Wall clock time and date at job start Mon Mar 30 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99871 * 2 1 4 4 H 1.48507 * 109.46965 * 240.00026 * 3 2 1 5 5 H 1.48496 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47127 * 120.00223 * 3 2 1 7 7 C 1.37879 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00099 * 175.25707 * 7 2 1 9 9 C 1.50703 * 119.99565 * 355.53301 * 7 2 1 10 10 H 1.08995 * 109.46881 * 29.45147 * 9 7 2 11 11 C 1.50701 * 109.47124 * 269.45078 * 9 7 2 12 12 C 1.38268 * 119.98846 * 299.72775 * 11 9 7 13 13 C 1.38226 * 120.01748 * 179.76901 * 12 11 9 14 14 C 1.38230 * 120.01801 * 0.50618 * 13 12 11 15 15 C 1.38335 * 119.98444 * 359.74703 * 14 13 12 16 16 Cl 1.73597 * 120.01174 * 180.02562 * 15 14 13 17 17 C 1.38190 * 119.99177 * 120.00002 * 11 9 7 18 18 C 1.53002 * 109.46571 * 149.45266 * 9 7 2 19 19 H 1.08997 * 110.75348 * 59.04905 * 18 9 7 20 20 C 1.55309 * 110.84202 * 182.74176 * 18 9 7 21 21 C 1.54948 * 100.94101 * 152.32306 * 20 18 9 22 22 O 1.43647 * 105.13642 * 323.55422 * 21 20 18 23 23 C 1.43244 * 109.97222 * 24.42675 * 22 21 20 24 24 H 0.97002 * 120.00460 * 0.02562 * 1 2 3 25 25 H 1.07991 * 119.99133 * 359.97438 * 12 11 9 26 26 H 1.08002 * 119.98443 * 180.25152 * 13 12 11 27 27 H 1.08004 * 120.01035 * 179.77197 * 14 13 12 28 28 H 1.07989 * 120.00964 * 359.95917 * 17 11 9 29 29 H 1.08992 * 111.12837 * 270.23802 * 20 18 9 30 30 H 1.09004 * 111.12391 * 34.40602 * 20 18 9 31 31 H 1.09002 * 110.30949 * 204.64448 * 21 20 18 32 32 H 1.08996 * 110.31116 * 82.46882 * 21 20 18 33 33 H 1.08999 * 109.83053 * 238.77603 * 23 22 21 34 34 H 1.09001 * 109.90482 * 117.84190 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0768 9 6 1.2545 -2.4971 0.1028 10 1 0.2658 -2.3830 -0.3417 11 6 1.1120 -2.8823 1.5527 12 6 2.2389 -3.0892 2.3268 13 6 2.1090 -3.4379 3.6580 14 6 0.8524 -3.5902 4.2135 15 6 -0.2753 -3.3884 3.4382 16 17 -1.8537 -3.5788 4.1352 17 6 -0.1447 -3.0342 2.1069 18 6 2.0255 -3.5890 -0.6417 19 1 3.0252 -3.7090 -0.2242 20 6 1.2458 -4.9320 -0.6151 21 6 1.7548 -5.5934 -1.9207 22 8 1.9018 -4.5130 -2.8559 23 6 2.0945 -3.2800 -2.1527 24 1 -0.4851 0.8400 -0.0004 25 1 3.2209 -2.9751 1.8920 26 1 2.9896 -3.5953 4.2632 27 1 0.7511 -3.8662 5.2527 28 1 -1.0247 -2.8763 1.5013 29 1 1.5164 -5.5262 0.2575 30 1 0.1698 -4.7623 -0.6544 31 1 1.0255 -6.3153 -2.2883 32 1 2.7156 -6.0787 -1.7492 33 1 1.3088 -2.5741 -2.4220 34 1 3.0695 -2.8601 -2.4001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983892.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:04 Heat of formation + Delta-G solvation = -58.829517 kcal Electronic energy + Delta-G solvation = -18158.832454 eV Core-core repulsion = 15274.046622 eV Total energy + Delta-G solvation = -2884.785832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72111 -39.63372 -37.39180 -35.93693 -33.76542 -31.72152 -31.38546 -30.31325 -28.03506 -25.32953 -23.44895 -23.03461 -22.53741 -20.81760 -18.48654 -17.93491 -17.08550 -16.91345 -16.40414 -16.08000 -15.89862 -15.40023 -14.73874 -14.53024 -14.20057 -14.16004 -13.89166 -13.40455 -13.11768 -12.86400 -12.61081 -12.34304 -12.31199 -12.27420 -12.22012 -11.90054 -11.72149 -11.51656 -11.09562 -10.96647 -10.54117 -10.35297 -9.57842 -9.29459 -8.12962 -6.21708 0.45703 0.64593 1.27695 1.42419 1.43554 1.49216 2.42051 2.95611 3.10615 3.21677 3.80062 4.00729 4.14926 4.16149 4.24807 4.43191 4.45225 4.57345 4.66271 4.75194 4.87687 4.89109 5.01101 5.02380 5.14574 5.17077 5.31831 5.34015 5.50382 5.63440 5.70328 5.76404 6.02652 6.15111 6.19642 6.34514 6.91336 7.45077 8.94000 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.008872 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.320888 B = 3155.075863 C = 4553.225621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.083 3.917 10 H 0.029 0.971 11 C -0.024 4.024 12 C -0.121 4.121 13 C -0.106 4.106 14 C -0.139 4.139 15 C -0.041 4.041 16 Cl -0.085 7.085 17 C -0.129 4.129 18 C -0.097 4.097 19 H 0.081 0.919 20 C -0.146 4.146 21 C 0.050 3.950 22 O -0.413 6.413 23 C 0.071 3.929 24 H 0.260 0.740 25 H 0.127 0.873 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -9.385 5.420 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.064 3.936 10 H 0.047 0.953 11 C -0.025 4.025 12 C -0.140 4.140 13 C -0.124 4.124 14 C -0.157 4.157 15 C -0.068 4.068 16 Cl -0.057 7.057 17 C -0.148 4.148 18 C -0.116 4.116 19 H 0.099 0.901 20 C -0.184 4.184 21 C -0.026 4.026 22 O -0.334 6.334 23 C -0.005 4.005 24 H 0.069 0.931 25 H 0.145 0.855 26 H 0.174 0.826 27 H 0.166 0.834 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.102 -9.294 5.248 11.115 hybrid contribution -0.268 1.468 0.117 1.497 sum 2.834 -7.826 5.365 9.902 Atomic orbital electron populations 1.70026 1.07233 1.27289 1.50796 1.25627 0.95376 1.02124 0.94627 0.85870 0.78586 0.79872 0.78963 1.19386 1.21828 1.19633 1.21222 0.93291 0.90634 1.49905 0.92085 1.17817 0.96335 0.91901 0.87533 0.95296 1.20521 0.91679 0.91526 0.98753 1.21207 0.98692 0.99764 0.94291 1.21354 0.97394 0.98795 0.94822 1.21102 0.90764 1.03428 1.00448 1.21032 0.86235 1.05655 0.93839 1.98311 1.26797 1.96178 1.84388 1.20892 0.98071 1.02172 0.93680 1.22661 0.99688 0.94656 0.94572 0.90081 1.23268 1.00100 0.96271 0.98730 1.23507 1.01141 0.89691 0.88213 1.88299 1.94196 1.17180 1.33678 1.22925 1.00372 0.85475 0.91701 0.93127 0.85517 0.82558 0.83436 0.88044 0.89104 0.92181 0.88714 0.90779 0.93425 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.37 12.83 21.45 0.28 -51.09 16 2 C 0.02 1.18 5.46 84.66 0.46 1.64 16 3 Si 0.94 42.00 29.54 68.60 2.03 44.03 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.51 -25.38 7.43 25.60 0.19 -25.19 16 8 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 9 C 0.08 3.72 1.42 -12.28 -0.02 3.70 16 10 H 0.03 1.52 7.08 -2.39 -0.02 1.50 16 11 C -0.02 -0.98 4.21 -19.87 -0.08 -1.06 16 12 C -0.12 -4.27 8.84 22.27 0.20 -4.07 16 13 C -0.11 -3.08 10.05 22.27 0.22 -2.86 16 14 C -0.14 -4.16 9.83 22.29 0.22 -3.94 16 15 C -0.04 -1.45 6.32 22.33 0.14 -1.31 16 16 Cl -0.09 -2.70 28.96 -2.72 -0.08 -2.78 16 17 C -0.13 -5.30 9.46 22.29 0.21 -5.09 16 18 C -0.10 -3.62 2.29 -9.53 -0.02 -3.64 16 19 H 0.08 2.82 7.49 -2.39 -0.02 2.81 16 20 C -0.15 -4.64 6.06 32.05 0.19 -4.45 16 21 C 0.05 1.44 7.78 72.65 0.56 2.01 16 22 O -0.41 -15.13 11.36 -148.98 -1.69 -16.82 16 23 C 0.07 2.79 6.89 72.45 0.50 3.29 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.13 4.21 7.62 -2.92 -0.02 4.19 16 26 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.10 4.54 7.94 -2.92 -0.02 4.52 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.08 8.04 -2.39 -0.02 2.06 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 2.13 7.79 -2.39 -0.02 2.11 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -57.18 300.82 4.40 -52.78 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.08 Total: 14.85 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 2.78 Total: -40.97 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.28 Total: -51.09 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.69 Total: -16.82 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.08 Total: -2.78 kcal Total: -57.18 4.40 -52.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983892.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.047 kcal (2) G-P(sol) polarization free energy of solvation -57.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds