Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99804 * 2 1 4 4 H 1.48493 * 109.46989 * 264.91314 * 3 2 1 5 5 H 1.48495 * 109.46959 * 144.90947 * 3 2 1 6 6 H 1.48502 * 109.46946 * 24.91201 * 3 2 1 7 7 C 1.37876 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99600 * 4.45529 * 7 2 1 9 9 C 1.50696 * 119.99922 * 184.46017 * 7 2 1 10 10 H 1.08995 * 109.47402 * 4.52145 * 9 7 2 11 11 C 1.50706 * 109.47458 * 124.52606 * 9 7 2 12 12 C 1.38264 * 119.99038 * 244.76001 * 11 9 7 13 13 C 1.38220 * 120.02493 * 179.97438 * 12 11 9 14 14 C 1.38237 * 120.01313 * 0.02562 * 13 12 11 15 15 C 1.38340 * 119.98601 * 0.02562 * 14 13 12 16 16 Cl 1.73592 * 120.01060 * 180.02562 * 15 14 13 17 17 C 1.38189 * 119.99111 * 64.47335 * 11 9 7 18 18 C 1.53009 * 109.46752 * 244.52009 * 9 7 2 19 19 H 1.09001 * 110.74955 * 299.64722 * 18 9 7 20 20 C 1.55308 * 110.84541 * 63.34742 * 18 9 7 21 21 C 1.54937 * 100.93999 * 152.32255 * 20 18 9 22 22 O 1.43641 * 105.14026 * 323.55114 * 21 20 18 23 23 C 1.43244 * 109.97182 * 24.43175 * 22 21 20 24 24 H 0.96997 * 120.00498 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.98883 * 359.96578 * 12 11 9 26 26 H 1.07992 * 119.99512 * 180.02562 * 13 12 11 27 27 H 1.08003 * 120.00745 * 179.97438 * 14 13 12 28 28 H 1.07998 * 120.01162 * 0.02877 * 17 11 9 29 29 H 1.08997 * 111.12053 * 270.23890 * 20 18 9 30 30 H 1.08994 * 111.12516 * 34.40011 * 20 18 9 31 31 H 1.09005 * 110.30855 * 204.63651 * 21 20 18 32 32 H 1.09004 * 110.39892 * 82.51329 * 21 20 18 33 33 H 1.09000 * 109.82764 * 238.77919 * 23 22 21 34 34 H 1.08996 * 109.90611 * 117.84237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6041 1.9844 -1.3945 5 1 3.4887 1.4737 0.8048 6 1 1.3969 2.6814 0.5898 7 6 2.0046 -1.1940 0.0005 8 1 1.4670 -2.1279 -0.0717 9 6 3.5081 -1.1958 0.1020 10 1 3.8638 -0.1757 0.2466 11 6 3.9317 -2.0461 1.2720 12 6 4.5730 -1.4667 2.3512 13 6 4.9613 -2.2458 3.4248 14 6 4.7092 -3.6049 3.4199 15 6 4.0685 -4.1854 2.3399 16 17 3.7510 -5.8920 2.3333 17 6 3.6738 -3.4037 1.2685 18 6 4.1055 -1.7665 -1.1859 19 1 3.7677 -2.7901 -1.3477 20 6 3.7580 -0.8660 -2.4026 21 6 4.9597 -1.1570 -3.3364 22 8 6.0886 -1.3036 -2.4604 23 6 5.6474 -1.6951 -1.1550 24 1 -0.4851 0.8400 -0.0004 25 1 4.7707 -0.4049 2.3552 26 1 5.4618 -1.7926 4.2676 27 1 5.0130 -4.2137 4.2587 28 1 3.1691 -3.8555 0.4273 29 1 2.8192 -1.1733 -2.8633 30 1 3.7278 0.1855 -2.1172 31 1 5.1176 -0.3233 -4.0207 32 1 4.7924 -2.0778 -3.8953 33 1 5.9688 -0.9576 -0.4196 34 1 6.0579 -2.6726 -0.9022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = -55.829352 kcal Electronic energy + Delta-G solvation = -18243.412986 eV Core-core repulsion = 15358.757251 eV Total energy + Delta-G solvation = -2884.655735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87972 -39.71356 -37.43939 -36.06716 -33.93463 -32.01326 -31.55126 -29.99882 -28.82950 -24.93230 -23.70178 -23.26991 -22.38055 -20.80420 -19.21524 -17.90571 -17.23228 -16.94886 -16.51233 -16.21170 -15.86083 -15.44538 -14.85850 -14.54696 -14.50118 -14.33818 -14.07052 -13.73049 -13.25575 -12.88680 -12.74079 -12.43484 -12.40752 -12.28519 -12.00499 -11.87365 -11.79367 -11.68430 -11.19527 -10.98564 -10.67965 -10.43308 -9.66131 -9.42236 -8.28685 -6.31662 0.34180 0.51870 1.22360 1.32790 1.34269 1.41998 2.31788 2.81046 3.02241 3.10270 3.76477 3.85687 4.02671 4.13141 4.18018 4.27678 4.36406 4.42172 4.56192 4.58141 4.70238 4.80027 4.86755 4.92797 5.06373 5.10527 5.15289 5.28082 5.39827 5.42356 5.53645 5.58115 5.83674 6.01424 6.06437 6.32151 6.73759 7.32247 8.87637 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.008054 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.732128 B = 3475.877664 C = 4253.726980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.024 3.976 3 Si 0.920 3.080 4 H -0.258 1.258 5 H -0.240 1.240 6 H -0.295 1.295 7 C -0.491 4.491 8 H 0.036 0.964 9 C 0.053 3.947 10 H 0.053 0.947 11 C -0.043 4.043 12 C -0.140 4.140 13 C -0.098 4.098 14 C -0.131 4.131 15 C -0.040 4.040 16 Cl -0.079 7.079 17 C -0.118 4.118 18 C -0.103 4.103 19 H 0.071 0.929 20 C -0.141 4.141 21 C 0.052 3.948 22 O -0.405 6.405 23 C 0.058 3.942 24 H 0.265 0.735 25 H 0.128 0.872 26 H 0.161 0.839 27 H 0.152 0.848 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 -3.826 2.565 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.173 4.173 3 Si 0.745 3.255 4 H -0.183 1.183 5 H -0.164 1.164 6 H -0.221 1.221 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.034 3.966 10 H 0.071 0.929 11 C -0.043 4.043 12 C -0.158 4.158 13 C -0.116 4.116 14 C -0.150 4.150 15 C -0.066 4.066 16 Cl -0.051 7.051 17 C -0.136 4.136 18 C -0.122 4.122 19 H 0.090 0.910 20 C -0.179 4.179 21 C -0.024 4.024 22 O -0.325 6.325 23 C -0.019 4.019 24 H 0.074 0.926 25 H 0.145 0.855 26 H 0.178 0.822 27 H 0.170 0.830 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.954 -3.842 2.499 12.803 hybrid contribution -0.887 0.489 -0.065 1.015 sum 11.067 -3.353 2.434 11.818 Atomic orbital electron populations 1.70027 1.08137 1.27909 1.52299 1.25773 0.95173 1.02180 0.94217 0.86204 0.79640 0.79683 0.80002 1.18314 1.16400 1.22147 1.20912 0.89994 0.92991 1.48940 0.94585 1.18349 0.94309 0.94891 0.89021 0.92937 1.20340 0.93488 0.93305 0.97206 1.21385 0.99622 1.00659 0.94117 1.21356 0.98980 0.92742 0.98482 1.21194 1.00383 0.95804 0.97607 1.21048 1.03387 0.84660 0.97552 1.98328 1.94665 1.13458 1.98621 1.20796 1.00911 0.93740 0.98199 1.22782 0.93392 0.99686 0.96322 0.91014 1.23131 0.98957 0.99862 0.95910 1.23505 0.84370 1.01846 0.92706 1.88287 1.32229 1.90261 1.21682 1.23232 0.94132 0.99840 0.84654 0.92594 0.85450 0.82163 0.83010 0.86896 0.90481 0.92179 0.88457 0.91107 0.91502 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 13.96 21.45 0.30 -55.91 16 2 C 0.02 1.32 5.47 84.65 0.46 1.79 16 3 Si 0.92 40.95 25.91 68.60 1.78 42.73 16 4 H -0.26 -10.92 6.80 99.48 0.68 -10.24 16 5 H -0.24 -9.69 6.21 99.48 0.62 -9.08 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 7 C -0.49 -25.52 8.05 25.60 0.21 -25.31 16 8 H 0.04 2.13 8.06 -2.91 -0.02 2.10 16 9 C 0.05 2.23 1.28 -12.28 -0.02 2.21 16 10 H 0.05 2.21 4.19 -2.39 -0.01 2.20 16 11 C -0.04 -1.63 4.24 -19.87 -0.08 -1.71 16 12 C -0.14 -4.57 9.67 22.27 0.22 -4.35 16 13 C -0.10 -2.59 10.05 22.27 0.22 -2.36 16 14 C -0.13 -3.55 9.83 22.29 0.22 -3.33 16 15 C -0.04 -1.28 6.32 22.33 0.14 -1.14 16 16 Cl -0.08 -2.29 28.96 -2.72 -0.08 -2.37 16 17 C -0.12 -4.35 8.69 22.29 0.19 -4.16 16 18 C -0.10 -3.82 2.26 -9.53 -0.02 -3.84 16 19 H 0.07 2.71 7.22 -2.39 -0.02 2.70 16 20 C -0.14 -5.07 6.08 32.05 0.19 -4.87 16 21 C 0.05 1.54 7.78 72.64 0.56 2.10 16 22 O -0.40 -13.56 11.36 -148.98 -1.69 -15.25 16 23 C 0.06 1.91 6.88 72.45 0.50 2.41 16 24 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.13 3.89 7.95 -2.91 -0.02 3.87 16 26 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 28 H 0.11 4.42 7.35 -2.91 -0.02 4.40 16 29 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.06 2.28 6.12 -2.39 -0.01 2.27 16 31 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.07 2.17 7.80 -2.39 -0.02 2.15 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -60.13 292.56 4.08 -56.05 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.98 Total: 17.32 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 2.80 Total: -42.57 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.30 Total: -55.91 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.69 Total: -15.25 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.78 Total: 42.73 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.37 kcal Total: -60.13 4.08 -56.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.220 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds