Wall clock time and date at job start Mon Mar 30 2020 08:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00353 * 2 1 4 4 H 1.48501 * 109.47106 * 270.00386 * 3 2 1 5 5 H 1.48506 * 109.47003 * 30.00054 * 3 2 1 6 6 H 1.48497 * 109.47030 * 149.99933 * 3 2 1 7 7 C 1.37877 * 119.99322 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00456 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.57479 * 300.15832 * 9 7 2 11 11 C 1.53124 * 109.52561 * 60.31643 * 9 7 2 12 12 C 1.53027 * 109.28083 * 177.55775 * 11 9 7 13 13 N 1.46846 * 109.52778 * 300.82020 * 12 11 9 14 14 C 1.46852 * 111.19478 * 61.74197 * 13 12 11 15 15 H 1.09004 * 109.45497 * 58.27172 * 14 13 12 16 16 C 1.50698 * 109.46166 * 178.24104 * 14 13 12 17 17 C 1.38230 * 119.60821 * 245.30766 * 16 14 13 18 18 C 1.38605 * 119.17911 * 180.25443 * 17 16 14 19 19 C 1.38788 * 118.40773 * 359.50084 * 18 17 16 20 20 Cl 1.73591 * 120.43101 * 180.23392 * 19 18 17 21 21 C 1.38307 * 119.13531 * 0.25416 * 19 18 17 22 22 N 1.31852 * 119.60249 * 65.05724 * 16 14 13 23 23 C 1.53036 * 109.52461 * 298.26014 * 14 13 12 24 24 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50158 * 297.50518 * 11 9 7 26 26 H 1.09002 * 109.49777 * 57.57762 * 11 9 7 27 27 H 1.09007 * 109.46485 * 60.83890 * 12 11 9 28 28 H 1.08998 * 109.46381 * 180.81159 * 12 11 9 29 29 H 1.00898 * 110.99916 * 297.64556 * 13 12 11 30 30 H 1.07999 * 120.41184 * 0.02801 * 17 16 14 31 31 H 1.08002 * 120.79976 * 179.78163 * 18 17 16 32 32 H 1.07995 * 119.62460 * 179.97438 * 21 19 18 33 33 H 1.08993 * 109.50412 * 179.12378 * 23 14 13 34 34 H 1.09002 * 109.49724 * 299.23818 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6218 -2.5576 0.8877 11 6 0.3756 -2.5847 -1.2540 12 6 -0.3400 -3.9371 -1.2792 13 7 0.6536 -5.0183 -1.2796 14 6 1.4749 -4.9851 -0.0627 15 1 0.8308 -5.0712 0.8124 16 6 2.4499 -6.1340 -0.0835 17 6 2.3435 -7.1372 0.8615 18 6 3.2482 -8.1870 0.8375 19 6 4.2253 -8.1941 -0.1482 20 17 5.3814 -9.4864 -0.2309 21 6 4.2662 -7.1579 -1.0633 22 7 3.3912 -6.1728 -1.0059 23 6 2.2448 -3.6639 -0.0012 24 1 -0.4849 0.8401 0.0004 25 1 -0.3623 -1.7826 -1.2380 26 1 1.0007 -2.4864 -2.1416 27 1 -0.9755 -4.0282 -0.3983 28 1 -0.9529 -4.0070 -2.1778 29 1 1.2306 -4.9788 -2.1065 30 1 1.5673 -7.1016 1.6116 31 1 3.1914 -8.9828 1.5654 32 1 5.0234 -7.1552 -1.8333 33 1 2.8423 -3.6331 0.9099 34 1 2.8993 -3.5835 -0.8691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259961772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:04 Heat of formation + Delta-G solvation = 14.476185 kcal Electronic energy + Delta-G solvation = -17697.191357 eV Core-core repulsion = 14847.877050 eV Total energy + Delta-G solvation = -2849.314307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40529 -37.87433 -36.69007 -33.38337 -32.48853 -31.88334 -30.33621 -28.78326 -25.29145 -24.10103 -23.47728 -21.76912 -20.97807 -19.19475 -17.27481 -16.55449 -16.42007 -15.68821 -14.74857 -14.43741 -14.34873 -13.77792 -13.55983 -13.28757 -13.11819 -12.69461 -12.46210 -11.94128 -11.86382 -11.58246 -11.31866 -11.13883 -10.90072 -10.65619 -10.34384 -10.08496 -9.89437 -9.58981 -9.52554 -9.25872 -8.89848 -8.85595 -8.39560 -7.60833 -5.99642 -4.06633 0.90719 1.14066 1.90886 3.29261 3.36100 3.39560 3.65374 4.32458 4.42352 4.58398 4.64570 4.87769 5.09759 5.27743 5.30117 5.56466 5.61651 5.82132 5.93053 6.01986 6.12095 6.37039 6.42133 6.49047 6.57285 6.72149 7.03675 7.08353 7.33823 7.50241 7.74515 7.92742 7.94352 7.96289 8.12814 8.43120 8.96722 9.58240 11.05117 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.004258 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.773024 B = 6574.604988 C = 7073.022742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.052 3.948 10 H 0.025 0.975 11 C -0.145 4.145 12 C 0.055 3.945 13 N -0.680 5.680 14 C 0.133 3.867 15 H 0.089 0.911 16 C 0.162 3.838 17 C -0.152 4.152 18 C -0.066 4.066 19 C -0.102 4.102 20 Cl -0.067 7.067 21 C 0.117 3.883 22 N -0.458 5.458 23 C -0.129 4.129 24 H 0.260 0.740 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.340 0.660 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.047 0.953 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 -16.041 0.245 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.043 0.957 11 C -0.184 4.184 12 C -0.074 4.074 13 N -0.309 5.309 14 C 0.022 3.978 15 H 0.107 0.893 16 C 0.024 3.976 17 C -0.172 4.172 18 C -0.093 4.093 19 C -0.131 4.131 20 Cl -0.039 7.039 21 C -0.041 4.041 22 N -0.166 5.166 23 C -0.169 4.169 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.066 0.934 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.373 -15.819 -0.120 16.412 hybrid contribution 1.185 0.889 0.464 1.552 sum 5.558 -14.930 0.343 15.935 Atomic orbital electron populations 1.69877 1.05835 1.26366 1.50843 1.24955 0.94851 0.99003 0.95106 0.86629 0.79901 0.83587 0.78093 1.20721 1.21244 1.19991 1.21173 0.92851 0.90599 1.50406 0.92844 1.18660 0.92456 0.91444 0.94132 0.95695 1.22268 1.00705 0.96391 0.99041 1.22128 0.94048 0.90380 1.00866 1.60900 1.18415 1.47826 1.03809 1.20598 0.91353 0.90822 0.95006 0.89310 1.21608 0.92412 0.94408 0.89168 1.22028 1.00113 0.94073 1.01013 1.21479 0.92653 0.98556 0.96602 1.22057 0.96194 0.93836 1.01039 1.98362 1.58548 1.48904 1.98040 1.22789 0.96764 0.88071 0.96480 1.67659 1.02977 1.23300 1.22707 1.22290 0.99293 0.94014 1.01286 0.93057 0.88775 0.94564 0.91824 0.92241 0.84240 0.83836 0.84043 0.82160 0.93406 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.37 55.43 0.63 -24.41 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16 10 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 11 C -0.14 -3.29 5.11 -26.65 -0.14 -3.43 16 12 C 0.05 1.02 6.55 -3.84 -0.03 1.00 16 13 N -0.68 -11.87 6.49 -107.99 -0.70 -12.57 16 14 C 0.13 2.30 2.74 -68.87 -0.19 2.11 16 15 H 0.09 1.49 7.87 -51.93 -0.41 1.08 16 16 C 0.16 2.49 5.73 -82.59 -0.47 2.02 16 17 C -0.15 -1.90 9.71 -39.45 -0.38 -2.29 16 18 C -0.07 -0.74 9.98 -39.24 -0.39 -1.13 16 19 C -0.10 -1.19 6.34 -39.35 -0.25 -1.44 16 20 Cl -0.07 -0.68 28.99 -51.86 -1.50 -2.18 16 21 C 0.12 1.52 10.99 -17.51 -0.19 1.32 16 22 N -0.46 -7.13 9.76 -9.45 -0.09 -7.22 16 23 C -0.13 -2.67 4.45 -26.65 -0.12 -2.79 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.34 6.03 8.69 -39.29 -0.34 5.68 16 30 H 0.14 1.49 7.95 -52.49 -0.42 1.08 16 31 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -28.12 296.58 -9.36 -37.49 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.40 Total: 4.42 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.75 Total: -16.25 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.16 Total: -44.20 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.12 -9.36 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.963 kcal (2) G-P(sol) polarization free energy of solvation -28.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds