 0.92574 0.93393 0.98841 1.21340 0.96849 0.98606 0.96454 1.21685 0.93963 0.90598 0.98544 1.60419 1.22963 1.44675 1.02407 1.19915 0.92336 0.92678 0.90810 0.93920 1.21411 0.93994 0.96111 0.89403 1.22183 0.98273 0.94565 1.01323 1.21874 0.93299 0.96912 0.96454 1.22142 0.99211 0.94371 0.97090 1.98372 1.61459 1.45363 1.96821 1.23045 0.93761 0.88921 0.99497 1.67488 1.08567 1.19574 1.24968 1.21317 0.95792 0.97680 0.96502 0.93122 0.94522 0.93572 0.96058 0.89928 0.83292 0.81190 0.80732 0.80594 0.93885 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 12.19 21.45 0.26 -52.88 16 2 C 0.02 1.13 5.19 84.65 0.44 1.56 16 3 Si 0.94 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.51 -27.93 6.76 25.60 0.17 -27.75 16 8 H 0.05 2.57 6.70 -2.91 -0.02 2.55 16 9 C 0.04 1.86 2.46 -11.46 -0.03 1.83 16 10 H -0.01 -0.38 8.09 -2.39 -0.02 -0.40 16 11 C -0.09 -4.30 5.47 30.65 0.17 -4.13 16 12 C 0.08 3.04 6.34 86.32 0.55 3.59 16 13 N -0.67 -21.59 5.70 -495.57 -2.82 -24.42 16 14 C 0.15 5.68 2.70 44.19 0.12 5.80 16 15 H 0.04 1.82 6.68 -2.39 -0.02 1.81 16 16 C 0.13 4.04 6.17 42.55 0.26 4.30 16 17 C -0.14 -3.38 9.18 22.36 0.21 -3.18 16 18 C -0.06 -1.15 9.98 22.49 0.22 -0.93 16 19 C -0.10 -2.13 6.34 22.42 0.14 -1.98 16 20 Cl -0.05 -0.87 28.99 -2.72 -0.08 -0.95 16 21 C 0.11 2.72 10.99 84.70 0.93 3.65 16 22 N -0.50 -16.26 9.90 -183.79 -1.82 -18.08 16 23 C -0.07 -3.25 4.69 30.64 0.14 -3.11 16 24 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 2.36 6.89 -2.39 -0.02 2.35 16 27 H 0.02 0.89 7.31 -2.38 -0.02 0.87 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.35 8.73 7.26 -89.69 -0.65 8.07 16 30 H 0.17 3.28 6.22 -2.91 -0.02 3.26 16 31 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 2.09 7.97 -2.39 -0.02 2.07 16 Total: -1.00 -62.23 289.90 1.36 -60.87 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.47 Total: 10.21 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.33 Total: -20.34 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -4.38 Total: -95.37 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -62.23 1.36 -60.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.251 kcal (2) G-P(sol) polarization free energy of solvation -62.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds