Wall clock time and date at job start Mon Mar 30 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48504 * 109.46938 * 239.99827 * 3 2 1 5 5 H 1.48492 * 109.47256 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47231 * 120.00142 * 3 2 1 7 7 C 1.37882 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99543 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00336 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47650 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47647 * 179.97438 * 10 9 7 12 12 C 1.38291 * 119.91659 * 269.97663 * 11 10 9 13 13 C 1.38129 * 120.11659 * 180.02562 * 12 11 10 14 14 C 1.38897 * 119.94617 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.08718 * 179.97438 * 14 13 12 16 16 C 1.81396 * 103.00012 * 0.02562 * 15 14 13 17 17 C 1.53003 * 117.49909 * 243.74855 * 16 15 14 18 18 C 1.53004 * 117.49807 * 175.08818 * 16 15 14 19 19 C 1.39135 * 119.82849 * 359.97438 * 14 13 12 20 20 F 1.35100 * 120.06104 * 179.97438 * 19 14 13 21 21 C 1.38265 * 119.88440 * 0.02562 * 19 14 13 22 22 H 0.97008 * 119.99777 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47215 * 59.99516 * 9 7 2 24 24 H 1.09006 * 109.46882 * 299.99909 * 9 7 2 25 25 H 1.09002 * 109.46826 * 59.99744 * 10 9 7 26 26 H 1.08998 * 109.47435 * 300.00399 * 10 9 7 27 27 H 1.07993 * 119.93799 * 0.02817 * 12 11 10 28 28 H 1.08005 * 120.03136 * 180.02562 * 13 12 11 29 29 H 1.08999 * 115.54886 * 29.41687 * 16 15 14 30 30 H 1.09005 * 117.49777 * 0.02562 * 17 16 15 31 31 H 1.08994 * 117.50022 * 145.02027 * 17 16 15 32 32 H 1.09000 * 117.49634 * 214.97153 * 18 16 15 33 33 H 1.08996 * 117.50089 * 0.02562 * 18 16 15 34 34 H 1.08002 * 119.97507 * 179.72584 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4915 -4.9672 0.0012 12 6 1.1475 -5.5644 1.2001 13 6 0.4573 -6.7608 1.2055 14 6 0.1086 -7.3656 0.0047 15 16 -0.7713 -8.8921 0.0072 16 6 -0.9743 -9.2432 1.7753 17 6 -0.2909 -10.4946 2.3301 18 6 -1.8121 -10.4638 2.1616 19 6 0.4559 -6.7627 -1.2002 20 9 0.1195 -7.3471 -2.3710 21 6 1.1468 -5.5651 -1.1974 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8717 -3.6044 0.8905 26 1 2.8717 -3.6045 -0.8894 27 1 1.4189 -5.0944 2.1337 28 1 0.1889 -7.2258 2.1427 29 1 -1.0285 -8.3695 2.4248 30 1 0.2811 -11.1068 1.6327 31 1 0.1041 -10.4444 3.3447 32 1 -2.4170 -10.3933 3.0655 33 1 -2.2409 -11.0561 1.3533 34 1 1.4209 -5.0981 -2.1319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260025357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:12 Heat of formation + Delta-G solvation = -23.476227 kcal Electronic energy + Delta-G solvation = -16762.370086 eV Core-core repulsion = 13893.533783 eV Total energy + Delta-G solvation = -2868.836303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01499 -40.18567 -37.71863 -35.97180 -34.03965 -31.75405 -30.75355 -27.15289 -24.73077 -24.07259 -23.34439 -22.94899 -21.94718 -18.82670 -18.50051 -18.02763 -17.46372 -17.34063 -16.78110 -16.51102 -15.75606 -15.47956 -14.87275 -14.70521 -14.51981 -14.05271 -13.86992 -13.71062 -13.18783 -12.96893 -12.77687 -12.66732 -12.47509 -12.24747 -12.08175 -11.74999 -11.63091 -11.52083 -11.26996 -11.20686 -10.55040 -10.43894 -9.90618 -8.37258 -8.18482 -6.31282 -0.02158 0.12453 0.39428 1.31919 1.41753 1.44472 1.52373 2.39716 2.47365 2.68605 3.08929 3.14062 3.61272 3.69323 3.86842 3.91774 3.93788 4.18763 4.26334 4.51504 4.59098 4.71620 4.76065 4.83280 4.84880 4.98731 5.01559 5.06458 5.16712 5.17742 5.42915 5.50012 5.77484 5.77671 5.84241 6.22067 6.85694 7.38348 8.92003 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.003659 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.817561 B = 7650.677988 C = 8007.185321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.066 4.066 11 C -0.050 4.050 12 C -0.110 4.110 13 C -0.096 4.096 14 C -0.144 4.144 15 S -0.080 6.080 16 C -0.183 4.183 17 C -0.147 4.147 18 C -0.132 4.132 19 C 0.096 3.904 20 F -0.140 7.140 21 C -0.145 4.145 22 H 0.263 0.737 23 H -0.013 1.013 24 H -0.005 1.005 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -20.433 5.617 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.002 4.002 10 C -0.103 4.103 11 C -0.052 4.052 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.257 4.257 15 S 0.166 5.834 16 C -0.312 4.312 17 C -0.187 4.187 18 C -0.171 4.171 19 C 0.071 3.929 20 F -0.119 7.119 21 C -0.165 4.165 22 H 0.072 0.928 23 H 0.006 0.994 24 H 0.013 0.987 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.178 0.822 29 H 0.151 0.849 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.778 -21.090 4.648 21.610 hybrid contribution 0.441 1.956 0.374 2.040 sum -0.337 -19.134 5.022 19.785 Atomic orbital electron populations 1.70106 1.07900 1.27835 1.51552 1.25989 0.95712 1.03408 0.94704 0.85499 0.78237 0.78029 0.79284 1.19216 1.21115 1.18884 1.21680 0.93764 0.92053 1.50696 0.91608 1.18933 0.94027 0.92258 0.94995 1.20622 0.97323 0.89712 1.02679 1.20155 0.96745 0.95777 0.92566 1.21303 0.98257 0.94975 0.98461 1.21281 0.98342 0.95725 0.96514 1.21859 1.06941 1.01641 0.95245 1.85193 1.68235 1.20596 1.09347 1.24552 1.14086 0.98043 0.94531 1.23405 0.95433 0.96436 1.03428 1.23128 0.94606 0.95531 1.03857 1.17210 1.01703 0.93833 0.80176 1.91459 1.90678 1.83752 1.46002 1.21081 1.00872 0.94324 1.00218 0.92811 0.99420 0.98662 0.90380 0.91374 0.83399 0.82217 0.84897 0.87852 0.85949 0.85408 0.87993 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.04 1.82 4.95 29.84 0.15 1.97 16 10 C -0.07 -2.63 5.28 29.84 0.16 -2.47 16 11 C -0.05 -1.77 5.14 -19.84 -0.10 -1.88 16 12 C -0.11 -3.36 9.69 22.26 0.22 -3.14 16 13 C -0.10 -2.59 9.33 22.40 0.21 -2.38 16 14 C -0.14 -4.34 6.11 22.64 0.14 -4.20 16 15 S -0.08 -2.02 21.74 -56.49 -1.23 -3.25 16 16 C -0.18 -3.16 5.49 30.60 0.17 -3.00 16 17 C -0.15 -1.82 10.30 30.62 0.32 -1.50 16 18 C -0.13 -1.60 10.30 30.62 0.32 -1.28 16 19 C 0.10 3.25 7.28 22.49 0.16 3.41 16 20 F -0.14 -4.82 16.76 44.97 0.75 -4.07 16 21 C -0.14 -5.10 9.67 22.29 0.22 -4.88 16 22 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 23 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 25 H 0.08 2.87 8.08 -2.39 -0.02 2.85 16 26 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 27 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 28 H 0.16 3.25 5.42 -2.91 -0.02 3.23 16 29 H 0.13 2.15 6.14 -2.39 -0.01 2.13 16 30 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -65.60 309.50 5.57 -60.03 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.10 Total: 7.17 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 2.64 Total: -49.05 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.75 Total: -4.07 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -1.23 Total: -3.25 kcal Total: -65.60 5.57 -60.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.552 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds