Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47181 * 299.99601 * 3 2 1 6 6 H 1.48495 * 109.47329 * 59.99547 * 3 2 1 7 7 C 1.37874 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.38278 * 119.93868 * 269.97809 * 11 10 9 13 13 C 1.38158 * 120.07804 * 180.02562 * 12 11 10 14 14 C 1.38704 * 119.95413 * 359.97438 * 13 12 11 15 15 O 1.35922 * 120.05775 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00307 * 354.44742 * 15 14 13 17 17 C 1.52994 * 117.50048 * 224.92985 * 16 15 14 18 18 C 1.53000 * 117.49855 * 156.26761 * 16 15 14 19 19 C 1.38815 * 119.88287 * 0.02562 * 14 13 12 20 20 Cl 1.73598 * 120.04007 * 179.97438 * 19 14 13 21 21 C 1.38240 * 119.94315 * 89.99866 * 11 10 9 22 22 H 0.96992 * 120.00104 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47706 * 59.99939 * 9 7 2 24 24 H 1.09004 * 109.47463 * 299.99637 * 9 7 2 25 25 H 1.09004 * 109.46886 * 59.99589 * 10 9 7 26 26 H 1.09000 * 109.46689 * 299.99578 * 10 9 7 27 27 H 1.07999 * 119.96431 * 0.02562 * 12 11 10 28 28 H 1.07998 * 120.01818 * 180.02562 * 13 12 11 29 29 H 1.09000 * 115.54887 * 10.59886 * 16 15 14 30 30 H 1.08997 * 117.50162 * 0.02562 * 17 16 15 31 31 H 1.09004 * 117.49956 * 145.02216 * 17 16 15 32 32 H 1.09003 * 117.49462 * 214.97769 * 18 16 15 33 33 H 1.08994 * 117.50263 * 0.02562 * 18 16 15 34 34 H 1.08009 * 119.97743 * 0.24881 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4919 -4.9672 0.0012 12 6 1.1459 -5.5649 1.1992 13 6 0.4556 -6.7616 1.2019 14 6 0.1088 -7.3639 0.0016 15 8 -0.5699 -8.5415 0.0018 16 6 -0.7872 -9.1648 1.2692 17 6 -0.5321 -10.6700 1.3693 18 6 -1.9656 -10.1335 1.3873 19 6 0.4570 -6.7623 -1.2000 20 17 0.0257 -7.5128 -2.7048 21 6 1.1482 -5.5649 -1.1970 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8923 26 1 2.8727 -3.6047 -0.8878 27 1 1.4156 -5.0957 2.1338 28 1 0.1855 -7.2274 2.1381 29 1 -0.5479 -8.5548 2.1403 30 1 -0.1981 -11.1849 0.4685 31 1 -0.1254 -11.0504 2.3063 32 1 -2.5013 -10.1610 2.3362 33 1 -2.5749 -10.2956 0.4982 34 1 1.4234 -5.0983 -2.1314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -1.923485 kcal Electronic energy + Delta-G solvation = -16977.360504 eV Core-core repulsion = 14095.042303 eV Total energy + Delta-G solvation = -2882.318202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21088 -38.19278 -36.26006 -35.54421 -33.67861 -31.71774 -30.64486 -28.44676 -25.06396 -23.85342 -22.71865 -22.18848 -21.22634 -20.06316 -18.61481 -16.45665 -16.26110 -15.43605 -15.31924 -14.94905 -14.48601 -14.46256 -13.90418 -13.67498 -12.86386 -12.68673 -12.41058 -12.29174 -11.84375 -11.73074 -11.42128 -11.15421 -10.94566 -10.91391 -10.70460 -10.62622 -10.47481 -10.15287 -9.87539 -9.50822 -9.11077 -8.65709 -8.36817 -7.74044 -6.01479 -4.04842 1.37297 1.53967 2.36291 2.92052 3.30195 3.37907 3.41606 3.49586 3.88444 4.38150 4.44807 4.62349 4.74505 4.88184 4.99376 5.23677 5.32599 5.34262 5.50466 5.56610 5.63746 5.69074 5.80956 5.85546 6.24912 6.30712 6.45440 6.59145 6.79042 6.94242 7.05181 7.37795 7.65595 7.77880 7.97908 8.37951 9.02417 9.59560 11.09506 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.003865 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.066632 B = 7243.643269 C = 7715.954524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.076 4.076 11 C -0.078 4.078 12 C -0.075 4.075 13 C -0.196 4.196 14 C 0.118 3.882 15 O -0.276 6.276 16 C 0.002 3.998 17 C -0.185 4.185 18 C -0.171 4.171 19 C -0.063 4.063 20 Cl -0.070 7.070 21 C -0.074 4.074 22 H 0.260 0.740 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -19.215 2.540 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.114 4.114 11 C -0.078 4.078 12 C -0.093 4.093 13 C -0.215 4.215 14 C 0.073 3.927 15 O -0.189 6.189 16 C -0.055 4.055 17 C -0.222 4.222 18 C -0.208 4.208 19 C -0.090 4.090 20 Cl -0.042 7.042 21 C -0.092 4.092 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.000 -19.276 2.233 19.430 hybrid contribution 0.267 0.933 0.054 0.972 sum -0.733 -18.342 2.288 18.499 Atomic orbital electron populations 1.69981 1.06062 1.26545 1.50678 1.25026 0.94837 0.99274 0.95278 0.86541 0.80114 0.83786 0.77593 1.19699 1.21006 1.21022 1.21279 0.93100 0.90914 1.50781 0.92493 1.19106 0.93679 0.90474 0.97638 1.20819 0.98281 0.90630 1.01635 1.20283 0.98699 0.97242 0.91600 1.21007 0.96134 0.93581 0.98614 1.21102 1.05363 0.98699 0.96295 1.18466 0.94957 0.86541 0.92723 1.86065 1.70224 1.33251 1.29347 1.23049 1.04515 0.90789 0.87107 1.23460 0.98970 0.95733 1.04014 1.23353 0.91681 1.01753 1.04059 1.20117 1.06828 0.97159 0.84863 1.98334 1.92269 1.82059 1.31502 1.20882 0.96652 0.92146 0.99567 0.93012 0.96330 0.96399 0.91914 0.91968 0.85096 0.84854 0.85642 0.87894 0.87833 0.87605 0.87809 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.71 4.96 -27.88 -0.14 0.57 16 10 C -0.08 -1.52 5.28 -27.88 -0.15 -1.67 16 11 C -0.08 -1.37 5.13 -104.61 -0.54 -1.91 16 12 C -0.08 -1.18 9.69 -39.60 -0.38 -1.56 16 13 C -0.20 -2.77 9.19 -39.44 -0.36 -3.13 16 14 C 0.12 1.82 6.67 -39.20 -0.26 1.56 16 15 O -0.28 -3.90 9.85 -19.50 -0.19 -4.09 16 16 C 0.00 0.02 6.21 -26.73 -0.17 -0.14 16 17 C -0.18 -1.55 10.48 -26.70 -0.28 -1.83 16 18 C -0.17 -1.45 10.48 -26.69 -0.28 -1.73 16 19 C -0.06 -1.02 6.33 -39.36 -0.25 -1.27 16 20 Cl -0.07 -1.06 28.50 -51.86 -1.48 -2.54 16 21 C -0.07 -1.25 9.48 -39.57 -0.38 -1.63 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 26 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 27 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.13 1.47 5.52 -52.49 -0.29 1.18 16 29 H 0.13 1.14 5.33 -51.93 -0.28 0.87 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -30.52 309.01 -9.22 -39.74 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.33 Total: -2.12 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -3.59 Total: -26.03 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.19 Total: -4.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.48 Total: -2.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.52 -9.22 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.813 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds