Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 110.53812 * 2 1 4 4 O 1.42091 * 110.54170 * 223.24450 * 2 1 3 5 5 C 1.76200 * 104.44570 * 111.62006 * 2 1 3 6 6 C 1.38251 * 119.99960 * 90.00648 * 5 2 1 7 7 C 1.38216 * 120.00268 * 179.97438 * 6 5 2 8 8 C 1.38254 * 119.99739 * 0.02562 * 7 6 5 9 9 C 1.38220 * 119.99893 * 0.24928 * 8 7 6 10 10 C 1.50698 * 119.99830 * 179.72414 * 9 8 7 11 11 C 1.50705 * 115.55208 * 234.39858 * 10 9 8 12 12 H 1.07994 * 120.00067 * 263.17765 * 11 10 9 13 13 C 1.37874 * 119.99958 * 83.17742 * 11 10 9 14 14 N 1.31515 * 120.00013 * 353.10456 * 13 11 10 15 15 Si 1.86794 * 120.00123 * 173.10797 * 13 11 10 16 16 H 1.48503 * 109.47100 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47016 * 119.99819 * 15 13 11 18 18 H 1.48502 * 109.47446 * 239.99651 * 15 13 11 19 19 C 1.53004 * 117.49858 * 88.73045 * 10 9 8 20 20 C 1.53003 * 117.49964 * 20.07345 * 10 9 8 21 21 C 1.38215 * 119.99966 * 270.02080 * 5 2 1 22 22 H 1.08993 * 109.47560 * 308.38249 * 1 2 3 23 23 H 1.09001 * 109.47418 * 68.38062 * 1 2 3 24 24 H 1.09002 * 109.46951 * 188.37878 * 1 2 3 25 25 H 1.07996 * 120.00424 * 359.97438 * 6 5 2 26 26 H 1.07995 * 120.00623 * 179.97438 * 7 6 5 27 27 H 1.08002 * 120.00428 * 179.97438 * 8 7 6 28 28 H 0.96996 * 120.00040 * 174.98373 * 14 13 11 29 29 H 1.08999 * 117.49753 * 0.02562 * 19 10 9 30 30 H 1.09004 * 117.49696 * 145.02105 * 19 10 9 31 31 H 1.09006 * 117.49345 * 214.97718 * 20 10 9 32 32 H 1.08998 * 117.49732 * 359.97258 * 20 10 9 33 33 H 1.07996 * 119.99803 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2536 -0.6287 1.5862 6 6 2.4261 -1.9884 1.7674 7 6 2.7715 -2.4815 3.0115 8 6 2.9438 -1.6151 4.0750 9 6 2.7657 -0.2563 3.8953 10 6 2.9474 0.6875 5.0560 11 6 1.7824 1.6002 5.3402 12 1 1.7795 2.6085 4.9533 13 6 0.7203 1.1480 6.0941 14 7 0.6581 -0.1163 6.4507 15 14 -0.6304 2.3311 6.6089 16 1 -0.3278 3.6868 6.0836 17 1 -1.9303 1.8672 6.0607 18 1 -0.7074 2.3798 8.0912 19 6 4.3531 1.2376 5.3058 20 6 3.7621 0.1887 6.2512 21 6 2.4255 0.2375 2.6495 22 1 -0.3634 0.6380 0.8055 23 1 -0.3634 0.3786 -0.9554 24 1 -0.3633 -1.0167 0.1498 25 1 2.2911 -2.6653 0.9368 26 1 2.9059 -3.5437 3.1532 27 1 3.2132 -2.0004 5.0473 28 1 -0.0493 -0.4195 7.0410 29 1 5.1463 0.9171 4.6303 30 1 4.4352 2.2595 5.6761 31 1 3.4556 0.5211 7.2430 32 1 4.1662 -0.8222 6.1981 33 1 2.2901 1.2995 2.5081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = -20.091519 kcal Electronic energy + Delta-G solvation = -18102.024071 eV Core-core repulsion = 15220.961750 eV Total energy + Delta-G solvation = -2881.062320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.89076 -36.83487 -36.03606 -35.66417 -32.10521 -30.64592 -29.95437 -29.31801 -25.77232 -22.86880 -22.49214 -20.99288 -19.82850 -18.40119 -17.28611 -16.10133 -15.97820 -15.58875 -15.40668 -14.68827 -14.22139 -14.13775 -13.40838 -13.22991 -13.06869 -13.03233 -12.23308 -12.05985 -11.83760 -11.72784 -11.64719 -11.23658 -11.11547 -10.95987 -10.84321 -10.55074 -10.31094 -10.13808 -9.69221 -9.37705 -8.66988 -8.58080 -8.46485 -7.75405 -6.17924 -4.25640 0.33756 1.52030 2.04161 3.16662 3.19053 3.28626 3.32755 3.96348 4.28670 4.36860 4.39985 4.86788 5.06255 5.10062 5.23677 5.40934 5.52887 5.74074 5.80314 5.89016 6.09030 6.21532 6.28242 6.45633 6.55222 6.64275 6.67681 6.88041 6.95044 7.22301 7.31064 7.41801 7.66362 7.75212 8.25059 8.77039 9.41143 10.90155 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.007287 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.616140 B = 3841.450637 C = 4420.215418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.501 3.499 3 O -0.942 6.942 4 O -0.951 6.951 5 C -0.664 4.664 6 C -0.056 4.056 7 C -0.147 4.147 8 C -0.058 4.058 9 C -0.012 4.012 10 C 0.065 3.935 11 C -0.495 4.495 12 H 0.066 0.934 13 C 0.074 3.926 14 N -0.870 5.870 15 Si 0.888 3.112 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.198 4.198 20 C -0.159 4.159 21 C -0.012 4.012 22 H 0.135 0.865 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.261 0.739 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -3.067 -7.871 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.683 3.317 3 O -0.939 6.939 4 O -0.948 6.948 5 C -0.753 4.753 6 C -0.075 4.075 7 C -0.166 4.166 8 C -0.077 4.077 9 C -0.014 4.014 10 C 0.064 3.936 11 C -0.533 4.533 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.506 5.506 15 Si 0.715 3.285 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.236 4.236 20 C -0.196 4.196 21 C -0.031 4.031 22 H 0.153 0.847 23 H 0.144 0.856 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.229 -2.954 -8.484 8.986 hybrid contribution -1.395 0.095 1.287 1.900 sum -1.166 -2.858 -7.197 7.831 Atomic orbital electron populations 1.30227 1.26458 1.12014 1.11422 1.04860 0.77591 0.74518 0.74705 1.93568 1.77183 1.36730 1.86463 1.93533 1.77445 1.61852 1.61979 1.30101 1.21038 1.03037 1.21083 1.20590 0.96578 0.92894 0.97450 1.21124 1.02798 0.99369 0.93274 1.21420 0.94511 0.93517 0.98202 1.19921 0.93713 0.93696 0.94041 1.17709 0.89988 0.95382 0.90477 1.20455 1.01299 0.97482 1.34038 0.91603 1.24987 0.97394 0.94826 0.95870 1.70028 1.33291 1.13662 1.33589 0.86593 0.81779 0.81557 0.78525 1.19435 1.20997 1.20810 1.23048 0.97566 0.98613 1.04330 1.22640 1.04670 0.95823 0.96464 1.20724 0.92307 0.99200 0.90902 0.84682 0.85632 0.85208 0.85473 0.86311 0.85758 0.92958 0.91356 0.89821 0.89759 0.91515 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.78 10.80 101.05 1.09 -5.69 16 2 S 2.50 36.28 5.80 -107.50 -0.62 35.65 16 3 O -0.94 -16.66 17.13 -57.54 -0.99 -17.64 16 4 O -0.95 -15.52 17.13 -57.54 -0.99 -16.51 16 5 C -0.66 -11.61 5.66 -39.58 -0.22 -11.83 16 6 C -0.06 -0.93 9.47 -39.58 -0.37 -1.31 16 7 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 8 C -0.06 -1.17 9.30 -39.58 -0.37 -1.54 16 9 C -0.01 -0.27 5.24 -104.62 -0.55 -0.82 16 10 C 0.06 1.52 1.58 -156.81 -0.25 1.28 16 11 C -0.50 -12.75 8.55 -34.44 -0.29 -13.04 16 12 H 0.07 1.69 7.82 -52.49 -0.41 1.28 16 13 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 14 N -0.87 -23.16 13.03 55.43 0.72 -22.44 16 15 Si 0.89 20.07 29.55 -169.99 -5.02 15.05 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.20 -4.17 9.94 -26.69 -0.27 -4.43 16 20 C -0.16 -3.49 9.12 -26.69 -0.24 -3.74 16 21 C -0.01 -0.25 8.88 -39.58 -0.35 -0.60 16 22 H 0.13 1.41 8.14 -51.93 -0.42 0.98 16 23 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 24 H 0.13 1.16 8.14 -51.92 -0.42 0.73 16 25 H 0.13 1.77 7.57 -52.49 -0.40 1.37 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.12 2.44 6.42 -52.49 -0.34 2.11 16 28 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 31 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 32 H 0.07 1.36 6.57 -51.93 -0.34 1.02 16 33 H 0.14 2.77 7.57 -52.49 -0.40 2.37 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -31.44 299.11 -8.69 -40.12 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.98 Total: 4.11 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: -2.32 Total: -42.85 kcal Atomic # 7 Polarization: -23.16 SS G_CDS: 0.72 Total: -22.44 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.97 Total: -34.15 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 36.28 SS G_CDS: -0.62 Total: 35.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.44 -8.69 -40.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.032 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds