Wall clock time and date at job start Mon Mar 30 2020 08:04:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86794 * 120.00353 * 2 1
4 4 H 1.48501 * 109.47106 * 270.00386 * 3 2 1
5 5 H 1.48506 * 109.47003 * 30.00054 * 3 2 1
6 6 H 1.48497 * 109.47030 * 149.99933 * 3 2 1
7 7 C 1.37877 * 119.99322 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99537 * 179.97438 * 7 2 1
9 9 C 1.50692 * 120.00456 * 359.97438 * 7 2 1
10 10 H 1.09001 * 109.57479 * 300.15832 * 9 7 2
11 11 C 1.53124 * 109.52561 * 60.31643 * 9 7 2
12 12 C 1.53027 * 109.28083 * 177.55775 * 11 9 7
13 13 N 1.46846 * 109.52778 * 300.82020 * 12 11 9
14 14 C 1.46852 * 111.19478 * 61.74197 * 13 12 11
15 15 H 1.09004 * 109.45497 * 58.27172 * 14 13 12
16 16 C 1.50698 * 109.46166 * 178.24104 * 14 13 12
17 17 C 1.38230 * 119.60821 * 245.30766 * 16 14 13
18 18 C 1.38605 * 119.17911 * 180.25443 * 17 16 14
19 19 C 1.38788 * 118.40773 * 359.50084 * 18 17 16
20 20 Cl 1.73591 * 120.43101 * 180.23392 * 19 18 17
21 21 C 1.38307 * 119.13531 * 0.25416 * 19 18 17
22 22 N 1.31852 * 119.60249 * 65.05724 * 16 14 13
23 23 C 1.53036 * 109.52461 * 298.26014 * 14 13 12
24 24 H 0.96998 * 119.99635 * 359.97438 * 1 2 3
25 25 H 1.09002 * 109.50158 * 297.50518 * 11 9 7
26 26 H 1.09002 * 109.49777 * 57.57762 * 11 9 7
27 27 H 1.09007 * 109.46485 * 60.83890 * 12 11 9
28 28 H 1.08998 * 109.46381 * 180.81159 * 12 11 9
29 29 H 1.00898 * 110.99916 * 297.64556 * 13 12 11
30 30 H 1.07999 * 120.41184 * 0.02801 * 17 16 14
31 31 H 1.08002 * 120.79976 * 179.78163 * 18 17 16
32 32 H 1.07995 * 119.62460 * 179.97438 * 21 19 18
33 33 H 1.08993 * 109.50412 * 179.12378 * 23 14 13
34 34 H 1.09002 * 109.49724 * 299.23818 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4400 0.7000
7 6 2.0044 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 1 0.6218 -2.5576 0.8877
11 6 0.3756 -2.5847 -1.2540
12 6 -0.3400 -3.9371 -1.2792
13 7 0.6536 -5.0183 -1.2796
14 6 1.4749 -4.9851 -0.0627
15 1 0.8308 -5.0712 0.8124
16 6 2.4499 -6.1340 -0.0835
17 6 2.3435 -7.1372 0.8615
18 6 3.2482 -8.1870 0.8375
19 6 4.2253 -8.1941 -0.1482
20 17 5.3814 -9.4864 -0.2309
21 6 4.2662 -7.1579 -1.0633
22 7 3.3912 -6.1728 -1.0059
23 6 2.2448 -3.6639 -0.0012
24 1 -0.4849 0.8401 0.0004
25 1 -0.3623 -1.7826 -1.2380
26 1 1.0007 -2.4864 -2.1416
27 1 -0.9755 -4.0282 -0.3983
28 1 -0.9529 -4.0070 -2.1778
29 1 1.2306 -4.9788 -2.1065
30 1 1.5673 -7.1016 1.6116
31 1 3.1914 -8.9828 1.5654
32 1 5.0234 -7.1552 -1.8333
33 1 2.8423 -3.6331 0.9099
34 1 2.8993 -3.5835 -0.8691
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259961772.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 08:04:04
Heat of formation + Delta-G solvation = -2.689514 kcal
Electronic energy + Delta-G solvation = -17697.935718 eV
Core-core repulsion = 14847.877050 eV
Total energy + Delta-G solvation = -2850.058668 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.088 amu
Computer time = 1.89 seconds
Orbital eigenvalues (eV)
-41.47830 -39.38686 -37.59408 -35.26597 -33.48516 -33.19056 -32.18963 -30.14565
-27.23444 -25.30315 -24.56302 -23.47462 -22.32745 -20.91875 -18.65130 -17.98197
-17.54550 -17.08916 -16.50511 -15.80755 -15.64444 -15.09214 -15.04458 -14.82874
-14.33250 -14.14090 -13.88855 -13.54302 -13.02462 -12.96487 -12.89117 -12.68949
-12.50914 -12.20185 -12.08789 -11.95443 -11.38187 -11.25620 -10.87197 -10.81862
-10.50156 -10.42321 -9.87151 -9.18840 -8.08481 -6.24398 -0.09464 0.21182
1.01809 1.38100 1.39306 1.49020 2.40899 2.62199 3.15619 3.23692
3.48264 3.73405 3.78315 3.96682 4.19970 4.23080 4.45786 4.53423
4.66708 4.69442 4.72948 4.80866 4.91174 5.02967 5.07246 5.22689
5.29863 5.46677 5.51929 5.60570 5.94203 5.96859 6.23745 6.36755
6.48486 6.86044 6.92134 7.43437 8.93078
Molecular weight = 266.09amu
Principal moments of inertia in cm(-1)
A = 0.032559 B = 0.004258 C = 0.003958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 859.773024 B = 6574.604988 C = 7073.022742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.016 3.984
3 Si 0.950 3.050
4 H -0.277 1.277
5 H -0.280 1.280
6 H -0.272 1.272
7 C -0.537 4.537
8 H 0.043 0.957
9 C 0.048 3.952
10 H -0.001 1.001
11 C -0.134 4.134
12 C 0.066 3.934
13 N -0.667 5.667
14 C 0.141 3.859
15 H 0.096 0.904
16 C 0.137 3.863
17 C -0.148 4.148
18 C -0.059 4.059
19 C -0.098 4.098
20 Cl -0.049 7.049
21 C 0.106 3.894
22 N -0.487 5.487
23 C -0.115 4.115
24 H 0.261 0.739
25 H 0.064 0.936
26 H 0.023 0.977
27 H 0.065 0.935
28 H 0.079 0.921
29 H 0.340 0.660
30 H 0.165 0.835
31 H 0.174 0.826
32 H 0.177 0.823
33 H 0.040 0.960
34 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.457 -17.804 0.583 18.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.182 4.182
3 Si 0.776 3.224
4 H -0.202 1.202
5 H -0.206 1.206
6 H -0.197 1.197
7 C -0.575 4.575
8 H 0.062 0.938
9 C 0.029 3.971
10 H 0.017 0.983
11 C -0.174 4.174
12 C -0.063 4.063
13 N -0.296 5.296
14 C 0.030 3.970
15 H 0.114 0.886
16 C -0.001 4.001
17 C -0.168 4.168
18 C -0.086 4.086
19 C -0.127 4.127
20 Cl -0.021 7.021
21 C -0.052 4.052
22 N -0.196 5.196
23 C -0.154 4.154
24 H 0.070 0.930
25 H 0.082 0.918
26 H 0.041 0.959
27 H 0.083 0.917
28 H 0.097 0.903
29 H 0.157 0.843
30 H 0.183 0.817
31 H 0.191 0.809
32 H 0.194 0.806
33 H 0.059 0.941
34 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 4.990 -17.596 0.217 18.291
hybrid contribution 1.071 1.367 0.367 1.775
sum 6.061 -16.229 0.584 17.333
Atomic orbital electron populations
1.69998 1.06914 1.27098 1.51157 1.25673 0.95702 1.02090 0.94784
0.85686 0.78760 0.79794 0.78198 1.20243 1.20576 1.19684 1.21527
0.92689 0.92479 1.50786 0.93848 1.18627 0.92895 0.91945 0.93601
0.98278 1.22083 0.99686 0.98031 0.97608 1.21992 0.94116 0.88249
1.01934 1.60918 1.18262 1.46383 1.04024 1.20463 0.91478 0.90006
0.95039 0.88649 1.21310 0.92817 0.94944 0.90983 1.22217 1.00789
0.93432 1.00395 1.21826 0.91469 0.98626 0.96632 1.22148 0.96308
0.93729 1.00497 1.98374 1.57874 1.47862 1.97965 1.23052 0.96725
0.88017 0.97404 1.67539 1.03798 1.24769 1.23508 1.22057 0.98320
0.94901 1.00148 0.92981 0.91784 0.95859 0.91670 0.90255 0.84260
0.81703 0.80859 0.80633 0.94117 0.93490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -52.44 11.37 21.45 0.24 -52.20 16
2 C 0.02 0.92 5.31 84.65 0.45 1.37 16
3 Si 0.95 44.15 29.54 68.60 2.03 46.18 16
4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16
6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
7 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16
8 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16
9 C 0.05 2.40 2.16 -11.46 -0.02 2.37 16
10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16
11 C -0.13 -6.29 5.11 30.64 0.16 -6.13 16
12 C 0.07 2.46 6.55 86.32 0.57 3.03 16
13 N -0.67 -22.77 6.49 -495.56 -3.22 -25.99 16
14 C 0.14 4.80 2.74 44.19 0.12 4.92 16
15 H 0.10 3.12 7.87 -2.39 -0.02 3.10 16
16 C 0.14 4.04 5.73 42.55 0.24 4.28 16
17 C -0.15 -3.34 9.71 22.36 0.22 -3.12 16
18 C -0.06 -1.12 9.98 22.49 0.22 -0.90 16
19 C -0.10 -2.02 6.34 22.42 0.14 -1.88 16
20 Cl -0.05 -0.86 28.99 -2.72 -0.08 -0.94 16
21 C 0.11 2.58 10.99 84.70 0.93 3.51 16
22 N -0.49 -14.75 9.76 -183.80 -1.79 -16.55 16
23 C -0.11 -4.84 4.45 30.65 0.14 -4.70 16
24 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16
25 H 0.06 3.38 6.17 -2.39 -0.01 3.37 16
26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16
27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16
28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
29 H 0.34 11.86 8.69 -89.70 -0.78 11.08 16
30 H 0.17 2.92 7.95 -2.91 -0.02 2.90 16
31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16
32 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16
33 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16
34 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16
Total: -1.00 -61.40 296.58 0.89 -60.51
By element:
Atomic # 1 Polarization: 15.87 SS G_CDS: 0.33 Total: 16.19 kcal
Atomic # 6 Polarization: -30.59 SS G_CDS: 3.38 Total: -27.21 kcal
Atomic # 7 Polarization: -89.96 SS G_CDS: -4.77 Total: -94.73 kcal
Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal
Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal
Total: -61.40 0.89 -60.51 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259961772.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.819 kcal
(2) G-P(sol) polarization free energy of solvation -61.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.580 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.690 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.89 seconds