Wall clock time and date at job start Mon Mar 30 2020 08:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48503 * 109.47560 * 240.00316 * 3 2 1 5 5 H 1.48498 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47361 * 120.00090 * 3 2 1 7 7 C 1.37884 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99726 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99986 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.45846 * 60.03179 * 9 7 2 11 11 C 1.53039 * 109.46390 * 180.02562 * 9 7 2 12 12 C 1.53116 * 109.28451 * 179.19947 * 11 9 7 13 13 H 1.09000 * 109.52243 * 62.30794 * 12 11 9 14 14 C 1.50696 * 109.52690 * 182.44139 * 12 11 9 15 15 C 1.38226 * 119.60343 * 84.97249 * 14 12 11 16 16 C 1.38618 * 119.17650 * 179.76722 * 15 14 12 17 17 C 1.38778 * 118.40724 * 0.50255 * 16 15 14 18 18 Cl 1.73599 * 120.43387 * 179.78097 * 17 16 15 19 19 C 1.38310 * 119.13647 * 359.49738 * 17 16 15 20 20 N 1.31858 * 119.60342 * 264.99641 * 14 12 11 21 21 C 1.53123 * 109.15483 * 302.34531 * 12 11 9 22 22 C 1.53034 * 109.27814 * 57.65516 * 21 12 11 23 23 N 1.46841 * 109.52365 * 300.81446 * 22 21 12 24 24 H 0.97000 * 119.99981 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.50147 * 59.25166 * 11 9 7 26 26 H 1.09004 * 109.53495 * 299.16290 * 11 9 7 27 27 H 1.08000 * 120.41679 * 0.02806 * 15 14 12 28 28 H 1.07997 * 120.79482 * 180.25313 * 16 15 14 29 29 H 1.07994 * 119.62869 * 180.27713 * 19 17 16 30 30 H 1.09001 * 109.49824 * 177.59530 * 21 12 11 31 31 H 1.08993 * 109.50359 * 297.70608 * 21 12 11 32 32 H 1.08999 * 109.46038 * 180.80094 * 22 21 12 33 33 H 1.09000 * 109.46536 * 60.83477 * 22 21 12 34 34 H 1.00898 * 111.00226 * 297.64927 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6244 -2.5567 -0.8906 11 6 2.2455 -3.6623 -0.0005 12 6 1.4758 -4.9858 0.0197 13 1 0.8703 -5.0688 -0.8829 14 6 2.4498 -6.1341 0.0802 15 6 2.9401 -6.5497 1.3040 16 6 3.8318 -7.6100 1.3499 17 6 4.2073 -8.2090 0.1557 18 17 5.3253 -9.5371 0.1515 19 6 3.6747 -7.7380 -1.0307 20 7 2.8245 -6.7299 -1.0348 21 6 0.5673 -5.0199 1.2518 22 6 -0.3787 -3.8174 1.2154 23 7 0.4058 -2.5763 1.1979 24 1 -0.4850 0.8400 0.0004 25 1 2.8812 -3.5975 0.8825 26 1 2.8629 -3.6140 -0.8976 27 1 2.6290 -6.0574 2.2135 28 1 4.2280 -7.9589 2.2920 29 1 3.9579 -8.2012 -1.9642 30 1 -0.0151 -5.9413 1.2490 31 1 1.1765 -4.9765 2.1545 32 1 -1.0173 -3.8310 2.0986 33 1 -0.9972 -3.8689 0.3194 34 1 0.9590 -2.4862 2.0369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:34 Heat of formation + Delta-G solvation = 1.861247 kcal Electronic energy + Delta-G solvation = -17700.210471 eV Core-core repulsion = 14850.349139 eV Total energy + Delta-G solvation = -2849.861332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.58454 -39.33244 -37.64075 -34.97944 -33.68478 -33.50871 -31.66575 -30.31923 -27.08629 -25.22007 -24.88231 -23.12899 -22.47749 -20.93275 -18.65873 -18.02730 -17.67463 -16.73855 -16.38678 -15.84971 -15.51143 -15.33175 -15.14761 -14.86730 -14.22318 -14.08885 -13.99137 -13.50837 -13.02212 -12.91322 -12.78309 -12.58864 -12.49197 -12.28377 -12.14966 -11.89096 -11.53687 -11.33278 -10.90301 -10.84479 -10.54236 -10.48191 -9.79166 -8.51551 -7.93216 -6.15256 -0.14208 0.13916 0.97148 1.46642 1.47198 1.54446 2.49107 2.58943 3.15005 3.27644 3.61141 3.72060 3.89640 4.00877 4.05759 4.15321 4.22415 4.43944 4.56177 4.60583 4.72484 4.80548 4.83463 4.99103 5.02260 5.10278 5.21916 5.25771 5.37362 5.48636 5.63401 5.82526 6.26154 6.70316 6.86108 7.17855 7.22604 7.57482 9.09161 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.032683 B = 0.004236 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.500306 B = 6608.325898 C = 7078.646522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.048 0.952 9 C 0.229 3.771 10 H -0.004 1.004 11 C -0.114 4.114 12 C -0.034 4.034 13 H 0.064 0.936 14 C 0.136 3.864 15 C -0.156 4.156 16 C -0.058 4.058 17 C -0.101 4.101 18 Cl -0.048 7.048 19 C 0.107 3.893 20 N -0.500 5.500 21 C -0.134 4.134 22 C 0.059 3.941 23 N -0.668 5.668 24 H 0.255 0.745 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.179 0.821 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -17.702 4.579 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.594 4.594 8 H 0.066 0.934 9 C 0.121 3.879 10 H 0.014 0.986 11 C -0.154 4.154 12 C -0.054 4.054 13 H 0.083 0.917 14 C -0.001 4.001 15 C -0.176 4.176 16 C -0.085 4.085 17 C -0.130 4.130 18 Cl -0.019 7.019 19 C -0.051 4.051 20 N -0.210 5.210 21 C -0.174 4.174 22 C -0.071 4.071 23 N -0.296 5.296 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.180 0.820 28 H 0.191 0.809 29 H 0.196 0.804 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.842 -17.029 3.499 18.340 hybrid contribution 1.423 0.019 0.510 1.512 sum 7.265 -17.010 4.009 18.926 Atomic orbital electron populations 1.70224 1.07010 1.26343 1.47931 1.25652 0.95366 1.01699 0.93976 0.85855 0.78526 0.79928 0.78585 1.20247 1.21185 1.19588 1.21299 0.92315 0.91899 1.53929 0.93384 1.18806 0.88683 0.91193 0.89256 0.98604 1.22122 0.98729 0.94298 1.00251 1.20103 0.94401 0.90844 1.00020 0.91712 1.21496 0.95019 0.94551 0.89017 1.22232 0.98041 0.97669 0.99637 1.21860 0.94540 0.93528 0.98528 1.22130 0.98920 0.95487 0.96483 1.98374 1.59936 1.44706 1.98875 1.23090 0.91881 0.92051 0.98067 1.67639 1.13050 1.08643 1.31622 1.22337 0.98214 1.00302 0.96564 1.22000 0.96087 0.87968 1.01081 1.60655 1.30543 1.33898 1.04553 0.93629 0.92630 0.94484 0.81971 0.80923 0.80400 0.90417 0.90205 0.90375 0.93852 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.48 12.77 21.45 0.27 -51.20 16 2 C 0.04 2.05 5.39 84.66 0.46 2.50 16 3 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.56 -30.56 8.71 25.60 0.22 -30.33 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.23 11.34 2.29 44.19 0.10 11.44 16 10 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 11 C -0.11 -4.64 4.56 30.65 0.14 -4.50 16 12 C -0.03 -1.16 2.57 -11.46 -0.03 -1.19 16 13 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 14 C 0.14 4.05 5.80 42.55 0.25 4.29 16 15 C -0.16 -3.62 9.18 22.36 0.21 -3.42 16 16 C -0.06 -1.14 9.98 22.49 0.22 -0.91 16 17 C -0.10 -2.12 6.34 22.42 0.14 -1.98 16 18 Cl -0.05 -0.83 28.99 -2.72 -0.08 -0.91 16 19 C 0.11 2.61 10.99 84.70 0.93 3.54 16 20 N -0.50 -15.43 10.27 -183.80 -1.89 -17.32 16 21 C -0.13 -3.88 4.85 30.65 0.15 -3.73 16 22 C 0.06 2.11 6.55 86.33 0.57 2.68 16 23 N -0.67 -30.20 5.80 -495.59 -2.88 -33.08 16 24 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.16 3.14 6.25 -2.91 -0.02 3.12 16 28 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.01 6.37 -2.39 -0.02 1.99 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.32 13.98 8.79 -89.70 -0.79 13.19 16 Total: -1.00 -63.14 296.46 1.13 -62.01 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.32 Total: 16.44 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.35 Total: -21.60 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -4.49 Total: -101.60 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -63.14 1.13 -62.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds