Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.38069 * 120.05299 * 100.00267 * 11 10 9 13 13 C 1.38501 * 120.31524 * 180.02562 * 12 11 10 14 14 C 1.38312 * 119.93282 * 0.02562 * 13 12 11 15 15 C 1.38457 * 119.89928 * 359.97212 * 14 13 12 16 16 Cl 1.73606 * 119.92187 * 180.02562 * 15 14 13 17 17 C 1.38663 * 120.05118 * 279.72797 * 11 10 9 18 18 O 1.35925 * 120.09428 * 359.97438 * 17 11 10 19 19 C 1.51377 * 109.74743 * 179.97438 * 14 13 12 20 20 C 1.54335 * 105.17328 * 17.20786 * 19 14 13 21 21 C 1.51380 * 130.33540 * 180.02562 * 13 12 11 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.08007 * 119.84917 * 359.97438 * 12 11 10 28 28 H 0.96701 * 114.00212 * 90.00713 * 18 17 11 29 29 H 1.09003 * 110.30124 * 136.13315 * 19 14 13 30 30 H 1.09001 * 110.29988 * 258.27623 * 19 14 13 31 31 H 1.08997 * 110.82419 * 91.84552 * 20 19 14 32 32 H 1.09008 * 110.81772 * 215.19795 * 20 19 14 33 33 H 1.09006 * 110.29761 * 281.72150 * 21 13 12 34 34 H 1.09002 * 110.30425 * 43.86932 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 6 6.2199 -2.8441 1.1760 13 6 7.6049 -2.8447 1.1824 14 6 8.3006 -2.6361 0.0053 15 6 7.6103 -2.4278 -1.1767 16 17 8.4829 -2.1665 -2.6546 17 6 6.2229 -2.4339 -1.1839 18 8 5.5463 -2.2353 -2.3460 19 6 9.7892 -2.6828 0.2759 20 6 9.9287 -3.3729 1.6492 21 6 8.5794 -3.0462 2.3232 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8908 27 1 5.6782 -3.0059 2.0963 28 1 5.3503 -1.3071 -2.5333 29 1 10.2954 -3.2658 -0.4936 30 1 10.1980 -1.6731 0.3165 31 1 10.0518 -4.4495 1.5312 32 1 10.7598 -2.9491 2.2132 33 1 8.6635 -2.1342 2.9142 34 1 8.2592 -3.8771 2.9519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -67.153035 kcal Electronic energy + Delta-G solvation = -17657.882341 eV Core-core repulsion = 14772.735574 eV Total energy + Delta-G solvation = -2885.146767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47750 -38.93832 -37.54130 -36.46406 -35.16808 -33.45693 -31.75422 -29.69340 -28.15816 -26.47411 -23.72924 -22.87972 -21.82361 -21.18433 -19.01156 -18.79329 -17.66079 -16.76173 -16.51878 -16.25410 -16.12204 -15.06574 -14.87291 -14.67994 -14.35075 -13.93094 -13.79270 -13.37933 -13.26663 -12.92299 -12.88270 -12.73474 -12.50561 -12.15622 -11.97707 -11.95510 -11.83809 -11.65012 -11.52177 -11.33337 -11.20349 -10.77550 -9.57436 -9.27553 -8.30188 -6.34603 0.06910 0.15549 1.11603 1.34225 1.36229 1.47779 2.34507 2.42560 3.04370 3.07494 3.50398 3.59427 3.99757 4.13935 4.17196 4.23100 4.31657 4.56503 4.62755 4.67876 4.85042 4.88168 4.91441 4.96992 5.03619 5.13188 5.22625 5.26592 5.37653 5.40313 5.45096 5.61453 5.63061 5.75265 6.26776 6.67951 6.72811 7.29827 8.86765 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.005523 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.556595 B = 5068.727982 C = 5611.051398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.032 0.968 9 C 0.005 3.995 10 C -0.054 4.054 11 C -0.098 4.098 12 C -0.096 4.096 13 C -0.095 4.095 14 C -0.096 4.096 15 C -0.060 4.060 16 Cl -0.062 7.062 17 C 0.099 3.901 18 O -0.494 6.494 19 C -0.078 4.078 20 C -0.111 4.111 21 C -0.079 4.079 22 H 0.267 0.733 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.400 0.600 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.010 -4.119 2.727 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.051 0.949 9 C -0.032 4.032 10 C -0.091 4.091 11 C -0.098 4.098 12 C -0.115 4.115 13 C -0.095 4.095 14 C -0.097 4.097 15 C -0.087 4.087 16 Cl -0.033 7.033 17 C 0.054 3.946 18 O -0.306 6.306 19 C -0.115 4.115 20 C -0.148 4.148 21 C -0.115 4.115 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.258 0.742 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 23.974 -4.598 2.534 24.543 hybrid contribution -0.810 1.232 -0.557 1.576 sum 23.164 -3.366 1.977 23.491 Atomic orbital electron populations 1.70065 1.08308 1.28179 1.52567 1.25973 0.95549 1.03370 0.94064 0.85693 0.79456 0.78392 0.79338 1.18928 1.20910 1.17209 1.21441 0.91851 0.93174 1.50464 0.94929 1.19370 0.93793 0.93683 0.96362 1.20266 0.88676 0.98299 1.01867 1.20331 0.96667 1.00429 0.92411 1.20754 0.93488 0.99611 0.97599 1.20947 0.93078 0.99064 0.96460 1.20659 0.98632 0.99611 0.90750 1.21017 0.90900 1.08575 0.88206 1.98330 1.75670 1.94968 1.34369 1.18018 0.88038 1.02426 0.86141 1.84753 1.76152 1.32727 1.36952 1.21145 0.88585 1.02618 0.99111 1.22326 0.97071 1.01376 0.94037 1.21161 0.92261 1.03446 0.94658 0.92449 0.96325 0.96453 0.91510 0.92342 0.84176 0.74174 0.90021 0.88932 0.90248 0.87836 0.88739 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.53 -30.76 9.66 25.60 0.25 -30.51 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.01 0.25 4.02 29.85 0.12 0.37 16 10 C -0.05 -2.18 4.95 29.85 0.15 -2.03 16 11 C -0.10 -3.37 5.14 -19.80 -0.10 -3.47 16 12 C -0.10 -2.80 9.66 22.29 0.22 -2.58 16 13 C -0.10 -2.30 6.14 -19.57 -0.12 -2.42 16 14 C -0.10 -2.36 6.05 -19.58 -0.12 -2.48 16 15 C -0.06 -1.74 6.33 22.44 0.14 -1.60 16 16 Cl -0.06 -1.63 28.25 -2.72 -0.08 -1.70 16 17 C 0.10 3.32 6.67 22.49 0.15 3.47 16 18 O -0.49 -16.70 12.15 -92.70 -1.13 -17.82 16 19 C -0.08 -1.31 6.47 30.52 0.20 -1.11 16 20 C -0.11 -1.35 7.08 31.50 0.22 -1.13 16 21 C -0.08 -1.22 6.77 30.51 0.21 -1.01 16 22 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 23 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 24 H 0.02 0.77 7.13 -2.39 -0.02 0.76 16 25 H 0.07 2.64 8.00 -2.39 -0.02 2.62 16 26 H 0.06 2.51 7.85 -2.39 -0.02 2.50 16 27 H 0.14 3.65 8.03 -2.91 -0.02 3.63 16 28 H 0.40 11.33 8.67 -74.06 -0.64 10.69 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.57 299.02 3.17 -65.40 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.42 Total: 11.34 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 1.77 Total: -43.61 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.30 Total: -59.54 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.13 Total: -17.82 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.70 kcal Total: -68.57 3.17 -65.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.752 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds