Wall clock time and date at job start Mon Mar 30 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99734 * 2 1 4 4 C 1.38759 * 120.04790 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.96882 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.96547 * 179.97438 * 5 4 3 7 7 C 1.50708 * 109.46875 * 90.00246 * 6 5 4 8 8 H 1.08000 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99797 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99326 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00168 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47180 * 89.99902 * 11 9 7 13 13 H 1.48498 * 109.46751 * 210.00048 * 11 9 7 14 14 H 1.48494 * 109.46998 * 329.99674 * 11 9 7 15 15 C 1.38269 * 120.06832 * 359.97438 * 5 4 3 16 16 C 1.38367 * 120.09805 * 359.78693 * 15 5 4 17 17 Cl 1.73599 * 119.98490 * 180.25522 * 16 15 5 18 18 C 1.38277 * 120.02571 * 0.46983 * 16 15 5 19 19 C 1.50706 * 120.03417 * 179.78927 * 18 16 15 20 20 C 1.52995 * 117.49981 * 132.30115 * 19 18 16 21 21 C 1.52999 * 117.49833 * 63.64297 * 19 18 16 22 22 H 1.09004 * 109.47277 * 60.00172 * 1 2 3 23 23 H 1.09004 * 109.46998 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46969 * 299.99687 * 1 2 3 25 25 H 1.08000 * 120.01863 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.47245 * 209.99926 * 6 5 4 27 27 H 1.09003 * 109.47372 * 330.00291 * 6 5 4 28 28 H 0.97003 * 119.99326 * 180.02562 * 10 9 7 29 29 H 1.07996 * 119.94816 * 180.02562 * 15 5 4 30 30 H 1.09002 * 115.54650 * 277.97450 * 19 18 16 31 31 H 1.09002 * 117.50083 * 0.02562 * 20 19 18 32 32 H 1.08999 * 117.49445 * 145.02186 * 20 19 18 33 33 H 1.08998 * 117.49850 * 214.98904 * 21 19 18 34 34 H 1.09004 * 117.49590 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9199 3.6052 0.0011 6 6 1.1000 4.8696 0.0011 7 6 0.8263 5.2908 1.4220 8 1 1.2075 4.7014 2.2428 9 6 0.0892 6.4284 1.6739 10 7 -0.1501 6.7956 2.9140 11 14 -0.5695 7.4481 0.2542 12 1 -1.9192 6.9572 -0.1235 13 1 -0.6581 8.8719 0.6666 14 1 0.3451 7.3258 -0.9092 15 6 3.3007 3.6773 0.0016 16 6 4.0561 2.5181 0.0061 17 17 5.7895 2.6121 0.0134 18 6 3.4309 1.2847 0.0002 19 6 4.2535 0.0220 0.0002 20 6 3.8696 -1.0711 0.9994 21 6 5.1389 -0.2443 1.2193 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2125 2.3199 0.0005 26 1 1.6493 5.6588 -0.5124 27 1 0.1557 4.6905 -0.5131 28 1 -0.6690 7.5958 3.0912 29 1 3.7902 4.6399 0.0024 30 1 4.6284 -0.2948 -0.9730 31 1 3.0218 -0.8773 1.6566 32 1 3.9924 -2.1072 0.6837 33 1 6.0962 -0.7365 1.0481 34 1 5.1267 0.4941 2.0210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260055896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:20 Heat of formation + Delta-G solvation = -20.160165 kcal Electronic energy + Delta-G solvation = -17744.895857 eV Core-core repulsion = 14861.786853 eV Total energy + Delta-G solvation = -2883.109003 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41462 -38.82604 -37.87612 -37.29771 -35.15662 -33.07490 -30.96881 -29.79007 -28.07793 -25.47825 -23.63766 -22.86345 -22.65987 -21.45395 -18.99978 -18.53075 -17.34724 -17.26706 -16.62766 -16.34666 -15.88498 -15.84320 -15.12834 -14.88264 -14.52027 -14.20778 -13.74017 -13.67887 -12.90282 -12.84301 -12.75368 -12.59042 -12.38007 -12.27830 -12.15171 -12.00632 -11.75025 -11.60649 -11.32321 -11.14712 -11.03088 -10.80415 -9.51543 -9.08974 -8.31394 -6.37581 0.17619 0.39437 1.08248 1.36416 1.39059 1.50395 2.34225 2.42530 2.62751 2.95655 3.03105 3.60736 3.95798 3.98901 4.09922 4.23922 4.30998 4.38275 4.40930 4.45021 4.50789 4.74066 4.83155 4.85990 4.97442 5.02332 5.07962 5.16363 5.25745 5.32686 5.36002 5.49504 5.63145 5.76430 6.21907 6.38800 6.68272 7.25964 8.85015 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.006027 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.788697 B = 4644.805232 C = 5456.068165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.308 6.308 3 C 0.145 3.855 4 C -0.211 4.211 5 C -0.009 4.009 6 C 0.021 3.979 7 C -0.521 4.521 8 H 0.027 0.973 9 C 0.011 3.989 10 N -0.947 5.947 11 Si 0.949 3.051 12 H -0.262 1.262 13 H -0.284 1.284 14 H -0.244 1.244 15 C -0.162 4.162 16 C 0.008 3.992 17 Cl -0.052 7.052 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.151 4.151 21 C -0.164 4.164 22 H 0.062 0.938 23 H 0.130 0.870 24 H 0.050 0.950 25 H 0.138 0.862 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.268 0.732 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -14.815 -8.948 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.221 6.221 3 C 0.099 3.901 4 C -0.230 4.230 5 C -0.009 4.009 6 C -0.016 4.016 7 C -0.559 4.559 8 H 0.046 0.954 9 C -0.187 4.187 10 N -0.587 5.587 11 Si 0.772 3.228 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.168 1.168 15 C -0.181 4.181 16 C -0.019 4.019 17 Cl -0.023 7.023 18 C -0.112 4.112 19 C -0.129 4.129 20 C -0.188 4.188 21 C -0.201 4.201 22 H 0.080 0.920 23 H 0.148 0.852 24 H 0.068 0.932 25 H 0.156 0.844 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.342 -14.884 -8.837 18.434 hybrid contribution -0.625 1.206 0.111 1.363 sum 5.716 -13.678 -8.726 17.202 Atomic orbital electron populations 1.23350 0.76997 1.05647 1.01793 1.86076 1.22643 1.25122 1.88279 1.18570 0.91068 0.84619 0.95825 1.21320 1.00940 0.91485 1.09247 1.19864 0.93314 0.95493 0.92272 1.18697 0.95357 0.91568 0.96000 1.21068 1.33758 1.09668 0.91425 0.95450 1.25956 0.95790 0.98411 0.98500 1.70058 1.41080 1.26159 1.21426 0.85672 0.79814 0.77550 0.79780 1.18722 1.20950 1.16778 1.20890 0.93292 0.97697 1.06178 1.20416 0.85007 0.93317 1.03157 1.98321 1.08679 1.98582 1.96729 1.18360 0.90383 0.93642 1.08789 1.20606 1.02429 0.93562 0.96327 1.22910 0.98109 0.96532 1.01223 1.23009 0.95863 1.02822 0.98371 0.91977 0.85203 0.93159 0.84429 0.94516 0.94402 0.92287 0.85383 0.86030 0.90118 0.86681 0.86619 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.31 -8.59 8.44 -92.41 -0.78 -9.37 16 3 C 0.15 4.82 6.53 22.50 0.15 4.97 16 4 C -0.21 -7.84 8.69 22.37 0.19 -7.65 16 5 C -0.01 -0.37 5.07 -19.88 -0.10 -0.47 16 6 C 0.02 0.97 4.17 29.10 0.12 1.10 16 7 C -0.52 -29.78 9.65 25.60 0.25 -29.53 16 8 H 0.03 1.76 7.98 -2.91 -0.02 1.74 16 9 C 0.01 0.62 5.47 84.65 0.46 1.09 16 10 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 11 Si 0.95 42.80 27.47 68.60 1.88 44.69 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 15 C -0.16 -6.29 9.48 22.31 0.21 -6.08 16 16 C 0.01 0.27 6.29 22.31 0.14 0.41 16 17 Cl -0.05 -1.51 27.12 -2.72 -0.07 -1.58 16 18 C -0.11 -3.55 5.43 -19.75 -0.11 -3.66 16 19 C -0.11 -2.85 4.98 -11.54 -0.06 -2.91 16 20 C -0.15 -3.41 9.16 30.62 0.28 -3.13 16 21 C -0.16 -3.75 9.16 30.62 0.28 -3.47 16 22 H 0.06 1.24 7.66 -2.38 -0.02 1.22 16 23 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 25 H 0.14 4.77 6.30 -2.91 -0.02 4.75 16 26 H 0.04 1.66 7.14 -2.39 -0.02 1.64 16 27 H 0.04 1.66 7.51 -2.39 -0.02 1.64 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 29 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.08 2.09 7.46 -2.39 -0.02 2.08 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -65.32 300.42 5.30 -60.02 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.04 Total: 12.54 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 2.93 Total: -47.88 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.30 Total: -58.41 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.78 Total: -9.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.69 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -65.32 5.30 -60.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.856 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds