Wall clock time and date at job start Mon Mar 30 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99734 * 2 1 4 4 C 1.38759 * 120.04790 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.96882 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.96547 * 179.97438 * 5 4 3 7 7 C 1.50708 * 109.46875 * 90.00246 * 6 5 4 8 8 H 1.08000 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99797 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99326 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00168 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47180 * 89.99902 * 11 9 7 13 13 H 1.48498 * 109.46751 * 210.00048 * 11 9 7 14 14 H 1.48494 * 109.46998 * 329.99674 * 11 9 7 15 15 C 1.38269 * 120.06832 * 359.97438 * 5 4 3 16 16 C 1.38367 * 120.09805 * 359.78693 * 15 5 4 17 17 Cl 1.73599 * 119.98490 * 180.25522 * 16 15 5 18 18 C 1.38277 * 120.02571 * 0.46983 * 16 15 5 19 19 C 1.50706 * 120.03417 * 179.78927 * 18 16 15 20 20 C 1.52995 * 117.49981 * 132.30115 * 19 18 16 21 21 C 1.52999 * 117.49833 * 63.64297 * 19 18 16 22 22 H 1.09004 * 109.47277 * 60.00172 * 1 2 3 23 23 H 1.09004 * 109.46998 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46969 * 299.99687 * 1 2 3 25 25 H 1.08000 * 120.01863 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.47245 * 209.99926 * 6 5 4 27 27 H 1.09003 * 109.47372 * 330.00291 * 6 5 4 28 28 H 0.97003 * 119.99326 * 180.02562 * 10 9 7 29 29 H 1.07996 * 119.94816 * 180.02562 * 15 5 4 30 30 H 1.09002 * 115.54650 * 277.97450 * 19 18 16 31 31 H 1.09002 * 117.50083 * 0.02562 * 20 19 18 32 32 H 1.08999 * 117.49445 * 145.02186 * 20 19 18 33 33 H 1.08998 * 117.49850 * 214.98904 * 21 19 18 34 34 H 1.09004 * 117.49590 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9199 3.6052 0.0011 6 6 1.1000 4.8696 0.0011 7 6 0.8263 5.2908 1.4220 8 1 1.2075 4.7014 2.2428 9 6 0.0892 6.4284 1.6739 10 7 -0.1501 6.7956 2.9140 11 14 -0.5695 7.4481 0.2542 12 1 -1.9192 6.9572 -0.1235 13 1 -0.6581 8.8719 0.6666 14 1 0.3451 7.3258 -0.9092 15 6 3.3007 3.6773 0.0016 16 6 4.0561 2.5181 0.0061 17 17 5.7895 2.6121 0.0134 18 6 3.4309 1.2847 0.0002 19 6 4.2535 0.0220 0.0002 20 6 3.8696 -1.0711 0.9994 21 6 5.1389 -0.2443 1.2193 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2125 2.3199 0.0005 26 1 1.6493 5.6588 -0.5124 27 1 0.1557 4.6905 -0.5131 28 1 -0.6690 7.5958 3.0912 29 1 3.7902 4.6399 0.0024 30 1 4.6284 -0.2948 -0.9730 31 1 3.0218 -0.8773 1.6566 32 1 3.9924 -2.1072 0.6837 33 1 6.0962 -0.7365 1.0481 34 1 5.1267 0.4941 2.0210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260055896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:20 Heat of formation + Delta-G solvation = -4.674245 kcal Electronic energy + Delta-G solvation = -17744.224337 eV Core-core repulsion = 14861.786853 eV Total energy + Delta-G solvation = -2882.437484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.12481 -37.60345 -36.65692 -36.01090 -33.21836 -31.36208 -29.60950 -28.17469 -26.92437 -23.78105 -22.50260 -21.47275 -21.31857 -20.14742 -17.23107 -16.85747 -16.11693 -16.00259 -15.43423 -14.81785 -14.59132 -14.29136 -13.69136 -13.61738 -12.88953 -12.73084 -12.12522 -12.00175 -11.71724 -11.63553 -11.31597 -11.24079 -11.13635 -10.83448 -10.66292 -10.53018 -10.29983 -9.99553 -9.96271 -9.79046 -9.43154 -8.65908 -8.10111 -7.71363 -6.14656 -4.15040 1.58733 1.81211 2.40402 3.22825 3.31638 3.33584 3.57887 3.98465 4.07784 4.34517 4.80417 5.09331 5.13827 5.16377 5.20172 5.33239 5.41894 5.53067 5.60555 5.69925 5.73793 5.81344 5.88940 5.97917 6.24392 6.29441 6.33861 6.60431 6.70132 6.72134 6.86304 7.04485 7.36397 7.57108 7.66297 8.40142 8.89803 9.44523 10.98025 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.006027 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.788697 B = 4644.805232 C = 5456.068165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.143 3.857 4 C -0.203 4.203 5 C 0.020 3.980 6 C 0.014 3.986 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.264 1.264 15 C -0.147 4.147 16 C 0.012 3.988 17 Cl -0.074 7.074 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.160 4.160 21 C -0.170 4.170 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.132 0.868 26 H 0.033 0.967 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -13.286 -7.081 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.097 3.903 4 C -0.222 4.222 5 C 0.019 3.981 6 C -0.023 4.023 7 C -0.554 4.554 8 H 0.093 0.907 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.704 3.296 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.188 1.188 15 C -0.166 4.166 16 C -0.015 4.015 17 Cl -0.045 7.045 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.197 4.197 21 C -0.207 4.207 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.010 -13.331 -6.960 16.195 hybrid contribution -0.582 0.873 -0.555 1.187 sum 5.427 -12.458 -7.515 15.529 Atomic orbital electron populations 1.23051 0.78809 1.03335 1.01822 1.86064 1.20856 1.26538 1.88794 1.18504 0.90724 0.84313 0.96728 1.21236 1.00392 0.91468 1.09102 1.20012 0.92798 0.95784 0.89495 1.18860 0.94334 0.90081 0.99010 1.20865 1.34294 1.10123 0.90120 0.90716 1.24981 0.95515 0.97031 0.95539 1.69897 1.39645 1.25197 1.18722 0.86819 0.79825 0.79804 0.83186 1.20130 1.21108 1.18847 1.20879 0.93449 0.97000 1.05232 1.20361 0.83816 0.93576 1.03727 1.98322 1.10692 1.98599 1.96871 1.17976 0.90016 0.92652 1.10635 1.20513 1.01733 0.94254 0.95067 1.22873 0.98767 0.95606 1.02466 1.22970 0.94699 1.03216 0.99827 0.92732 0.88646 0.92344 0.85044 0.94881 0.95529 0.92481 0.84978 0.87496 0.88597 0.89175 0.89010 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.59 8.44 -19.42 -0.16 -4.75 16 3 C 0.14 2.43 6.53 -39.22 -0.26 2.17 16 4 C -0.20 -3.77 8.69 -39.43 -0.34 -4.11 16 5 C 0.02 0.40 5.07 -104.65 -0.53 -0.13 16 6 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 7 C -0.52 -14.25 9.65 -34.44 -0.33 -14.59 16 8 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 11 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 15 C -0.15 -2.82 9.48 -39.52 -0.37 -3.19 16 16 C 0.01 0.21 6.29 -39.52 -0.25 -0.04 16 17 Cl -0.07 -1.11 27.12 -51.86 -1.41 -2.52 16 18 C -0.11 -1.86 5.43 -104.44 -0.57 -2.42 16 19 C -0.10 -1.37 4.98 -91.77 -0.46 -1.82 16 20 C -0.16 -2.02 9.16 -26.70 -0.24 -2.27 16 21 C -0.17 -2.15 9.16 -26.70 -0.24 -2.39 16 22 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 25 H 0.13 2.28 6.30 -52.49 -0.33 1.95 16 26 H 0.03 0.76 7.14 -51.93 -0.37 0.38 16 27 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 30 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -29.58 300.42 -8.16 -37.74 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.40 Total: 0.42 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.82 Total: -25.38 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.16 Total: -4.75 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.41 Total: -2.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.58 -8.16 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.068 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds