Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.38069 * 120.05299 * 100.00267 * 11 10 9 13 13 C 1.38501 * 120.31524 * 180.02562 * 12 11 10 14 14 C 1.38312 * 119.93282 * 0.02562 * 13 12 11 15 15 C 1.38457 * 119.89928 * 359.97212 * 14 13 12 16 16 Cl 1.73606 * 119.92187 * 180.02562 * 15 14 13 17 17 C 1.38663 * 120.05118 * 279.72797 * 11 10 9 18 18 O 1.35925 * 120.09428 * 359.97438 * 17 11 10 19 19 C 1.51377 * 109.74743 * 179.97438 * 14 13 12 20 20 C 1.54335 * 105.17328 * 17.20786 * 19 14 13 21 21 C 1.51380 * 130.33540 * 180.02562 * 13 12 11 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08007 * 119.84917 * 359.97438 * 12 11 10 28 28 H 0.96701 * 114.00212 * 90.00713 * 18 17 11 29 29 H 1.09003 * 110.30124 * 136.13315 * 19 14 13 30 30 H 1.09001 * 110.29988 * 258.27623 * 19 14 13 31 31 H 1.08997 * 110.82419 * 91.84552 * 20 19 14 32 32 H 1.09008 * 110.81772 * 215.19795 * 20 19 14 33 33 H 1.09006 * 110.29761 * 281.72150 * 21 13 12 34 34 H 1.09002 * 110.30425 * 43.86932 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 6 6.2199 -2.8441 1.1760 13 6 7.6049 -2.8447 1.1824 14 6 8.3006 -2.6361 0.0053 15 6 7.6103 -2.4278 -1.1767 16 17 8.4829 -2.1665 -2.6546 17 6 6.2229 -2.4339 -1.1839 18 8 5.5463 -2.2353 -2.3460 19 6 9.7892 -2.6828 0.2759 20 6 9.9287 -3.3729 1.6492 21 6 8.5794 -3.0462 2.3232 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8908 27 1 5.6782 -3.0059 2.0963 28 1 5.3503 -1.3071 -2.5333 29 1 10.2954 -3.2658 -0.4936 30 1 10.1980 -1.6731 0.3165 31 1 10.0518 -4.4495 1.5312 32 1 10.7598 -2.9491 2.2132 33 1 8.6635 -2.1342 2.9142 34 1 8.2592 -3.8771 2.9519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260021659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -48.608551 kcal Electronic energy + Delta-G solvation = -17657.078192 eV Core-core repulsion = 14772.735574 eV Total energy + Delta-G solvation = -2884.342618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37744 -37.83637 -36.41559 -35.12047 -33.43985 -31.77783 -30.54275 -28.31275 -27.15652 -24.88668 -22.56383 -21.21167 -20.94184 -19.87828 -17.62773 -16.86110 -16.51961 -15.79386 -15.40342 -15.00768 -14.27361 -13.83850 -13.37324 -13.04627 -13.01335 -12.75465 -12.57383 -12.30333 -11.81216 -11.74812 -11.61940 -11.45694 -11.35292 -11.01703 -10.85403 -10.73264 -10.34591 -10.08005 -9.90451 -9.72061 -9.23658 -8.57684 -8.42079 -8.11391 -6.07803 -4.06328 1.21465 1.31716 2.23911 3.26706 3.35103 3.37878 3.56980 4.13765 4.41167 4.41411 4.58836 4.83543 5.01347 5.15236 5.25760 5.26076 5.41184 5.55000 5.59320 5.65989 5.73463 5.86271 5.99184 6.01436 6.11788 6.20761 6.42483 6.50888 6.65707 6.71845 6.88884 7.20359 7.35624 7.73299 7.86218 8.49464 8.97147 9.54099 11.05607 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.005523 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.556595 B = 5068.727982 C = 5611.051398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.002 4.002 10 C -0.066 4.066 11 C -0.074 4.074 12 C -0.091 4.091 13 C -0.095 4.095 14 C -0.097 4.097 15 C -0.048 4.048 16 Cl -0.072 7.072 17 C 0.116 3.884 18 O -0.481 6.481 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.079 4.079 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.008 0.992 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.393 0.607 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.502 -4.840 1.742 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.039 4.039 10 C -0.104 4.104 11 C -0.074 4.074 12 C -0.109 4.109 13 C -0.096 4.096 14 C -0.097 4.097 15 C -0.075 4.075 16 Cl -0.043 7.043 17 C 0.070 3.930 18 O -0.291 6.291 19 C -0.113 4.113 20 C -0.157 4.157 21 C -0.116 4.116 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.250 0.750 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.448 -5.303 1.552 21.182 hybrid contribution 0.273 1.552 -0.242 1.595 sum 20.721 -3.751 1.311 21.099 Atomic orbital electron populations 1.69908 1.06276 1.26910 1.50956 1.25006 0.94698 0.99057 0.94539 0.86826 0.80403 0.83800 0.78563 1.20223 1.21298 1.19072 1.21102 0.89182 0.94582 1.50961 0.90842 1.19490 0.97164 0.91149 0.96126 1.20573 0.86287 1.00722 1.02774 1.20581 0.98453 0.97425 0.90973 1.20593 0.92306 0.99951 0.98084 1.20497 0.93464 1.00717 0.94899 1.20126 0.96508 1.01678 0.91434 1.20923 0.91289 1.08218 0.87062 1.98333 1.76145 1.95013 1.34803 1.17882 0.87169 1.01522 0.86440 1.84783 1.75831 1.31847 1.36651 1.20989 0.91170 1.01482 0.97655 1.22287 0.97095 1.00916 0.95355 1.21017 0.92667 1.02220 0.95647 0.92678 0.96578 0.97371 0.91347 0.90589 0.85170 0.75022 0.90613 0.90126 0.90907 0.90483 0.90062 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.05 4.02 -27.88 -0.11 -0.16 16 10 C -0.07 -1.31 4.95 -27.88 -0.14 -1.45 16 11 C -0.07 -1.28 5.14 -104.53 -0.54 -1.81 16 12 C -0.09 -1.38 9.66 -39.55 -0.38 -1.77 16 13 C -0.10 -1.28 6.14 -104.16 -0.64 -1.92 16 14 C -0.10 -1.32 6.05 -104.18 -0.63 -1.95 16 15 C -0.05 -0.73 6.33 -39.31 -0.25 -0.98 16 16 Cl -0.07 -0.99 28.25 -51.86 -1.47 -2.46 16 17 C 0.12 1.96 6.67 -39.24 -0.26 1.69 16 18 O -0.48 -8.06 12.15 -19.50 -0.24 -8.30 16 19 C -0.08 -0.78 6.47 -26.85 -0.17 -0.95 16 20 C -0.12 -1.00 7.08 -25.34 -0.18 -1.18 16 21 C -0.08 -0.77 6.77 -26.85 -0.18 -0.95 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 24 H 0.01 0.18 7.13 -51.93 -0.37 -0.19 16 25 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 26 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 27 H 0.13 1.78 8.03 -52.48 -0.42 1.36 16 28 H 0.39 5.52 8.67 45.56 0.40 5.92 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -31.14 299.02 -8.72 -39.86 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.72 Total: 0.90 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -3.91 Total: -24.46 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.77 Total: -26.82 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.24 Total: -8.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.47 Total: -2.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.14 -8.72 -39.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.745 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds