Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99871 * 2 1 4 4 H 1.48507 * 109.46965 * 240.00026 * 3 2 1 5 5 H 1.48496 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47127 * 120.00223 * 3 2 1 7 7 C 1.37879 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00099 * 175.25707 * 7 2 1 9 9 C 1.50703 * 119.99565 * 355.53301 * 7 2 1 10 10 H 1.08995 * 109.46881 * 29.45147 * 9 7 2 11 11 C 1.50701 * 109.47124 * 269.45078 * 9 7 2 12 12 C 1.38268 * 119.98846 * 299.72775 * 11 9 7 13 13 C 1.38226 * 120.01748 * 179.76901 * 12 11 9 14 14 C 1.38230 * 120.01801 * 0.50618 * 13 12 11 15 15 C 1.38335 * 119.98444 * 359.74703 * 14 13 12 16 16 Cl 1.73597 * 120.01174 * 180.02562 * 15 14 13 17 17 C 1.38190 * 119.99177 * 120.00002 * 11 9 7 18 18 C 1.53002 * 109.46571 * 149.45266 * 9 7 2 19 19 H 1.08997 * 110.75348 * 59.04905 * 18 9 7 20 20 C 1.55309 * 110.84202 * 182.74176 * 18 9 7 21 21 C 1.54948 * 100.94101 * 152.32306 * 20 18 9 22 22 O 1.43647 * 105.13642 * 323.55422 * 21 20 18 23 23 C 1.43244 * 109.97222 * 24.42675 * 22 21 20 24 24 H 0.97002 * 120.00460 * 0.02562 * 1 2 3 25 25 H 1.07991 * 119.99133 * 359.97438 * 12 11 9 26 26 H 1.08002 * 119.98443 * 180.25152 * 13 12 11 27 27 H 1.08004 * 120.01035 * 179.77197 * 14 13 12 28 28 H 1.07989 * 120.00964 * 359.95917 * 17 11 9 29 29 H 1.08992 * 111.12837 * 270.23802 * 20 18 9 30 30 H 1.09004 * 111.12391 * 34.40602 * 20 18 9 31 31 H 1.09002 * 110.30949 * 204.64448 * 21 20 18 32 32 H 1.08996 * 110.31116 * 82.46882 * 21 20 18 33 33 H 1.08999 * 109.83053 * 238.77603 * 23 22 21 34 34 H 1.09001 * 109.90482 * 117.84190 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0768 9 6 1.2545 -2.4971 0.1028 10 1 0.2658 -2.3830 -0.3417 11 6 1.1120 -2.8823 1.5527 12 6 2.2389 -3.0892 2.3268 13 6 2.1090 -3.4379 3.6580 14 6 0.8524 -3.5902 4.2135 15 6 -0.2753 -3.3884 3.4382 16 17 -1.8537 -3.5788 4.1352 17 6 -0.1447 -3.0342 2.1069 18 6 2.0255 -3.5890 -0.6417 19 1 3.0252 -3.7090 -0.2242 20 6 1.2458 -4.9320 -0.6151 21 6 1.7548 -5.5934 -1.9207 22 8 1.9018 -4.5130 -2.8559 23 6 2.0945 -3.2800 -2.1527 24 1 -0.4851 0.8400 -0.0004 25 1 3.2209 -2.9751 1.8920 26 1 2.9896 -3.5953 4.2632 27 1 0.7511 -3.8662 5.2527 28 1 -1.0247 -2.8763 1.5013 29 1 1.5164 -5.5262 0.2575 30 1 0.1698 -4.7623 -0.6544 31 1 1.0255 -6.3153 -2.2883 32 1 2.7156 -6.0787 -1.7492 33 1 1.3088 -2.5741 -2.4220 34 1 3.0695 -2.8601 -2.4001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983892.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = -46.519850 kcal Electronic energy + Delta-G solvation = -18158.298667 eV Core-core repulsion = 15274.046622 eV Total energy + Delta-G solvation = -2884.252045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.24926 -38.21570 -36.01064 -34.30743 -31.98693 -30.28875 -29.95813 -28.87369 -26.31946 -23.61964 -22.01909 -21.66951 -21.07539 -19.25540 -16.65389 -16.52300 -15.64808 -15.38580 -14.79051 -14.53147 -14.40523 -13.95763 -13.25677 -13.03686 -12.79594 -12.59600 -12.44415 -11.68307 -11.51856 -11.17591 -11.06291 -10.89767 -10.84243 -10.80466 -10.60096 -10.49536 -10.22703 -9.98148 -9.43249 -9.28274 -8.88455 -8.61071 -8.14266 -7.82255 -6.19465 -4.24305 1.89517 2.06539 2.66418 3.23783 3.29572 3.31400 4.28825 4.42479 4.50339 5.08584 5.25122 5.39269 5.46538 5.52365 5.57771 5.77269 5.88481 6.02421 6.07020 6.12416 6.21002 6.30233 6.43510 6.45195 6.63266 6.68686 6.73782 6.88046 6.95124 7.16730 7.27556 7.58461 7.60419 7.65205 7.80186 8.14752 8.81718 9.40699 10.88476 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.008872 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.320888 B = 3155.075863 C = 4553.225621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.078 3.922 10 H 0.070 0.930 11 C -0.006 4.006 12 C -0.112 4.112 13 C -0.118 4.118 14 C -0.146 4.146 15 C -0.034 4.034 16 Cl -0.099 7.099 17 C -0.109 4.109 18 C -0.100 4.100 19 H 0.069 0.931 20 C -0.155 4.155 21 C 0.052 3.948 22 O -0.399 6.399 23 C 0.066 3.934 24 H 0.265 0.735 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -8.013 3.761 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.059 3.941 10 H 0.088 0.912 11 C -0.007 4.007 12 C -0.130 4.130 13 C -0.136 4.136 14 C -0.165 4.165 15 C -0.060 4.060 16 Cl -0.070 7.070 17 C -0.128 4.128 18 C -0.119 4.119 19 H 0.087 0.913 20 C -0.192 4.192 21 C -0.024 4.024 22 O -0.319 6.319 23 C -0.010 4.010 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.325 -7.908 3.591 8.785 hybrid contribution 0.308 1.136 0.593 1.318 sum 1.633 -6.771 4.184 8.125 Atomic orbital electron populations 1.69882 1.05971 1.27286 1.48470 1.24970 0.94835 0.99324 0.94127 0.86680 0.79755 0.83025 0.78795 1.20031 1.21204 1.20105 1.20888 0.93133 0.89527 1.51690 0.92307 1.18030 0.98452 0.91607 0.85998 0.91199 1.20714 0.90674 0.89664 0.99601 1.21067 0.99273 0.99463 0.93241 1.20951 0.96023 1.01056 0.95608 1.20700 0.91424 1.05087 0.99256 1.20916 0.84822 1.05873 0.94368 1.98311 1.27541 1.96289 1.84859 1.21018 0.98821 1.00357 0.92593 1.22760 0.99295 0.94334 0.95526 0.91279 1.23354 1.01330 0.97345 0.97195 1.23266 0.99250 0.90401 0.89520 1.88322 1.94085 1.16836 1.32623 1.23098 1.01375 0.85348 0.91132 0.92489 0.86228 0.86523 0.86518 0.85641 0.90933 0.90627 0.90862 0.93180 0.90330 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.66 12.83 55.43 0.71 -22.95 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -12.55 7.43 -34.44 -0.26 -12.81 16 8 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 9 C 0.08 1.70 1.42 -92.92 -0.13 1.56 16 10 H 0.07 1.72 7.08 -51.93 -0.37 1.36 16 11 C -0.01 -0.11 4.21 -104.63 -0.44 -0.55 16 12 C -0.11 -2.09 8.84 -39.57 -0.35 -2.44 16 13 C -0.12 -1.94 10.05 -39.59 -0.40 -2.34 16 14 C -0.15 -2.43 9.83 -39.55 -0.39 -2.82 16 15 C -0.03 -0.61 6.32 -39.50 -0.25 -0.86 16 16 Cl -0.10 -1.62 28.96 -51.86 -1.50 -3.12 16 17 C -0.11 -2.20 9.46 -39.55 -0.37 -2.58 16 18 C -0.10 -1.88 2.29 -88.67 -0.20 -2.08 16 19 H 0.07 1.26 7.49 -51.93 -0.39 0.87 16 20 C -0.15 -2.52 6.06 -24.48 -0.15 -2.67 16 21 C 0.05 0.80 7.78 38.19 0.30 1.10 16 22 O -0.40 -7.43 11.36 -35.23 -0.40 -7.83 16 23 C 0.07 1.28 6.89 37.88 0.26 1.54 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.12 2.13 7.62 -52.49 -0.40 1.74 16 26 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 28 H 0.13 2.63 7.94 -52.49 -0.42 2.21 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.28 8.04 -51.93 -0.42 0.87 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.66 7.79 -51.93 -0.40 1.25 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -26.03 300.82 -8.64 -34.67 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.48 Total: 2.69 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.48 Total: -23.21 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.71 Total: -22.95 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.40 Total: -7.83 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.50 Total: -3.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.03 -8.64 -34.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983892.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.850 kcal (2) G-P(sol) polarization free energy of solvation -26.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds