Wall clock time and date at job start Mon Mar 30 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47168 * 240.00506 * 3 2 1 5 5 H 1.48499 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47092 * 120.00150 * 3 2 1 7 7 C 1.37869 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00725 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.38192 * 120.02324 * 264.99525 * 10 9 7 12 12 C 1.38230 * 120.08006 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.11868 * 0.02562 * 12 11 10 14 14 C 1.38209 * 120.03898 * 0.25961 * 13 12 11 15 15 Cl 1.73604 * 120.03670 * 179.69730 * 14 13 12 16 16 C 1.38670 * 120.02143 * 85.02499 * 10 9 7 17 17 O 1.35919 * 120.05819 * 359.97276 * 16 10 9 18 18 C 1.42899 * 117.00435 * 90.00342 * 17 16 10 19 19 C 1.52991 * 109.47444 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.50173 * 243.62004 * 19 18 17 21 21 C 1.53008 * 60.00228 * 252.51414 * 20 19 18 22 22 H 0.96998 * 120.00153 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47150 * 60.00179 * 9 7 2 24 24 H 1.09006 * 109.47186 * 299.99830 * 9 7 2 25 25 H 1.08003 * 119.95941 * 0.05001 * 11 10 9 26 26 H 1.07998 * 119.94625 * 180.02562 * 12 11 10 27 27 H 1.08002 * 119.97693 * 179.97438 * 13 12 11 28 28 H 1.09005 * 109.46922 * 300.00772 * 18 17 16 29 29 H 1.09008 * 109.46762 * 59.99392 * 18 17 16 30 30 H 1.08996 * 115.55418 * 29.33676 * 19 18 17 31 31 H 1.08999 * 117.49674 * 0.02562 * 20 19 18 32 32 H 1.08999 * 117.50250 * 145.02517 * 20 19 18 33 33 H 1.08998 * 117.49494 * 252.51103 * 21 20 19 34 34 H 1.08998 * 117.49827 * 107.49298 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0018 11 6 2.5996 -4.2373 -1.1943 12 6 3.4975 -5.2883 -1.1968 13 6 4.0286 -5.7501 -0.0063 14 6 3.6584 -5.1647 1.1897 15 17 4.3192 -5.7496 2.6847 16 6 2.7615 -4.1046 1.1937 17 8 2.3999 -3.5231 2.3678 18 6 1.2630 -4.0695 3.0394 19 6 1.0117 -3.2913 4.3324 20 6 1.1469 -4.0524 5.6528 21 6 -0.2373 -3.6488 5.1407 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.1864 -3.8787 -2.1255 26 1 3.7847 -5.7497 -2.1300 27 1 4.7296 -6.5717 -0.0109 28 1 0.3883 -3.9939 2.3934 29 1 1.4499 -5.1170 3.2766 30 1 1.3208 -2.2461 4.3197 31 1 1.4153 -5.1075 5.6002 32 1 1.5452 -3.5081 6.5090 33 1 -0.7495 -2.8389 5.6600 34 1 -0.8799 -4.4384 4.7513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:16 Heat of formation + Delta-G solvation = -6.137552 kcal Electronic energy + Delta-G solvation = -17824.691175 eV Core-core repulsion = 14942.190238 eV Total energy + Delta-G solvation = -2882.500937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.59340 -37.58242 -36.14348 -36.03103 -33.40546 -31.20629 -29.66701 -27.43458 -26.44873 -23.40166 -22.26742 -21.90010 -20.62855 -20.42243 -17.42062 -16.39601 -16.05045 -15.67795 -15.49020 -14.46635 -14.38506 -14.11561 -13.52919 -13.33535 -12.81105 -12.45465 -12.23038 -11.86464 -11.46978 -11.35933 -11.24207 -11.03093 -10.89788 -10.67204 -10.63845 -10.44215 -10.27935 -10.13607 -9.65479 -9.46788 -9.11359 -8.39643 -8.16124 -7.95062 -6.02730 -4.04749 1.52862 1.75781 2.49825 3.34391 3.37718 3.42133 3.74071 4.03051 4.28603 4.48756 4.99642 5.07498 5.16925 5.26640 5.33431 5.48954 5.56388 5.70139 5.73941 5.79934 5.86922 5.95190 5.99077 6.03674 6.22497 6.36504 6.49755 6.59844 6.80132 6.87968 7.18562 7.49154 7.67816 7.92248 8.08993 8.31300 8.97500 9.57863 11.07539 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.008076 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.336233 B = 3466.304216 C = 4857.673368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.042 4.042 11 C -0.111 4.111 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.055 4.055 15 Cl -0.079 7.079 16 C 0.102 3.898 17 O -0.307 6.307 18 C 0.102 3.898 19 C -0.142 4.142 20 C -0.181 4.181 21 C -0.173 4.173 22 H 0.262 0.738 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -11.344 4.665 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.042 4.042 11 C -0.129 4.129 12 C -0.135 4.135 13 C -0.150 4.150 14 C -0.082 4.082 15 Cl -0.050 7.050 16 C 0.057 3.943 17 O -0.224 6.224 18 C 0.027 3.973 19 C -0.160 4.160 20 C -0.217 4.217 21 C -0.210 4.210 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.965 -11.122 4.904 12.512 hybrid contribution 0.509 0.754 0.046 0.911 sum 3.474 -10.368 4.950 12.003 Atomic orbital electron populations 1.69937 1.05947 1.26848 1.50718 1.24940 0.94858 0.99078 0.95218 0.86614 0.79566 0.82860 0.78774 1.20228 1.21275 1.20102 1.20892 0.92907 0.89492 1.50684 0.92606 1.18297 0.92245 0.89110 0.98509 1.21091 0.96531 0.95850 0.90774 1.21154 0.97875 0.95713 0.98206 1.21035 0.97739 0.97594 0.97086 1.20715 1.02214 1.01399 0.90628 1.21412 1.01505 0.97848 0.87446 1.98319 1.84878 1.87851 1.33975 1.18274 0.96665 0.92619 0.86728 1.86093 1.47097 1.56580 1.32580 1.22114 0.88295 0.94997 0.91845 1.22073 1.02163 1.01167 0.90591 1.23046 1.00108 1.00702 0.97892 1.22937 0.90857 1.03572 1.03641 0.92858 0.95244 0.94688 0.85301 0.85724 0.85632 0.92233 0.93583 0.86339 0.88999 0.88884 0.88476 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -14.05 9.09 -34.44 -0.31 -14.36 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.06 1.39 4.83 -29.03 -0.14 1.25 16 10 C -0.04 -0.90 5.08 -104.48 -0.53 -1.43 16 11 C -0.11 -2.03 9.68 -39.60 -0.38 -2.42 16 12 C -0.12 -1.77 10.04 -39.56 -0.40 -2.17 16 13 C -0.13 -2.02 9.83 -39.57 -0.39 -2.41 16 14 C -0.06 -0.98 6.33 -39.36 -0.25 -1.23 16 15 Cl -0.08 -1.26 28.51 -51.86 -1.48 -2.74 16 16 C 0.10 2.09 5.69 -39.19 -0.22 1.87 16 17 O -0.31 -6.47 8.79 -19.49 -0.17 -6.64 16 18 C 0.10 1.80 6.01 37.15 0.22 2.03 16 19 C -0.14 -2.26 6.06 -90.62 -0.55 -2.81 16 20 C -0.18 -2.32 10.18 -26.73 -0.27 -2.59 16 21 C -0.17 -2.24 10.25 -26.72 -0.27 -2.51 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 24 H 0.04 0.94 6.42 -51.93 -0.33 0.60 16 25 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 26 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.06 1.10 7.18 -51.93 -0.37 0.73 16 29 H 0.05 0.74 7.87 -51.92 -0.41 0.33 16 30 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 31 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -29.67 310.31 -9.30 -38.97 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.45 Total: -0.42 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -3.59 Total: -25.19 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.17 Total: -6.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.48 Total: -2.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.67 -9.30 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds