Wall clock time and date at job start Mon Mar 30 2020 08:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47253 * 270.00627 * 3 2 1 5 5 H 1.48494 * 109.47067 * 30.00675 * 3 2 1 6 6 H 1.48505 * 109.46813 * 150.00503 * 3 2 1 7 7 C 1.37879 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99777 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99868 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.57596 * 60.15426 * 9 7 2 11 11 C 1.53123 * 109.52399 * 299.99694 * 9 7 2 12 12 C 1.53039 * 109.31189 * 182.46470 * 11 9 7 13 13 N 1.46842 * 109.52266 * 59.15550 * 12 11 9 14 14 C 1.46849 * 111.20050 * 298.25785 * 13 12 11 15 15 H 1.09002 * 109.46350 * 301.73871 * 14 13 12 16 16 C 1.50703 * 109.46110 * 181.75949 * 14 13 12 17 17 C 1.38235 * 119.60259 * 5.00047 * 16 14 13 18 18 C 1.38605 * 119.17526 * 179.97438 * 17 16 14 19 19 C 1.38782 * 118.40966 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 120.43175 * 179.97438 * 19 18 17 21 21 C 1.38310 * 119.13473 * 0.02562 * 19 18 17 22 22 N 1.31849 * 119.60218 * 184.73430 * 16 14 13 23 23 C 1.53036 * 109.52274 * 61.74759 * 14 13 12 24 24 H 0.96998 * 120.00104 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50371 * 62.50019 * 11 9 7 26 26 H 1.09003 * 109.50070 * 302.42179 * 11 9 7 27 27 H 1.08995 * 109.46501 * 179.17754 * 12 11 9 28 28 H 1.09002 * 109.45552 * 299.15457 * 12 11 9 29 29 H 1.00903 * 110.99924 * 174.16340 * 13 12 11 30 30 H 1.08008 * 120.41399 * 0.02562 * 17 16 14 31 31 H 1.07998 * 120.79577 * 180.02562 * 18 17 16 32 32 H 1.08006 * 119.62319 * 179.97438 * 21 19 18 33 33 H 1.09000 * 109.50390 * 60.75234 * 23 14 13 34 34 H 1.08997 * 109.50400 * 180.83976 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8771 -0.6831 0.8896 11 6 4.0228 -0.4722 -1.2510 12 6 5.5519 -0.5286 -1.2782 13 7 5.9912 -1.9297 -1.2860 14 6 5.5531 -2.6304 -0.0722 15 1 5.9505 -2.1202 0.8052 16 6 6.0605 -4.0492 -0.1007 17 6 6.8992 -4.4541 -1.1222 18 6 7.3610 -5.7608 -1.1395 19 6 6.9595 -6.6165 -0.1233 20 17 7.5058 -8.2640 -0.0939 21 6 6.1175 -6.1399 0.8650 22 7 5.7034 -4.8879 0.8520 23 6 4.0241 -2.6370 -0.0091 24 1 -0.4850 0.8400 0.0004 25 1 3.6972 0.5678 -1.2294 26 1 3.6248 -0.9597 -2.1411 27 1 5.9179 -0.0281 -2.1746 28 1 5.9493 -0.0284 -0.3950 29 1 6.9918 -1.9943 -1.3996 30 1 7.1916 -3.7606 -1.8969 31 1 8.0176 -6.1049 -1.9249 32 1 5.7997 -6.7991 1.6594 33 1 3.6262 -3.1590 -0.8793 34 1 3.6995 -3.1441 0.8995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259961775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:08 Heat of formation + Delta-G solvation = 31.173843 kcal Electronic energy + Delta-G solvation = -17774.528825 eV Core-core repulsion = 14925.938583 eV Total energy + Delta-G solvation = -2848.590243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51244 -38.06357 -36.74099 -33.58136 -32.67818 -31.95602 -30.98835 -29.04996 -25.70890 -24.10135 -23.64488 -21.75460 -21.04464 -18.92284 -17.54700 -16.76662 -16.52509 -16.14085 -15.48267 -14.66761 -14.31079 -13.99649 -13.84157 -13.29733 -13.07235 -12.83202 -12.75515 -12.26978 -12.06769 -11.84112 -11.68068 -11.37871 -10.93105 -10.66842 -10.17101 -9.99788 -9.93222 -9.69599 -9.55852 -9.18171 -8.95525 -8.82596 -8.50733 -8.18887 -6.04352 -4.02848 0.84743 1.09095 1.87073 3.26836 3.36817 3.39609 3.59053 3.98160 4.42302 4.53408 4.60507 4.65817 4.96488 5.15750 5.25813 5.50107 5.58383 5.66619 5.72878 5.79704 5.82209 5.93883 6.08569 6.27713 6.41979 6.45215 6.71665 6.77163 6.93310 7.18249 7.38179 7.48782 7.62692 7.80200 7.88304 8.56185 9.00618 9.57999 11.09217 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.004412 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.803688 B = 6345.099798 C = 6835.586899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.014 3.986 10 H 0.023 0.977 11 C -0.120 4.120 12 C 0.059 3.941 13 N -0.681 5.681 14 C 0.133 3.867 15 H 0.058 0.942 16 C 0.152 3.848 17 C -0.150 4.150 18 C -0.067 4.067 19 C -0.102 4.102 20 Cl -0.066 7.066 21 C 0.119 3.881 22 N -0.461 5.461 23 C -0.078 4.078 24 H 0.263 0.737 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.330 0.670 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.062 0.938 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.646 -9.852 -1.947 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.005 4.005 10 H 0.041 0.959 11 C -0.158 4.158 12 C -0.069 4.069 13 N -0.314 5.314 14 C 0.022 3.978 15 H 0.075 0.925 16 C 0.014 3.986 17 C -0.170 4.170 18 C -0.094 4.094 19 C -0.131 4.131 20 Cl -0.037 7.037 21 C -0.040 4.040 22 N -0.170 5.170 23 C -0.116 4.116 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.148 0.852 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.080 0.920 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.437 -9.789 -1.646 19.202 hybrid contribution 1.601 0.811 -0.143 1.800 sum 18.038 -8.978 -1.788 20.228 Atomic orbital electron populations 1.69901 1.06275 1.26833 1.51060 1.25022 0.94674 0.98965 0.94605 0.86845 0.79811 0.83712 0.77809 1.20583 1.22595 1.19247 1.21016 0.88675 0.94481 1.50493 0.90823 1.19203 0.96858 0.91545 0.92883 0.95885 1.22065 0.91529 1.00065 1.02112 1.22027 0.98481 0.86943 0.99473 1.60395 1.17182 1.15246 1.38532 1.20445 0.98926 0.86960 0.91431 0.92474 1.21481 0.91396 0.96283 0.89392 1.22035 0.98620 0.95988 1.00344 1.21524 0.98125 0.92906 0.96807 1.22079 1.03349 0.87483 1.00220 1.98365 1.88852 1.18145 1.98340 1.22779 0.92595 0.92192 0.96440 1.67582 1.21707 1.02470 1.25193 1.21463 0.88531 0.99494 1.02113 0.92728 0.93300 0.91166 0.91420 0.95638 0.85184 0.83028 0.84009 0.81965 0.91969 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 21.82 24.35 -169.99 -4.14 17.68 16 4 H -0.28 -6.63 6.89 56.52 0.39 -6.24 16 5 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.51 -14.31 9.15 -34.44 -0.32 -14.62 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.01 0.33 1.75 -91.64 -0.16 0.17 16 10 H 0.02 0.55 7.21 -51.93 -0.37 0.18 16 11 C -0.12 -2.52 4.83 -26.65 -0.13 -2.65 16 12 C 0.06 0.97 6.55 -3.84 -0.03 0.95 16 13 N -0.68 -10.02 5.70 -107.99 -0.62 -10.63 16 14 C 0.13 2.17 2.91 -68.87 -0.20 1.97 16 15 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.15 2.25 6.17 -82.58 -0.51 1.74 16 17 C -0.15 -1.79 9.18 -39.45 -0.36 -2.15 16 18 C -0.07 -0.71 9.98 -39.24 -0.39 -1.11 16 19 C -0.10 -1.16 6.34 -39.35 -0.25 -1.41 16 20 Cl -0.07 -0.64 28.99 -51.86 -1.50 -2.15 16 21 C 0.12 1.49 10.99 -17.51 -0.19 1.30 16 22 N -0.46 -7.06 9.90 -9.44 -0.09 -7.15 16 23 C -0.08 -1.58 4.45 -26.65 -0.12 -1.70 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.05 1.08 3.34 -51.93 -0.17 0.91 16 26 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.33 3.79 7.26 -39.29 -0.29 3.50 16 30 H 0.15 1.54 6.22 -52.48 -0.33 1.21 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.47 7.97 -51.93 -0.41 1.06 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -30.53 286.32 -8.15 -38.68 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.13 Total: 1.86 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.75 Total: -15.63 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.06 Total: -44.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.53 -8.15 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.851 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds