Wall clock time and date at job start Mon Mar 30 2020 08:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00098 * 2 1 4 4 H 1.48501 * 109.47542 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47368 * 300.00196 * 3 2 1 6 6 H 1.48500 * 109.47233 * 60.00246 * 3 2 1 7 7 C 1.37883 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99682 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.45291 * 60.02846 * 9 7 2 11 11 C 1.53041 * 109.45918 * 180.02562 * 9 7 2 12 12 C 1.53124 * 109.27765 * 60.83699 * 11 9 7 13 13 H 1.09000 * 109.52342 * 297.68639 * 12 11 9 14 14 C 1.50702 * 109.52055 * 177.55951 * 12 11 9 15 15 C 1.38234 * 119.59999 * 274.99755 * 14 12 11 16 16 C 1.38608 * 119.17365 * 179.97438 * 15 14 12 17 17 C 1.38790 * 118.40887 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.42962 * 179.97438 * 17 16 15 19 19 C 1.38308 * 119.13468 * 0.27966 * 17 16 15 20 20 N 1.31841 * 119.60289 * 94.98118 * 14 12 11 21 21 C 1.53122 * 109.15959 * 57.65306 * 12 11 9 22 22 C 1.53032 * 109.27904 * 302.34645 * 21 12 11 23 23 N 1.46844 * 109.46145 * 300.05217 * 9 7 2 24 24 H 0.97001 * 119.99530 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50247 * 300.89610 * 11 9 7 26 26 H 1.08999 * 109.49878 * 180.77849 * 11 9 7 27 27 H 1.07997 * 120.41289 * 359.95989 * 15 14 12 28 28 H 1.07994 * 120.79731 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.62403 * 179.72664 * 19 17 16 30 30 H 1.08997 * 109.50289 * 62.28504 * 21 12 11 31 31 H 1.08998 * 109.50100 * 182.40123 * 21 12 11 32 32 H 1.09002 * 109.46520 * 299.16372 * 22 21 12 33 33 H 1.09003 * 109.46203 * 179.19608 * 22 21 12 34 34 H 1.00899 * 111.00158 * 65.83197 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6245 -2.5566 -0.8907 11 6 2.2457 -3.6623 -0.0005 12 6 3.1096 -3.5887 1.2616 13 1 3.6843 -2.6625 1.2562 14 6 4.0506 -4.7652 1.2971 15 6 3.6185 -5.9697 1.8200 16 6 4.4913 -7.0461 1.8478 17 6 5.7733 -6.8699 1.3462 18 17 6.9093 -8.1826 1.3557 19 6 6.1360 -5.6331 0.8445 20 7 5.2759 -4.6335 0.8286 21 6 2.2020 -3.6220 2.4944 22 6 1.2086 -2.4601 2.4221 23 7 0.4064 -2.5764 1.1982 24 1 -0.4849 0.8401 0.0004 25 1 2.8832 -3.5959 -0.8822 26 1 1.7014 -4.6065 -0.0145 27 1 2.6136 -6.0706 2.2025 28 1 4.1814 -7.9989 2.2508 29 1 7.1330 -5.4860 0.4563 30 1 1.6570 -4.5656 2.5197 31 1 2.8082 -3.5270 3.3953 32 1 1.7538 -1.5163 2.4107 33 1 0.5516 -2.4894 3.2913 34 1 -0.3198 -1.8763 1.1746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:16 Heat of formation + Delta-G solvation = -0.703562 kcal Electronic energy + Delta-G solvation = -17966.430069 eV Core-core repulsion = 15116.457518 eV Total energy + Delta-G solvation = -2849.972551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51414 -39.29051 -37.60626 -35.02583 -33.54467 -33.37576 -31.57869 -30.36569 -27.19208 -25.32607 -24.84490 -23.21060 -22.46336 -20.42181 -18.17369 -18.00866 -17.55170 -17.23401 -16.52533 -16.23557 -15.42437 -15.25009 -14.92780 -14.60541 -14.22201 -14.09938 -13.78656 -13.36777 -13.16425 -13.02697 -12.82110 -12.78884 -12.39175 -12.30576 -12.08686 -11.74951 -11.31808 -11.16251 -11.01827 -10.83938 -10.53629 -10.42322 -9.72099 -8.91487 -8.04767 -6.27582 -0.08158 0.20224 1.01288 1.33956 1.38509 1.48390 2.39049 2.64789 3.10695 3.24729 3.69612 3.77733 3.97446 4.00074 4.20019 4.23192 4.34734 4.58074 4.71399 4.74180 4.86509 4.90812 4.97835 5.03286 5.17004 5.21388 5.27585 5.40992 5.53782 5.58431 5.71752 5.74729 6.20641 6.72124 6.93912 6.94437 7.11508 7.45533 8.88550 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.004647 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.951443 B = 6024.251888 C = 6482.025067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.044 0.956 9 C 0.204 3.796 10 H 0.007 0.993 11 C -0.076 4.076 12 C -0.025 4.025 13 H 0.061 0.939 14 C 0.136 3.864 15 C -0.154 4.154 16 C -0.058 4.058 17 C -0.101 4.101 18 Cl -0.049 7.049 19 C 0.106 3.894 20 N -0.502 5.502 21 C -0.092 4.092 22 C 0.067 3.933 23 N -0.685 5.685 24 H 0.264 0.736 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.177 0.823 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.007 0.993 33 H 0.065 0.935 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -14.616 6.017 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.062 0.938 9 C 0.095 3.905 10 H 0.025 0.975 11 C -0.114 4.114 12 C -0.045 4.045 13 H 0.080 0.920 14 C -0.001 4.001 15 C -0.174 4.174 16 C -0.084 4.084 17 C -0.130 4.130 18 Cl -0.020 7.020 19 C -0.052 4.052 20 N -0.211 5.211 21 C -0.130 4.130 22 C -0.063 4.063 23 N -0.317 5.317 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.183 0.817 28 H 0.192 0.808 29 H 0.194 0.806 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.940 -14.506 5.680 17.962 hybrid contribution 0.460 1.476 -0.108 1.550 sum 9.401 -13.030 5.572 17.006 Atomic orbital electron populations 1.69824 1.06656 1.27440 1.51756 1.25600 0.95586 1.01763 0.94588 0.85735 0.79016 0.80646 0.77630 1.20002 1.20680 1.20576 1.22040 0.93136 0.92869 1.50222 0.93750 1.18975 0.90376 0.91388 0.89734 0.97497 1.21374 0.96303 0.98335 0.95430 1.19950 0.93650 0.94047 0.96841 0.92026 1.21578 0.90842 0.95543 0.92132 1.22259 1.02442 0.91923 1.00745 1.21861 0.90630 1.00647 0.95238 1.22122 0.93479 0.91389 1.06044 1.98370 1.59827 1.46560 1.97277 1.23068 0.99830 0.86879 0.95450 1.67648 1.03964 1.33013 1.16517 1.21583 0.96170 0.99463 0.95738 1.21619 0.95273 0.96417 0.93000 1.60950 1.14803 1.53895 1.02018 0.92633 0.94428 0.92303 0.81744 0.80812 0.80650 0.89814 0.91087 0.97422 0.91646 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.76 11.56 21.45 0.25 -50.51 16 2 C 0.02 1.31 5.38 84.66 0.46 1.76 16 3 Si 0.94 43.68 29.54 68.60 2.03 45.71 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -29.23 6.47 25.60 0.17 -29.06 16 8 H 0.04 2.46 6.76 -2.91 -0.02 2.44 16 9 C 0.20 10.09 3.05 44.19 0.13 10.22 16 10 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 11 C -0.08 -3.15 4.84 30.65 0.15 -3.00 16 12 C -0.03 -0.95 2.32 -11.46 -0.03 -0.97 16 13 H 0.06 2.71 6.74 -2.39 -0.02 2.69 16 14 C 0.14 4.31 5.80 42.56 0.25 4.56 16 15 C -0.15 -3.74 9.18 22.36 0.21 -3.53 16 16 C -0.06 -1.16 9.98 22.49 0.22 -0.93 16 17 C -0.10 -2.21 6.34 22.42 0.14 -2.07 16 18 Cl -0.05 -0.88 28.99 -2.72 -0.08 -0.96 16 19 C 0.11 2.73 10.99 84.70 0.93 3.66 16 20 N -0.50 -16.52 10.27 -183.80 -1.89 -18.41 16 21 C -0.09 -3.02 4.86 30.65 0.15 -2.87 16 22 C 0.07 2.71 6.30 86.33 0.54 3.26 16 23 N -0.68 -31.51 6.60 -495.68 -3.27 -34.78 16 24 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.17 3.36 6.25 -2.91 -0.02 3.34 16 28 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.08 2.39 6.37 -2.39 -0.02 2.38 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.01 0.35 6.99 -2.39 -0.02 0.33 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.34 17.37 6.95 -89.69 -0.62 16.75 16 Total: -1.00 -59.27 288.97 0.85 -58.42 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.50 Total: 19.53 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.32 Total: -18.99 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -4.91 Total: -103.70 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -59.27 0.85 -58.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.715 kcal (2) G-P(sol) polarization free energy of solvation -59.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds