Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99804 * 2 1 4 4 H 1.48493 * 109.46989 * 264.91314 * 3 2 1 5 5 H 1.48495 * 109.46959 * 144.90947 * 3 2 1 6 6 H 1.48502 * 109.46946 * 24.91201 * 3 2 1 7 7 C 1.37876 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99600 * 4.45529 * 7 2 1 9 9 C 1.50696 * 119.99922 * 184.46017 * 7 2 1 10 10 H 1.08995 * 109.47402 * 4.52145 * 9 7 2 11 11 C 1.50706 * 109.47458 * 124.52606 * 9 7 2 12 12 C 1.38264 * 119.99038 * 244.76001 * 11 9 7 13 13 C 1.38220 * 120.02493 * 179.97438 * 12 11 9 14 14 C 1.38237 * 120.01313 * 0.02562 * 13 12 11 15 15 C 1.38340 * 119.98601 * 0.02562 * 14 13 12 16 16 Cl 1.73592 * 120.01060 * 180.02562 * 15 14 13 17 17 C 1.38189 * 119.99111 * 64.47335 * 11 9 7 18 18 C 1.53009 * 109.46752 * 244.52009 * 9 7 2 19 19 H 1.09001 * 110.74955 * 299.64722 * 18 9 7 20 20 C 1.55308 * 110.84541 * 63.34742 * 18 9 7 21 21 C 1.54937 * 100.93999 * 152.32255 * 20 18 9 22 22 O 1.43641 * 105.14026 * 323.55114 * 21 20 18 23 23 C 1.43244 * 109.97182 * 24.43175 * 22 21 20 24 24 H 0.96997 * 120.00498 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.98883 * 359.96578 * 12 11 9 26 26 H 1.07992 * 119.99512 * 180.02562 * 13 12 11 27 27 H 1.08003 * 120.00745 * 179.97438 * 14 13 12 28 28 H 1.07998 * 120.01162 * 0.02877 * 17 11 9 29 29 H 1.08997 * 111.12053 * 270.23890 * 20 18 9 30 30 H 1.08994 * 111.12516 * 34.40011 * 20 18 9 31 31 H 1.09005 * 110.30855 * 204.63651 * 21 20 18 32 32 H 1.09004 * 110.39892 * 82.51329 * 21 20 18 33 33 H 1.09000 * 109.82764 * 238.77919 * 23 22 21 34 34 H 1.08996 * 109.90611 * 117.84237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6041 1.9844 -1.3945 5 1 3.4887 1.4737 0.8048 6 1 1.3969 2.6814 0.5898 7 6 2.0046 -1.1940 0.0005 8 1 1.4670 -2.1279 -0.0717 9 6 3.5081 -1.1958 0.1020 10 1 3.8638 -0.1757 0.2466 11 6 3.9317 -2.0461 1.2720 12 6 4.5730 -1.4667 2.3512 13 6 4.9613 -2.2458 3.4248 14 6 4.7092 -3.6049 3.4199 15 6 4.0685 -4.1854 2.3399 16 17 3.7510 -5.8920 2.3333 17 6 3.6738 -3.4037 1.2685 18 6 4.1055 -1.7665 -1.1859 19 1 3.7677 -2.7901 -1.3477 20 6 3.7580 -0.8660 -2.4026 21 6 4.9597 -1.1570 -3.3364 22 8 6.0886 -1.3036 -2.4604 23 6 5.6474 -1.6951 -1.1550 24 1 -0.4851 0.8400 -0.0004 25 1 4.7707 -0.4049 2.3552 26 1 5.4618 -1.7926 4.2676 27 1 5.0130 -4.2137 4.2587 28 1 3.1691 -3.8555 0.4273 29 1 2.8192 -1.1733 -2.8633 30 1 3.7278 0.1855 -2.1172 31 1 5.1176 -0.3233 -4.0207 32 1 4.7924 -2.0778 -3.8953 33 1 5.9688 -0.9576 -0.4196 34 1 6.0579 -2.6726 -0.9022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = -41.207029 kcal Electronic energy + Delta-G solvation = -18242.778915 eV Core-core repulsion = 15358.757251 eV Total energy + Delta-G solvation = -2884.021664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.46505 -38.37424 -36.16027 -34.48599 -32.04744 -30.62553 -30.23568 -28.64336 -27.11287 -23.26365 -22.35385 -21.88970 -20.99449 -19.27873 -17.35394 -16.53398 -15.77701 -15.52196 -15.10636 -14.71672 -14.34546 -14.00092 -13.31186 -13.23580 -13.03449 -12.78891 -12.65874 -12.04351 -11.74719 -11.36722 -11.21303 -11.06226 -11.03349 -10.80777 -10.66422 -10.35453 -10.27678 -9.89556 -9.65710 -9.24688 -9.09074 -8.70695 -8.33797 -8.04185 -6.25452 -4.25706 1.67080 1.83849 2.50266 3.13639 3.20616 3.24801 4.17224 4.23660 4.37083 4.97884 5.21414 5.26664 5.31151 5.46902 5.53297 5.62082 5.68808 5.78954 5.88998 5.95739 6.10666 6.12655 6.21950 6.31684 6.48081 6.53367 6.63952 6.70300 6.73910 6.84884 6.99646 7.26425 7.34585 7.42732 7.51686 8.31123 8.79320 9.34833 10.86904 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.008054 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.732128 B = 3475.877664 C = 4253.726980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.502 4.502 8 H 0.079 0.921 9 C 0.048 3.952 10 H 0.056 0.944 11 C -0.018 4.018 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.140 4.140 15 C -0.031 4.031 16 Cl -0.091 7.091 17 C -0.102 4.102 18 C -0.104 4.104 19 H 0.077 0.923 20 C -0.136 4.136 21 C 0.047 3.953 22 O -0.395 6.395 23 C 0.049 3.951 24 H 0.267 0.733 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -3.975 1.543 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.214 1.214 7 C -0.539 4.539 8 H 0.097 0.903 9 C 0.029 3.971 10 H 0.074 0.926 11 C -0.018 4.018 12 C -0.148 4.148 13 C -0.127 4.127 14 C -0.158 4.158 15 C -0.058 4.058 16 Cl -0.063 7.063 17 C -0.120 4.120 18 C -0.123 4.123 19 H 0.096 0.904 20 C -0.174 4.174 21 C -0.030 4.030 22 O -0.315 6.315 23 C -0.028 4.028 24 H 0.077 0.923 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.240 -3.973 1.482 10.166 hybrid contribution -0.053 0.704 0.209 0.737 sum 9.187 -3.268 1.691 9.896 Atomic orbital electron populations 1.69875 1.06225 1.27237 1.49233 1.25045 0.94659 0.98690 0.94089 0.87058 0.80185 0.84084 0.79079 1.19572 1.18832 1.21441 1.20783 0.87584 0.94910 1.50667 0.90343 1.18492 0.97289 0.94359 0.86964 0.92641 1.20494 0.91220 0.93085 0.97038 1.21180 0.99649 0.99878 0.94062 1.20952 1.00319 0.93010 0.98398 1.20778 1.02106 0.95299 0.97660 1.20916 1.03348 0.83985 0.97534 1.98326 1.94704 1.14599 1.98647 1.20875 1.00022 0.93521 0.97615 1.22920 0.91996 1.00082 0.97309 0.90445 1.23135 0.98098 1.00797 0.95340 1.23416 0.86226 1.00078 0.93243 1.88302 1.31569 1.90126 1.21476 1.23341 0.95764 0.99132 0.84529 0.92334 0.86278 0.86060 0.86059 0.85279 0.89490 0.91033 0.90662 0.92753 0.91848 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.96 55.43 0.77 -24.60 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.86 25.91 -169.99 -4.40 15.46 16 4 H -0.27 -5.98 6.80 56.52 0.38 -5.60 16 5 H -0.26 -5.70 6.21 56.52 0.35 -5.35 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.50 -12.60 8.05 -34.44 -0.28 -12.88 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.05 1.00 1.28 -92.92 -0.12 0.88 16 10 H 0.06 1.20 4.19 -51.93 -0.22 0.98 16 11 C -0.02 -0.34 4.24 -104.63 -0.44 -0.78 16 12 C -0.13 -2.27 9.67 -39.58 -0.38 -2.65 16 13 C -0.11 -1.64 10.05 -39.59 -0.40 -2.04 16 14 C -0.14 -2.13 9.83 -39.54 -0.39 -2.52 16 15 C -0.03 -0.53 6.32 -39.49 -0.25 -0.78 16 16 Cl -0.09 -1.38 28.96 -51.86 -1.50 -2.88 16 17 C -0.10 -1.88 8.69 -39.55 -0.34 -2.23 16 18 C -0.10 -1.94 2.26 -88.66 -0.20 -2.14 16 19 H 0.08 1.43 7.22 -51.93 -0.38 1.06 16 20 C -0.14 -2.48 6.08 -24.48 -0.15 -2.63 16 21 C 0.05 0.74 7.78 38.18 0.30 1.04 16 22 O -0.39 -7.08 11.36 -35.23 -0.40 -7.48 16 23 C 0.05 0.85 6.88 37.88 0.26 1.11 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 25 H 0.12 1.98 7.95 -52.49 -0.42 1.57 16 26 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.13 2.41 7.35 -52.49 -0.39 2.03 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.07 1.39 6.12 -51.93 -0.32 1.07 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.10 7.80 -51.93 -0.40 0.69 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -27.20 292.56 -7.90 -35.10 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.28 Total: 3.64 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.49 Total: -23.64 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.77 Total: -24.60 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.40 Total: -7.48 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.40 Total: 15.46 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.20 -7.90 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.108 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds