Wall clock time and date at job start Mon Mar 30 2020 08:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00353 * 2 1 4 4 H 1.48501 * 109.47106 * 270.00386 * 3 2 1 5 5 H 1.48506 * 109.47003 * 30.00054 * 3 2 1 6 6 H 1.48497 * 109.47030 * 149.99933 * 3 2 1 7 7 C 1.37877 * 119.99322 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00456 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.57479 * 300.15832 * 9 7 2 11 11 C 1.53124 * 109.52561 * 60.31643 * 9 7 2 12 12 C 1.53027 * 109.28083 * 177.55775 * 11 9 7 13 13 N 1.46846 * 109.52778 * 300.82020 * 12 11 9 14 14 C 1.46852 * 111.19478 * 61.74197 * 13 12 11 15 15 H 1.09004 * 109.45497 * 58.27172 * 14 13 12 16 16 C 1.50698 * 109.46166 * 178.24104 * 14 13 12 17 17 C 1.38230 * 119.60821 * 245.30766 * 16 14 13 18 18 C 1.38605 * 119.17911 * 180.25443 * 17 16 14 19 19 C 1.38788 * 118.40773 * 359.50084 * 18 17 16 20 20 Cl 1.73591 * 120.43101 * 180.23392 * 19 18 17 21 21 C 1.38307 * 119.13531 * 0.25416 * 19 18 17 22 22 N 1.31852 * 119.60249 * 65.05724 * 16 14 13 23 23 C 1.53036 * 109.52461 * 298.26014 * 14 13 12 24 24 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50158 * 297.50518 * 11 9 7 26 26 H 1.09002 * 109.49777 * 57.57762 * 11 9 7 27 27 H 1.09007 * 109.46485 * 60.83890 * 12 11 9 28 28 H 1.08998 * 109.46381 * 180.81159 * 12 11 9 29 29 H 1.00898 * 110.99916 * 297.64556 * 13 12 11 30 30 H 1.07999 * 120.41184 * 0.02801 * 17 16 14 31 31 H 1.08002 * 120.79976 * 179.78163 * 18 17 16 32 32 H 1.07995 * 119.62460 * 179.97438 * 21 19 18 33 33 H 1.08993 * 109.50412 * 179.12378 * 23 14 13 34 34 H 1.09002 * 109.49724 * 299.23818 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6218 -2.5576 0.8877 11 6 0.3756 -2.5847 -1.2540 12 6 -0.3400 -3.9371 -1.2792 13 7 0.6536 -5.0183 -1.2796 14 6 1.4749 -4.9851 -0.0627 15 1 0.8308 -5.0712 0.8124 16 6 2.4499 -6.1340 -0.0835 17 6 2.3435 -7.1372 0.8615 18 6 3.2482 -8.1870 0.8375 19 6 4.2253 -8.1941 -0.1482 20 17 5.3814 -9.4864 -0.2309 21 6 4.2662 -7.1579 -1.0633 22 7 3.3912 -6.1728 -1.0059 23 6 2.2448 -3.6639 -0.0012 24 1 -0.4849 0.8401 0.0004 25 1 -0.3623 -1.7826 -1.2380 26 1 1.0007 -2.4864 -2.1416 27 1 -0.9755 -4.0282 -0.3983 28 1 -0.9529 -4.0070 -2.1778 29 1 1.2306 -4.9788 -2.1065 30 1 1.5673 -7.1016 1.6116 31 1 3.1914 -8.9828 1.5654 32 1 5.0234 -7.1552 -1.8333 33 1 2.8423 -3.6331 0.9099 34 1 2.8993 -3.5835 -0.8691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:04 Heat of formation + Delta-G solvation = -2.689514 kcal Electronic energy + Delta-G solvation = -17697.935718 eV Core-core repulsion = 14847.877050 eV Total energy + Delta-G solvation = -2850.058668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.47830 -39.38686 -37.59408 -35.26597 -33.48516 -33.19056 -32.18963 -30.14565 -27.23444 -25.30315 -24.56302 -23.47462 -22.32745 -20.91875 -18.65130 -17.98197 -17.54550 -17.08916 -16.50511 -15.80755 -15.64444 -15.09214 -15.04458 -14.82874 -14.33250 -14.14090 -13.88855 -13.54302 -13.02462 -12.96487 -12.89117 -12.68949 -12.50914 -12.20185 -12.08789 -11.95443 -11.38187 -11.25620 -10.87197 -10.81862 -10.50156 -10.42321 -9.87151 -9.18840 -8.08481 -6.24398 -0.09464 0.21182 1.01809 1.38100 1.39306 1.49020 2.40899 2.62199 3.15619 3.23692 3.48264 3.73405 3.78315 3.96682 4.19970 4.23080 4.45786 4.53423 4.66708 4.69442 4.72948 4.80866 4.91174 5.02967 5.07246 5.22689 5.29863 5.46677 5.51929 5.60570 5.94203 5.96859 6.23745 6.36755 6.48486 6.86044 6.92134 7.43437 8.93078 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.004258 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.773024 B = 6574.604988 C = 7073.022742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.043 0.957 9 C 0.048 3.952 10 H -0.001 1.001 11 C -0.134 4.134 12 C 0.066 3.934 13 N -0.667 5.667 14 C 0.141 3.859 15 H 0.096 0.904 16 C 0.137 3.863 17 C -0.148 4.148 18 C -0.059 4.059 19 C -0.098 4.098 20 Cl -0.049 7.049 21 C 0.106 3.894 22 N -0.487 5.487 23 C -0.115 4.115 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.340 0.660 30 H 0.165 0.835 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.040 0.960 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -17.804 0.583 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.029 3.971 10 H 0.017 0.983 11 C -0.174 4.174 12 C -0.063 4.063 13 N -0.296 5.296 14 C 0.030 3.970 15 H 0.114 0.886 16 C -0.001 4.001 17 C -0.168 4.168 18 C -0.086 4.086 19 C -0.127 4.127 20 Cl -0.021 7.021 21 C -0.052 4.052 22 N -0.196 5.196 23 C -0.154 4.154 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.191 0.809 32 H 0.194 0.806 33 H 0.059 0.941 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.990 -17.596 0.217 18.291 hybrid contribution 1.071 1.367 0.367 1.775 sum 6.061 -16.229 0.584 17.333 Atomic orbital electron populations 1.69998 1.06914 1.27098 1.51157 1.25673 0.95702 1.02090 0.94784 0.85686 0.78760 0.79794 0.78198 1.20243 1.20576 1.19684 1.21527 0.92689 0.92479 1.50786 0.93848 1.18627 0.92895 0.91945 0.93601 0.98278 1.22083 0.99686 0.98031 0.97608 1.21992 0.94116 0.88249 1.01934 1.60918 1.18262 1.46383 1.04024 1.20463 0.91478 0.90006 0.95039 0.88649 1.21310 0.92817 0.94944 0.90983 1.22217 1.00789 0.93432 1.00395 1.21826 0.91469 0.98626 0.96632 1.22148 0.96308 0.93729 1.00497 1.98374 1.57874 1.47862 1.97965 1.23052 0.96725 0.88017 0.97404 1.67539 1.03798 1.24769 1.23508 1.22057 0.98320 0.94901 1.00148 0.92981 0.91784 0.95859 0.91670 0.90255 0.84260 0.81703 0.80859 0.80633 0.94117 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.44 11.37 21.45 0.24 -52.20 16 2 C 0.02 0.92 5.31 84.65 0.45 1.37 16 3 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 8 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16 9 C 0.05 2.40 2.16 -11.46 -0.02 2.37 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C -0.13 -6.29 5.11 30.64 0.16 -6.13 16 12 C 0.07 2.46 6.55 86.32 0.57 3.03 16 13 N -0.67 -22.77 6.49 -495.56 -3.22 -25.99 16 14 C 0.14 4.80 2.74 44.19 0.12 4.92 16 15 H 0.10 3.12 7.87 -2.39 -0.02 3.10 16 16 C 0.14 4.04 5.73 42.55 0.24 4.28 16 17 C -0.15 -3.34 9.71 22.36 0.22 -3.12 16 18 C -0.06 -1.12 9.98 22.49 0.22 -0.90 16 19 C -0.10 -2.02 6.34 22.42 0.14 -1.88 16 20 Cl -0.05 -0.86 28.99 -2.72 -0.08 -0.94 16 21 C 0.11 2.58 10.99 84.70 0.93 3.51 16 22 N -0.49 -14.75 9.76 -183.80 -1.79 -16.55 16 23 C -0.11 -4.84 4.45 30.65 0.14 -4.70 16 24 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 25 H 0.06 3.38 6.17 -2.39 -0.01 3.37 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.34 11.86 8.69 -89.70 -0.78 11.08 16 30 H 0.17 2.92 7.95 -2.91 -0.02 2.90 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 Total: -1.00 -61.40 296.58 0.89 -60.51 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.33 Total: 16.19 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.38 Total: -27.21 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -4.77 Total: -94.73 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -61.40 0.89 -60.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.819 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds