Wall clock time and date at job start Mon Mar 30 2020 08:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48503 * 109.47560 * 240.00316 * 3 2 1 5 5 H 1.48498 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47361 * 120.00090 * 3 2 1 7 7 C 1.37884 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99726 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99986 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.45846 * 60.03179 * 9 7 2 11 11 C 1.53039 * 109.46390 * 180.02562 * 9 7 2 12 12 C 1.53116 * 109.28451 * 179.19947 * 11 9 7 13 13 H 1.09000 * 109.52243 * 62.30794 * 12 11 9 14 14 C 1.50696 * 109.52690 * 182.44139 * 12 11 9 15 15 C 1.38226 * 119.60343 * 84.97249 * 14 12 11 16 16 C 1.38618 * 119.17650 * 179.76722 * 15 14 12 17 17 C 1.38778 * 118.40724 * 0.50255 * 16 15 14 18 18 Cl 1.73599 * 120.43387 * 179.78097 * 17 16 15 19 19 C 1.38310 * 119.13647 * 359.49738 * 17 16 15 20 20 N 1.31858 * 119.60342 * 264.99641 * 14 12 11 21 21 C 1.53123 * 109.15483 * 302.34531 * 12 11 9 22 22 C 1.53034 * 109.27814 * 57.65516 * 21 12 11 23 23 N 1.46841 * 109.52365 * 300.81446 * 22 21 12 24 24 H 0.97000 * 119.99981 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.50147 * 59.25166 * 11 9 7 26 26 H 1.09004 * 109.53495 * 299.16290 * 11 9 7 27 27 H 1.08000 * 120.41679 * 0.02806 * 15 14 12 28 28 H 1.07997 * 120.79482 * 180.25313 * 16 15 14 29 29 H 1.07994 * 119.62869 * 180.27713 * 19 17 16 30 30 H 1.09001 * 109.49824 * 177.59530 * 21 12 11 31 31 H 1.08993 * 109.50359 * 297.70608 * 21 12 11 32 32 H 1.08999 * 109.46038 * 180.80094 * 22 21 12 33 33 H 1.09000 * 109.46536 * 60.83477 * 22 21 12 34 34 H 1.00898 * 111.00226 * 297.64927 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6244 -2.5567 -0.8906 11 6 2.2455 -3.6623 -0.0005 12 6 1.4758 -4.9858 0.0197 13 1 0.8703 -5.0688 -0.8829 14 6 2.4498 -6.1341 0.0802 15 6 2.9401 -6.5497 1.3040 16 6 3.8318 -7.6100 1.3499 17 6 4.2073 -8.2090 0.1557 18 17 5.3253 -9.5371 0.1515 19 6 3.6747 -7.7380 -1.0307 20 7 2.8245 -6.7299 -1.0348 21 6 0.5673 -5.0199 1.2518 22 6 -0.3787 -3.8174 1.2154 23 7 0.4058 -2.5763 1.1979 24 1 -0.4850 0.8400 0.0004 25 1 2.8812 -3.5975 0.8825 26 1 2.8629 -3.6140 -0.8976 27 1 2.6290 -6.0574 2.2135 28 1 4.2280 -7.9589 2.2920 29 1 3.9579 -8.2012 -1.9642 30 1 -0.0151 -5.9413 1.2490 31 1 1.1765 -4.9765 2.1545 32 1 -1.0173 -3.8310 2.0986 33 1 -0.9972 -3.8689 0.3194 34 1 0.9590 -2.4862 2.0369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:36 Heat of formation + Delta-G solvation = 19.546591 kcal Electronic energy + Delta-G solvation = -17699.443577 eV Core-core repulsion = 14850.349139 eV Total energy + Delta-G solvation = -2849.094438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -40.50421 -37.85924 -36.72443 -33.25063 -32.58487 -32.01913 -29.94787 -29.06822 -25.20235 -23.88347 -23.84777 -21.72472 -20.89369 -19.40721 -17.29384 -16.61754 -16.51849 -15.45558 -14.62139 -14.47352 -14.18078 -14.10428 -13.64503 -13.31774 -13.20223 -12.63952 -12.54971 -12.01334 -11.85954 -11.54197 -11.34018 -11.04534 -10.84149 -10.71308 -10.49724 -10.40211 -9.94155 -9.79876 -9.69995 -9.47574 -9.00380 -8.66266 -8.38325 -6.81583 -5.85401 -3.99985 0.87225 1.09079 1.87365 3.36462 3.41558 3.43847 3.61751 4.23194 4.49719 4.59773 4.63149 4.87683 5.18138 5.26229 5.37470 5.47918 5.55635 5.71195 5.80191 5.89932 5.92633 6.05862 6.17138 6.36753 6.38744 6.49152 6.60825 6.79040 6.82694 6.93549 7.53673 7.89400 7.92780 8.24898 8.62698 8.93683 9.15005 9.68789 11.18812 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.032683 B = 0.004236 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.500306 B = 6608.325898 C = 7078.646522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.225 3.775 10 H 0.039 0.961 11 C -0.129 4.129 12 C -0.043 4.043 13 H 0.087 0.913 14 C 0.159 3.841 15 C -0.159 4.159 16 C -0.065 4.065 17 C -0.105 4.105 18 Cl -0.066 7.066 19 C 0.117 3.883 20 N -0.469 5.469 21 C -0.149 4.149 22 C 0.058 3.942 23 N -0.648 5.648 24 H 0.256 0.744 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -16.140 2.956 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.071 0.929 9 C 0.117 3.883 10 H 0.057 0.943 11 C -0.169 4.169 12 C -0.062 4.062 13 H 0.106 0.894 14 C 0.021 3.979 15 C -0.179 4.179 16 C -0.092 4.092 17 C -0.134 4.134 18 Cl -0.038 7.038 19 C -0.042 4.042 20 N -0.177 5.177 21 C -0.189 4.189 22 C -0.073 4.073 23 N -0.275 5.275 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.179 0.821 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.520 -15.452 1.873 16.208 hybrid contribution 1.784 -0.354 1.058 2.104 sum 6.304 -15.806 2.931 17.267 Atomic orbital electron populations 1.70091 1.05649 1.25775 1.46666 1.24949 0.94610 0.98522 0.94204 0.86859 0.79781 0.83885 0.78481 1.20436 1.21385 1.20403 1.20908 0.92246 0.90232 1.54366 0.92940 1.19096 0.88583 0.90547 0.90053 0.94277 1.22427 0.99758 0.93663 1.01077 1.20350 0.94257 0.91584 1.00035 0.89447 1.21786 0.94069 0.94192 0.87820 1.22104 0.98163 0.97362 1.00222 1.21516 0.95632 0.94597 0.97413 1.22040 0.99339 0.95411 0.96637 1.98361 1.60756 1.45773 1.98909 1.22791 0.92226 0.92527 0.96618 1.67747 1.11756 1.07366 1.30833 1.22494 0.98863 1.00919 0.96665 1.21999 0.95994 0.88262 1.01019 1.60936 1.30506 1.30775 1.05298 0.93409 0.93250 0.92465 0.83650 0.84044 0.82146 0.92799 0.92283 0.92476 0.91938 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.21 12.77 55.43 0.71 -23.51 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.54 -14.45 8.71 -34.44 -0.30 -14.75 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.22 5.37 2.29 -68.88 -0.16 5.21 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 11 C -0.13 -2.58 4.56 -26.65 -0.12 -2.70 16 12 C -0.04 -0.73 2.57 -91.65 -0.24 -0.96 16 13 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.16 2.45 5.80 -82.59 -0.48 1.97 16 15 C -0.16 -2.07 9.18 -39.45 -0.36 -2.43 16 16 C -0.07 -0.75 9.98 -39.24 -0.39 -1.14 16 17 C -0.11 -1.25 6.34 -39.36 -0.25 -1.50 16 18 Cl -0.07 -0.68 28.99 -51.86 -1.50 -2.18 16 19 C 0.12 1.51 10.99 -17.51 -0.19 1.32 16 20 N -0.47 -7.36 10.27 -9.45 -0.10 -7.45 16 21 C -0.15 -2.28 4.85 -26.65 -0.13 -2.41 16 22 C 0.06 1.06 6.55 -3.84 -0.03 1.03 16 23 N -0.65 -14.44 5.80 -108.00 -0.63 -15.07 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.15 1.69 6.25 -52.49 -0.33 1.36 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.32 6.93 8.79 -39.29 -0.35 6.59 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -28.59 296.46 -9.16 -37.75 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.35 Total: 4.15 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.74 Total: -14.15 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.02 Total: -46.02 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.59 -9.16 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.300 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.53 seconds