Wall clock time and date at job start Mon Mar 30 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47168 * 240.00506 * 3 2 1 5 5 H 1.48499 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47092 * 120.00150 * 3 2 1 7 7 C 1.37869 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00725 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99660 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.38192 * 120.02324 * 264.99525 * 10 9 7 12 12 C 1.38230 * 120.08006 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.11868 * 0.02562 * 12 11 10 14 14 C 1.38209 * 120.03898 * 0.25961 * 13 12 11 15 15 Cl 1.73604 * 120.03670 * 179.69730 * 14 13 12 16 16 C 1.38670 * 120.02143 * 85.02499 * 10 9 7 17 17 O 1.35919 * 120.05819 * 359.97276 * 16 10 9 18 18 C 1.42899 * 117.00435 * 90.00342 * 17 16 10 19 19 C 1.52991 * 109.47444 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.50173 * 243.62004 * 19 18 17 21 21 C 1.53008 * 60.00228 * 252.51414 * 20 19 18 22 22 H 0.96998 * 120.00153 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47150 * 60.00179 * 9 7 2 24 24 H 1.09006 * 109.47186 * 299.99830 * 9 7 2 25 25 H 1.08003 * 119.95941 * 0.05001 * 11 10 9 26 26 H 1.07998 * 119.94625 * 180.02562 * 12 11 10 27 27 H 1.08002 * 119.97693 * 179.97438 * 13 12 11 28 28 H 1.09005 * 109.46922 * 300.00772 * 18 17 16 29 29 H 1.09008 * 109.46762 * 59.99392 * 18 17 16 30 30 H 1.08996 * 115.55418 * 29.33676 * 19 18 17 31 31 H 1.08999 * 117.49674 * 0.02562 * 20 19 18 32 32 H 1.08999 * 117.50250 * 145.02517 * 20 19 18 33 33 H 1.08998 * 117.49494 * 252.51103 * 21 20 19 34 34 H 1.08998 * 117.49827 * 107.49298 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0018 11 6 2.5996 -4.2373 -1.1943 12 6 3.4975 -5.2883 -1.1968 13 6 4.0286 -5.7501 -0.0063 14 6 3.6584 -5.1647 1.1897 15 17 4.3192 -5.7496 2.6847 16 6 2.7615 -4.1046 1.1937 17 8 2.3999 -3.5231 2.3678 18 6 1.2630 -4.0695 3.0394 19 6 1.0117 -3.2913 4.3324 20 6 1.1469 -4.0524 5.6528 21 6 -0.2373 -3.6488 5.1407 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.1864 -3.8787 -2.1255 26 1 3.7847 -5.7497 -2.1300 27 1 4.7296 -6.5717 -0.0109 28 1 0.3883 -3.9939 2.3934 29 1 1.4499 -5.1170 3.2766 30 1 1.3208 -2.2461 4.3197 31 1 1.4153 -5.1075 5.6002 32 1 1.5452 -3.5081 6.5090 33 1 -0.7495 -2.8389 5.6600 34 1 -0.8799 -4.4384 4.7513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260036256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:16 Heat of formation + Delta-G solvation = -20.988650 kcal Electronic energy + Delta-G solvation = -17825.335167 eV Core-core repulsion = 14942.190238 eV Total energy + Delta-G solvation = -2883.144929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04346 -38.86801 -37.45866 -37.34805 -35.41068 -32.98182 -31.04214 -29.14847 -27.95344 -25.31297 -23.41224 -23.20313 -22.20865 -21.69297 -18.85946 -18.50244 -17.51183 -17.13535 -16.84389 -16.36919 -15.64458 -15.44396 -14.92520 -14.61715 -14.49345 -14.14329 -13.80497 -13.55067 -13.11388 -12.86580 -12.61863 -12.47964 -12.40637 -12.37609 -12.15026 -11.93920 -11.69265 -11.53326 -11.40789 -11.17177 -10.62465 -10.49548 -9.55626 -9.45825 -8.19519 -6.29732 0.14572 0.34788 1.15899 1.37194 1.40153 1.47873 2.36762 2.44662 2.80708 2.96769 3.12219 3.81177 3.91669 3.93061 4.07157 4.16145 4.22246 4.39413 4.46785 4.48287 4.59251 4.67308 4.73202 4.91420 4.96648 5.16133 5.21755 5.23152 5.24716 5.34583 5.44853 5.73772 5.81821 5.83870 6.17167 6.63842 6.78981 7.36710 8.90045 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.008076 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.336233 B = 3466.304216 C = 4857.673368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.046 0.954 9 C 0.068 3.932 10 C -0.079 4.079 11 C -0.118 4.118 12 C -0.099 4.099 13 C -0.114 4.114 14 C -0.064 4.064 15 Cl -0.063 7.063 16 C 0.082 3.918 17 O -0.334 6.334 18 C 0.107 3.893 19 C -0.179 4.179 20 C -0.157 4.157 21 C -0.160 4.160 22 H 0.264 0.736 23 H 0.008 0.992 24 H 0.006 0.994 25 H 0.133 0.867 26 H 0.172 0.828 27 H 0.165 0.835 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 -12.895 4.740 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.080 4.080 11 C -0.136 4.136 12 C -0.117 4.117 13 C -0.133 4.133 14 C -0.091 4.091 15 Cl -0.034 7.034 16 C 0.037 3.963 17 O -0.251 6.251 18 C 0.033 3.967 19 C -0.198 4.198 20 C -0.194 4.194 21 C -0.197 4.197 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.151 0.849 26 H 0.189 0.811 27 H 0.182 0.818 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.658 -12.684 4.977 14.399 hybrid contribution 0.005 1.141 0.036 1.142 sum 4.663 -11.543 5.013 13.420 Atomic orbital electron populations 1.70051 1.07355 1.27787 1.51509 1.25778 0.95726 1.02598 0.94780 0.85623 0.78471 0.78742 0.78982 1.19053 1.20315 1.20032 1.21175 0.92611 0.91188 1.50511 0.93572 1.17935 0.92530 0.90425 0.95953 1.20832 0.97864 0.96359 0.92967 1.21308 0.98641 0.96558 0.97092 1.21459 0.95483 0.95714 0.99015 1.21224 1.01347 1.01198 0.89491 1.21511 1.01105 0.97385 0.89137 1.98318 1.84409 1.87399 1.33282 1.18454 0.97821 0.93891 0.86117 1.86044 1.48000 1.57955 1.33070 1.22149 0.86660 0.96047 0.91854 1.22010 1.06017 1.00104 0.91628 1.23138 0.99392 1.00983 0.95864 1.23070 0.90685 1.03962 1.01993 0.92666 0.97391 0.97556 0.84898 0.81108 0.81751 0.94565 0.91935 0.89121 0.87734 0.87434 0.87401 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.44 0.28 -55.91 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.52 -30.23 9.09 25.60 0.23 -30.00 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 9 C 0.07 3.69 4.83 29.10 0.14 3.83 16 10 C -0.08 -3.53 5.08 -19.77 -0.10 -3.63 16 11 C -0.12 -4.24 9.68 22.26 0.22 -4.02 16 12 C -0.10 -2.68 10.04 22.28 0.22 -2.45 16 13 C -0.11 -3.12 9.83 22.28 0.22 -2.90 16 14 C -0.06 -2.19 6.33 22.41 0.14 -2.05 16 15 Cl -0.06 -1.88 28.51 -2.72 -0.08 -1.96 16 16 C 0.08 3.41 5.69 22.52 0.13 3.54 16 17 O -0.33 -14.69 8.79 -92.64 -0.81 -15.51 16 18 C 0.11 3.97 6.01 71.98 0.43 4.40 16 19 C -0.18 -5.92 6.06 -10.79 -0.07 -5.99 16 20 C -0.16 -3.82 10.18 30.60 0.31 -3.51 16 21 C -0.16 -4.05 10.25 30.60 0.31 -3.74 16 22 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.01 0.44 8.05 -2.39 -0.02 0.42 16 24 H 0.01 0.36 6.42 -2.38 -0.02 0.35 16 25 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 28 H 0.04 1.46 7.18 -2.38 -0.02 1.44 16 29 H 0.06 2.03 7.87 -2.38 -0.02 2.01 16 30 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.10 2.29 8.03 -2.39 -0.02 2.27 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.27 310.31 5.16 -62.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.09 Total: 9.25 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 2.66 Total: -45.52 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.81 Total: -15.51 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -67.27 5.16 -62.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.113 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds