Wall clock time and date at job start Mon Mar 30 2020 08:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00098 * 2 1 4 4 H 1.48501 * 109.47542 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47368 * 300.00196 * 3 2 1 6 6 H 1.48500 * 109.47233 * 60.00246 * 3 2 1 7 7 C 1.37883 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99682 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.45291 * 60.02846 * 9 7 2 11 11 C 1.53041 * 109.45918 * 180.02562 * 9 7 2 12 12 C 1.53124 * 109.27765 * 60.83699 * 11 9 7 13 13 H 1.09000 * 109.52342 * 297.68639 * 12 11 9 14 14 C 1.50702 * 109.52055 * 177.55951 * 12 11 9 15 15 C 1.38234 * 119.59999 * 274.99755 * 14 12 11 16 16 C 1.38608 * 119.17365 * 179.97438 * 15 14 12 17 17 C 1.38790 * 118.40887 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.42962 * 179.97438 * 17 16 15 19 19 C 1.38308 * 119.13468 * 0.27966 * 17 16 15 20 20 N 1.31841 * 119.60289 * 94.98118 * 14 12 11 21 21 C 1.53122 * 109.15959 * 57.65306 * 12 11 9 22 22 C 1.53032 * 109.27904 * 302.34645 * 21 12 11 23 23 N 1.46844 * 109.46145 * 300.05217 * 9 7 2 24 24 H 0.97001 * 119.99530 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50247 * 300.89610 * 11 9 7 26 26 H 1.08999 * 109.49878 * 180.77849 * 11 9 7 27 27 H 1.07997 * 120.41289 * 359.95989 * 15 14 12 28 28 H 1.07994 * 120.79731 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.62403 * 179.72664 * 19 17 16 30 30 H 1.08997 * 109.50289 * 62.28504 * 21 12 11 31 31 H 1.08998 * 109.50100 * 182.40123 * 21 12 11 32 32 H 1.09002 * 109.46520 * 299.16372 * 22 21 12 33 33 H 1.09003 * 109.46203 * 179.19608 * 22 21 12 34 34 H 1.00899 * 111.00158 * 65.83197 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6245 -2.5566 -0.8907 11 6 2.2457 -3.6623 -0.0005 12 6 3.1096 -3.5887 1.2616 13 1 3.6843 -2.6625 1.2562 14 6 4.0506 -4.7652 1.2971 15 6 3.6185 -5.9697 1.8200 16 6 4.4913 -7.0461 1.8478 17 6 5.7733 -6.8699 1.3462 18 17 6.9093 -8.1826 1.3557 19 6 6.1360 -5.6331 0.8445 20 7 5.2759 -4.6335 0.8286 21 6 2.2020 -3.6220 2.4944 22 6 1.2086 -2.4601 2.4221 23 7 0.4064 -2.5764 1.1982 24 1 -0.4849 0.8401 0.0004 25 1 2.8832 -3.5959 -0.8822 26 1 1.7014 -4.6065 -0.0145 27 1 2.6136 -6.0706 2.2025 28 1 4.1814 -7.9989 2.2508 29 1 7.1330 -5.4860 0.4563 30 1 1.6570 -4.5656 2.5197 31 1 2.8082 -3.5270 3.3953 32 1 1.7538 -1.5163 2.4107 33 1 0.5516 -2.4894 3.2913 34 1 -0.3198 -1.8763 1.1746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:17 Heat of formation + Delta-G solvation = 15.590082 kcal Electronic energy + Delta-G solvation = -17965.723524 eV Core-core repulsion = 15116.457518 eV Total energy + Delta-G solvation = -2849.266005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.37084 -37.71421 -36.64275 -33.32463 -32.46451 -31.71421 -29.85308 -29.04004 -25.23910 -23.95818 -23.74823 -21.62151 -21.03951 -18.70106 -17.12146 -16.46262 -16.06128 -15.75465 -14.94172 -14.61426 -14.21430 -13.99662 -13.34110 -13.05165 -12.77937 -12.70289 -12.37721 -11.91951 -11.77642 -11.53774 -11.29378 -11.12154 -10.96741 -10.56644 -10.34318 -10.24856 -9.83752 -9.64326 -9.40803 -9.33167 -9.19203 -8.69432 -8.41976 -6.99860 -6.03437 -4.17981 0.98802 1.20415 1.96024 3.23788 3.33164 3.38276 3.74168 4.36877 4.38518 4.69774 4.76564 4.99938 5.16864 5.34294 5.54549 5.68129 5.69894 5.87603 5.94048 6.08538 6.13260 6.34261 6.47706 6.54900 6.59685 6.76876 6.84804 6.95735 7.07887 7.19795 7.66059 7.79467 8.03763 8.19753 8.65100 8.92363 9.08387 9.52321 10.94150 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.004647 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.951443 B = 6024.251888 C = 6482.025067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.206 3.794 10 H 0.042 0.958 11 C -0.086 4.086 12 C -0.035 4.035 13 H 0.097 0.903 14 C 0.159 3.841 15 C -0.159 4.159 16 C -0.067 4.067 17 C -0.107 4.107 18 Cl -0.070 7.070 19 C 0.115 3.885 20 N -0.467 5.467 21 C -0.101 4.101 22 C 0.069 3.931 23 N -0.690 5.690 24 H 0.263 0.737 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.871 -12.613 4.761 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.076 0.924 9 C 0.097 3.903 10 H 0.060 0.940 11 C -0.124 4.124 12 C -0.054 4.054 13 H 0.116 0.884 14 C 0.022 3.978 15 C -0.179 4.179 16 C -0.093 4.093 17 C -0.136 4.136 18 Cl -0.041 7.041 19 C -0.043 4.043 20 N -0.176 5.176 21 C -0.139 4.139 22 C -0.061 4.061 23 N -0.324 5.324 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.066 -12.492 4.420 15.513 hybrid contribution 0.656 0.939 0.296 1.183 sum 8.722 -11.552 4.717 15.224 Atomic orbital electron populations 1.69734 1.05824 1.26859 1.51181 1.24998 0.94841 0.99160 0.94616 0.86588 0.80378 0.83822 0.77585 1.19685 1.20978 1.21103 1.21893 0.93694 0.91559 1.50471 0.92430 1.19056 0.90261 0.90605 0.90355 0.94043 1.21560 0.96946 0.99352 0.94567 1.20248 0.93616 0.94142 0.97422 0.88448 1.21954 0.90891 0.95352 0.89629 1.22160 1.01449 0.92755 1.01533 1.21509 0.91399 0.99908 0.96494 1.22040 0.92847 0.91331 1.07382 1.98355 1.60499 1.47814 1.97451 1.22793 0.99554 0.86738 0.95205 1.67780 1.03223 1.31140 1.15439 1.21635 0.96848 0.99924 0.95511 1.21506 0.94775 0.96386 0.93473 1.60934 1.15104 1.54873 1.01533 0.92705 0.92951 0.93788 0.83455 0.84159 0.82310 0.92172 0.93203 0.94247 0.93714 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 11.56 55.43 0.64 -23.65 16 2 C 0.07 1.74 5.38 -17.81 -0.10 1.64 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.54 -13.94 6.47 -34.44 -0.22 -14.17 16 8 H 0.06 1.53 6.76 -52.49 -0.36 1.17 16 9 C 0.21 4.92 3.05 -68.87 -0.21 4.71 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 11 C -0.09 -1.75 4.84 -26.65 -0.13 -1.88 16 12 C -0.04 -0.65 2.32 -91.64 -0.21 -0.87 16 13 H 0.10 2.07 6.74 -51.93 -0.35 1.72 16 14 C 0.16 2.61 5.80 -82.59 -0.48 2.14 16 15 C -0.16 -2.17 9.18 -39.45 -0.36 -2.53 16 16 C -0.07 -0.80 9.98 -39.24 -0.39 -1.19 16 17 C -0.11 -1.32 6.34 -39.35 -0.25 -1.57 16 18 Cl -0.07 -0.74 28.99 -51.86 -1.50 -2.24 16 19 C 0.12 1.58 10.99 -17.50 -0.19 1.39 16 20 N -0.47 -7.82 10.27 -9.44 -0.10 -7.92 16 21 C -0.10 -1.75 4.86 -26.65 -0.13 -1.88 16 22 C 0.07 1.41 6.30 -3.86 -0.02 1.38 16 23 N -0.69 -15.70 6.60 -108.02 -0.71 -16.41 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.15 1.81 6.25 -52.49 -0.33 1.48 16 28 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.06 0.96 6.37 -51.93 -0.33 0.63 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.90 6.99 -51.93 -0.36 0.54 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.36 8.86 6.95 -39.29 -0.27 8.58 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -26.87 288.97 -9.13 -36.00 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.09 Total: 6.86 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.70 Total: -12.83 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.17 Total: -47.98 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.87 -9.13 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.587 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds