Wall clock time and date at job start Mon Mar 30 2020 08:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47253 * 270.00627 * 3 2 1 5 5 H 1.48494 * 109.47067 * 30.00675 * 3 2 1 6 6 H 1.48505 * 109.46813 * 150.00503 * 3 2 1 7 7 C 1.37879 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99777 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99868 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.57596 * 60.15426 * 9 7 2 11 11 C 1.53123 * 109.52399 * 299.99694 * 9 7 2 12 12 C 1.53039 * 109.31189 * 182.46470 * 11 9 7 13 13 N 1.46842 * 109.52266 * 59.15550 * 12 11 9 14 14 C 1.46849 * 111.20050 * 298.25785 * 13 12 11 15 15 H 1.09002 * 109.46350 * 301.73871 * 14 13 12 16 16 C 1.50703 * 109.46110 * 181.75949 * 14 13 12 17 17 C 1.38235 * 119.60259 * 5.00047 * 16 14 13 18 18 C 1.38605 * 119.17526 * 179.97438 * 17 16 14 19 19 C 1.38782 * 118.40966 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 120.43175 * 179.97438 * 19 18 17 21 21 C 1.38310 * 119.13473 * 0.02562 * 19 18 17 22 22 N 1.31849 * 119.60218 * 184.73430 * 16 14 13 23 23 C 1.53036 * 109.52274 * 61.74759 * 14 13 12 24 24 H 0.96998 * 120.00104 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50371 * 62.50019 * 11 9 7 26 26 H 1.09003 * 109.50070 * 302.42179 * 11 9 7 27 27 H 1.08995 * 109.46501 * 179.17754 * 12 11 9 28 28 H 1.09002 * 109.45552 * 299.15457 * 12 11 9 29 29 H 1.00903 * 110.99924 * 174.16340 * 13 12 11 30 30 H 1.08008 * 120.41399 * 0.02562 * 17 16 14 31 31 H 1.07998 * 120.79577 * 180.02562 * 18 17 16 32 32 H 1.08006 * 119.62319 * 179.97438 * 21 19 18 33 33 H 1.09000 * 109.50390 * 60.75234 * 23 14 13 34 34 H 1.08997 * 109.50400 * 180.83976 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8771 -0.6831 0.8896 11 6 4.0228 -0.4722 -1.2510 12 6 5.5519 -0.5286 -1.2782 13 7 5.9912 -1.9297 -1.2860 14 6 5.5531 -2.6304 -0.0722 15 1 5.9505 -2.1202 0.8052 16 6 6.0605 -4.0492 -0.1007 17 6 6.8992 -4.4541 -1.1222 18 6 7.3610 -5.7608 -1.1395 19 6 6.9595 -6.6165 -0.1233 20 17 7.5058 -8.2640 -0.0939 21 6 6.1175 -6.1399 0.8650 22 7 5.7034 -4.8879 0.8520 23 6 4.0241 -2.6370 -0.0091 24 1 -0.4850 0.8400 0.0004 25 1 3.6972 0.5678 -1.2294 26 1 3.6248 -0.9597 -2.1411 27 1 5.9179 -0.0281 -2.1746 28 1 5.9493 -0.0284 -0.3950 29 1 6.9918 -1.9943 -1.3996 30 1 7.1916 -3.7606 -1.8969 31 1 8.0176 -6.1049 -1.9249 32 1 5.7997 -6.7991 1.6594 33 1 3.6262 -3.1590 -0.8793 34 1 3.6995 -3.1441 0.8995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:06 Heat of formation + Delta-G solvation = 9.950718 kcal Electronic energy + Delta-G solvation = -17775.449129 eV Core-core repulsion = 14925.938583 eV Total energy + Delta-G solvation = -2849.510546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.54358 -39.44888 -37.61476 -35.38726 -33.65532 -33.47127 -32.63204 -30.28540 -27.56983 -25.32972 -24.75720 -23.19046 -22.44762 -20.55009 -18.92166 -18.44398 -17.60850 -17.35894 -16.57650 -16.34455 -15.70761 -15.28044 -15.04951 -14.75933 -14.67800 -14.13201 -14.05718 -13.71225 -13.39336 -13.16559 -13.02503 -12.73170 -12.28174 -12.19419 -12.09106 -11.74965 -11.45713 -11.07130 -10.98447 -10.85174 -10.62610 -10.43498 -9.84290 -9.40747 -8.28857 -6.33054 -0.11775 0.19239 1.00417 1.30524 1.36801 1.47645 2.33727 2.59880 2.87450 3.06302 3.51386 3.65808 3.77993 4.01240 4.06976 4.15615 4.28937 4.35427 4.44336 4.53431 4.70998 4.79516 4.84317 4.90596 4.96226 5.00512 5.09144 5.27195 5.45029 5.52656 5.66831 5.78167 5.99589 6.32141 6.53835 6.73679 6.89510 7.31914 8.88667 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.004412 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.803688 B = 6345.099798 C = 6835.586899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.301 1.301 6 H -0.245 1.245 7 C -0.520 4.520 8 H 0.024 0.976 9 C 0.013 3.987 10 H 0.020 0.980 11 C -0.119 4.119 12 C 0.066 3.934 13 N -0.676 5.676 14 C 0.145 3.855 15 H 0.055 0.945 16 C 0.127 3.873 17 C -0.141 4.141 18 C -0.060 4.060 19 C -0.099 4.099 20 Cl -0.049 7.049 21 C 0.105 3.895 22 N -0.496 5.496 23 C -0.069 4.069 24 H 0.265 0.735 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.357 0.643 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.041 0.959 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.389 -9.526 -3.169 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.229 1.229 6 H -0.169 1.169 7 C -0.558 4.558 8 H 0.042 0.958 9 C -0.006 4.006 10 H 0.038 0.962 11 C -0.156 4.156 12 C -0.063 4.063 13 N -0.311 5.311 14 C 0.034 3.966 15 H 0.073 0.927 16 C -0.010 4.010 17 C -0.161 4.161 18 C -0.087 4.087 19 C -0.128 4.128 20 Cl -0.021 7.021 21 C -0.053 4.053 22 N -0.206 5.206 23 C -0.107 4.107 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.053 0.947 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.193 0.807 32 H 0.193 0.807 33 H 0.060 0.940 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.223 -9.489 -2.876 22.523 hybrid contribution 0.368 0.494 0.260 0.668 sum 20.591 -8.995 -2.617 22.622 Atomic orbital electron populations 1.70072 1.08411 1.28046 1.52913 1.25972 0.95489 1.03322 0.94099 0.85734 0.79006 0.78044 0.78968 1.18568 1.22874 1.16883 1.21354 0.91685 0.92727 1.49990 0.95757 1.19156 0.93449 0.93829 0.94167 0.96236 1.21912 0.95439 0.98686 0.99606 1.21941 0.94593 0.88106 1.01643 1.60248 1.19199 1.14284 1.37339 1.20094 0.95432 0.88851 0.92219 0.92720 1.21296 0.93365 0.95440 0.90923 1.22195 0.97444 0.96947 0.99497 1.21891 0.97671 0.92104 0.96991 1.22164 1.02437 0.88352 0.99801 1.98376 1.88521 1.16878 1.98277 1.23019 0.93114 0.91633 0.97517 1.67471 1.22949 1.03781 1.26358 1.21218 0.92278 0.97109 1.00098 0.92594 0.94060 0.92606 0.88007 0.94687 0.82187 0.80860 0.80749 0.80692 0.94023 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 2 C 0.01 0.44 5.45 84.65 0.46 0.91 16 3 Si 0.96 45.11 24.35 68.60 1.67 46.78 16 4 H -0.26 -11.43 6.89 99.48 0.69 -10.75 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.52 -30.72 9.15 25.60 0.23 -30.49 16 8 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 9 C 0.01 0.61 1.75 -11.46 -0.02 0.59 16 10 H 0.02 0.93 7.21 -2.39 -0.02 0.92 16 11 C -0.12 -4.80 4.83 30.65 0.15 -4.65 16 12 C 0.07 1.91 6.55 86.33 0.57 2.48 16 13 N -0.68 -17.71 5.70 -495.56 -2.82 -20.54 16 14 C 0.14 4.56 2.91 44.19 0.13 4.69 16 15 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 16 C 0.13 3.59 6.17 42.56 0.26 3.85 16 17 C -0.14 -2.93 9.18 22.36 0.21 -2.73 16 18 C -0.06 -1.08 9.98 22.49 0.22 -0.85 16 19 C -0.10 -1.99 6.34 22.42 0.14 -1.85 16 20 Cl -0.05 -0.84 28.99 -2.72 -0.08 -0.92 16 21 C 0.11 2.56 10.99 84.70 0.93 3.49 16 22 N -0.50 -15.09 9.90 -183.78 -1.82 -16.91 16 23 C -0.07 -2.88 4.45 30.65 0.14 -2.74 16 24 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.04 1.73 3.34 -2.39 -0.01 1.72 16 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.36 6.52 7.26 -89.69 -0.65 5.87 16 30 H 0.17 2.75 6.22 -2.91 -0.02 2.73 16 31 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 2.17 7.97 -2.39 -0.02 2.15 16 Total: -1.00 -70.33 286.32 1.06 -69.27 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.39 Total: 10.52 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.42 Total: -27.31 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.34 Total: -98.35 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -70.33 1.06 -69.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.224 kcal (2) G-P(sol) polarization free energy of solvation -70.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds