Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 110.53812 * 2 1 4 4 O 1.42091 * 110.54170 * 223.24450 * 2 1 3 5 5 C 1.76200 * 104.44570 * 111.62006 * 2 1 3 6 6 C 1.38251 * 119.99960 * 90.00648 * 5 2 1 7 7 C 1.38216 * 120.00268 * 179.97438 * 6 5 2 8 8 C 1.38254 * 119.99739 * 0.02562 * 7 6 5 9 9 C 1.38220 * 119.99893 * 0.24928 * 8 7 6 10 10 C 1.50698 * 119.99830 * 179.72414 * 9 8 7 11 11 C 1.50705 * 115.55208 * 234.39858 * 10 9 8 12 12 H 1.07994 * 120.00067 * 263.17765 * 11 10 9 13 13 C 1.37874 * 119.99958 * 83.17742 * 11 10 9 14 14 N 1.31515 * 120.00013 * 353.10456 * 13 11 10 15 15 Si 1.86794 * 120.00123 * 173.10797 * 13 11 10 16 16 H 1.48503 * 109.47100 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47016 * 119.99819 * 15 13 11 18 18 H 1.48502 * 109.47446 * 239.99651 * 15 13 11 19 19 C 1.53004 * 117.49858 * 88.73045 * 10 9 8 20 20 C 1.53003 * 117.49964 * 20.07345 * 10 9 8 21 21 C 1.38215 * 119.99966 * 270.02080 * 5 2 1 22 22 H 1.08993 * 109.47560 * 308.38249 * 1 2 3 23 23 H 1.09001 * 109.47418 * 68.38062 * 1 2 3 24 24 H 1.09002 * 109.46951 * 188.37878 * 1 2 3 25 25 H 1.07996 * 120.00424 * 359.97438 * 6 5 2 26 26 H 1.07995 * 120.00623 * 179.97438 * 7 6 5 27 27 H 1.08002 * 120.00428 * 179.97438 * 8 7 6 28 28 H 0.96996 * 120.00040 * 174.98373 * 14 13 11 29 29 H 1.08999 * 117.49753 * 0.02562 * 19 10 9 30 30 H 1.09004 * 117.49696 * 145.02105 * 19 10 9 31 31 H 1.09006 * 117.49345 * 214.97718 * 20 10 9 32 32 H 1.08998 * 117.49732 * 359.97258 * 20 10 9 33 33 H 1.07996 * 119.99803 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2536 -0.6287 1.5862 6 6 2.4261 -1.9884 1.7674 7 6 2.7715 -2.4815 3.0115 8 6 2.9438 -1.6151 4.0750 9 6 2.7657 -0.2563 3.8953 10 6 2.9474 0.6875 5.0560 11 6 1.7824 1.6002 5.3402 12 1 1.7795 2.6085 4.9533 13 6 0.7203 1.1480 6.0941 14 7 0.6581 -0.1163 6.4507 15 14 -0.6304 2.3311 6.6089 16 1 -0.3278 3.6868 6.0836 17 1 -1.9303 1.8672 6.0607 18 1 -0.7074 2.3798 8.0912 19 6 4.3531 1.2376 5.3058 20 6 3.7621 0.1887 6.2512 21 6 2.4255 0.2375 2.6495 22 1 -0.3634 0.6380 0.8055 23 1 -0.3634 0.3786 -0.9554 24 1 -0.3633 -1.0167 0.1498 25 1 2.2911 -2.6653 0.9368 26 1 2.9059 -3.5437 3.1532 27 1 3.2132 -2.0004 5.0473 28 1 -0.0493 -0.4195 7.0410 29 1 5.1463 0.9171 4.6303 30 1 4.4352 2.2595 5.6761 31 1 3.4556 0.5211 7.2430 32 1 4.1662 -0.8222 6.1981 33 1 2.2901 1.2995 2.5081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = -40.055401 kcal Electronic energy + Delta-G solvation = -18102.889770 eV Core-core repulsion = 15220.961750 eV Total energy + Delta-G solvation = -2881.928019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39416 -38.08071 -37.67380 -36.91729 -34.04751 -32.04852 -31.42330 -30.22321 -27.70009 -24.37906 -23.98522 -22.67484 -21.42684 -19.68758 -18.81243 -17.77562 -17.12621 -16.86722 -16.77422 -16.57102 -15.82742 -15.59077 -14.96943 -14.59727 -14.05609 -13.93637 -13.77837 -13.64863 -13.18825 -13.09868 -13.02130 -12.99684 -12.87440 -12.63496 -12.25971 -12.03543 -11.99367 -11.55451 -11.37227 -11.12183 -10.49765 -10.26229 -10.03550 -9.33240 -8.12827 -6.25588 -0.77168 0.09407 0.58998 1.38731 1.43341 1.53172 1.98680 2.41061 2.66977 3.10413 3.15918 3.27320 3.50306 3.96462 4.12462 4.13552 4.24240 4.29816 4.40047 4.54299 4.58069 4.71256 4.90434 4.93517 4.96956 5.09762 5.18117 5.25140 5.41433 5.56053 5.64566 5.72281 5.88173 6.17182 6.37064 6.79458 7.42832 8.94363 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.007287 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.616140 B = 3841.450637 C = 4420.215418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.514 3.486 3 O -0.981 6.981 4 O -0.968 6.968 5 C -0.665 4.665 6 C -0.054 4.054 7 C -0.142 4.142 8 C -0.077 4.077 9 C -0.040 4.040 10 C 0.042 3.958 11 C -0.510 4.510 12 H 0.054 0.946 13 C 0.034 3.966 14 N -0.893 5.893 15 Si 0.944 3.056 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.187 4.187 20 C -0.157 4.157 21 C -0.037 4.037 22 H 0.138 0.862 23 H 0.160 0.840 24 H 0.155 0.845 25 H 0.161 0.839 26 H 0.154 0.846 27 H 0.119 0.881 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -4.069 -9.389 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.697 3.303 3 O -0.978 6.978 4 O -0.966 6.966 5 C -0.751 4.751 6 C -0.073 4.073 7 C -0.161 4.161 8 C -0.095 4.095 9 C -0.041 4.041 10 C 0.041 3.959 11 C -0.548 4.548 12 H 0.072 0.928 13 C -0.168 4.168 14 N -0.530 5.530 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.224 4.224 20 C -0.194 4.194 21 C -0.056 4.056 22 H 0.157 0.843 23 H 0.179 0.821 24 H 0.173 0.827 25 H 0.179 0.821 26 H 0.172 0.828 27 H 0.137 0.863 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.918 -3.959 -9.973 10.769 hybrid contribution -1.044 0.386 1.658 1.997 sum -1.963 -3.573 -8.315 9.260 Atomic orbital electron populations 1.30042 1.20304 1.14151 1.13689 1.04574 0.79725 0.73046 0.72942 1.93521 1.79637 1.38296 1.86385 1.93504 1.79489 1.61998 1.61575 1.30565 1.19645 1.03279 1.21641 1.21073 0.94966 0.93031 0.98238 1.21512 1.01165 1.00771 0.92622 1.21486 0.95737 0.93242 0.99076 1.19889 0.95772 0.94348 0.94099 1.17817 0.90128 0.96211 0.91720 1.20663 1.02458 0.97499 1.34168 0.92784 1.25582 0.99116 0.96109 0.95993 1.70117 1.33960 1.14751 1.34161 0.85733 0.79475 0.79827 0.78032 1.19321 1.20578 1.20662 1.23057 0.97103 0.98392 1.03812 1.22541 1.04848 0.96755 0.95266 1.20687 0.94126 0.99215 0.91599 0.84295 0.82145 0.82701 0.82108 0.82841 0.86263 0.93065 0.89801 0.89774 0.91682 0.90177 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -10.51 10.80 113.37 1.22 -9.29 16 2 S 2.51 68.09 5.80 -56.49 -0.33 67.76 16 3 O -0.98 -34.31 17.13 -127.65 -2.19 -36.50 16 4 O -0.97 -29.24 17.13 -127.65 -2.19 -31.43 16 5 C -0.67 -22.44 5.66 22.27 0.13 -22.32 16 6 C -0.05 -1.67 9.47 22.27 0.21 -1.46 16 7 C -0.14 -4.61 10.05 22.27 0.22 -4.38 16 8 C -0.08 -3.08 9.30 22.27 0.21 -2.87 16 9 C -0.04 -1.78 5.24 -19.87 -0.10 -1.88 16 10 C 0.04 2.00 1.58 -53.67 -0.08 1.92 16 11 C -0.51 -26.94 8.55 25.60 0.22 -26.72 16 12 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 13 C 0.03 1.77 5.40 84.65 0.46 2.23 16 14 N -0.89 -48.16 13.03 21.45 0.28 -47.88 16 15 Si 0.94 41.53 29.55 68.60 2.03 43.55 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.19 -7.97 9.94 30.62 0.30 -7.67 16 20 C -0.16 -7.06 9.12 30.62 0.28 -6.79 16 21 C -0.04 -1.54 8.88 22.27 0.20 -1.35 16 22 H 0.14 2.41 8.14 -2.39 -0.02 2.40 16 23 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.16 3.81 7.57 -2.91 -0.02 3.79 16 26 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 27 H 0.12 4.73 6.42 -2.91 -0.02 4.71 16 28 H 0.26 13.42 8.32 -92.71 -0.77 12.65 16 29 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 31 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.08 3.32 6.57 -2.39 -0.02 3.30 16 33 H 0.12 5.24 7.57 -2.91 -0.02 5.22 16 Total: -1.00 -68.67 299.11 1.97 -66.69 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.11 Total: 18.38 kcal Atomic # 6 Polarization: -83.84 SS G_CDS: 3.26 Total: -80.58 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.28 Total: -47.88 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -4.37 Total: -67.93 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 68.09 SS G_CDS: -0.33 Total: 67.76 kcal Total: -68.67 1.97 -66.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.637 kcal (2) G-P(sol) polarization free energy of solvation -68.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds