Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47181 * 299.99601 * 3 2 1 6 6 H 1.48495 * 109.47329 * 59.99547 * 3 2 1 7 7 C 1.37874 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.38278 * 119.93868 * 269.97809 * 11 10 9 13 13 C 1.38158 * 120.07804 * 180.02562 * 12 11 10 14 14 C 1.38704 * 119.95413 * 359.97438 * 13 12 11 15 15 O 1.35922 * 120.05775 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00307 * 354.44742 * 15 14 13 17 17 C 1.52994 * 117.50048 * 224.92985 * 16 15 14 18 18 C 1.53000 * 117.49855 * 156.26761 * 16 15 14 19 19 C 1.38815 * 119.88287 * 0.02562 * 14 13 12 20 20 Cl 1.73598 * 120.04007 * 179.97438 * 19 14 13 21 21 C 1.38240 * 119.94315 * 89.99866 * 11 10 9 22 22 H 0.96992 * 120.00104 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47706 * 59.99939 * 9 7 2 24 24 H 1.09004 * 109.47463 * 299.99637 * 9 7 2 25 25 H 1.09004 * 109.46886 * 59.99589 * 10 9 7 26 26 H 1.09000 * 109.46689 * 299.99578 * 10 9 7 27 27 H 1.07999 * 119.96431 * 0.02562 * 12 11 10 28 28 H 1.07998 * 120.01818 * 180.02562 * 13 12 11 29 29 H 1.09000 * 115.54887 * 10.59886 * 16 15 14 30 30 H 1.08997 * 117.50162 * 0.02562 * 17 16 15 31 31 H 1.09004 * 117.49956 * 145.02216 * 17 16 15 32 32 H 1.09003 * 117.49462 * 214.97769 * 18 16 15 33 33 H 1.08994 * 117.50263 * 0.02562 * 18 16 15 34 34 H 1.08009 * 119.97743 * 0.24881 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4919 -4.9672 0.0012 12 6 1.1459 -5.5649 1.1992 13 6 0.4556 -6.7616 1.2019 14 6 0.1088 -7.3639 0.0016 15 8 -0.5699 -8.5415 0.0018 16 6 -0.7872 -9.1648 1.2692 17 6 -0.5321 -10.6700 1.3693 18 6 -1.9656 -10.1335 1.3873 19 6 0.4570 -6.7623 -1.2000 20 17 0.0257 -7.5128 -2.7048 21 6 1.1482 -5.5649 -1.1970 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8923 26 1 2.8727 -3.6047 -0.8878 27 1 1.4156 -5.0957 2.1338 28 1 0.1855 -7.2274 2.1381 29 1 -0.5479 -8.5548 2.1403 30 1 -0.1981 -11.1849 0.4685 31 1 -0.1254 -11.0504 2.3063 32 1 -2.5013 -10.1610 2.3362 33 1 -2.5749 -10.2956 0.4982 34 1 1.4234 -5.0983 -2.1314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -17.298418 kcal Electronic energy + Delta-G solvation = -16978.027211 eV Core-core repulsion = 14095.042303 eV Total energy + Delta-G solvation = -2882.984909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31085 -39.28228 -37.49269 -36.49105 -35.51126 -33.48225 -31.86371 -30.07439 -26.81797 -24.97263 -23.74659 -23.34386 -22.48568 -21.44156 -19.63598 -18.53122 -17.38750 -16.73930 -16.50310 -16.25224 -15.96055 -15.47909 -15.10764 -14.88261 -14.48937 -14.28684 -13.87536 -13.46271 -13.40446 -12.96273 -12.84322 -12.44823 -12.41618 -12.28266 -12.22329 -11.82511 -11.70625 -11.55276 -11.37607 -11.16413 -10.86721 -10.54586 -9.88093 -8.98322 -8.17763 -6.29521 0.14441 0.29636 1.14334 1.41891 1.42555 1.55651 1.97142 2.42127 2.56671 2.87402 3.15442 3.53809 3.85885 3.88365 3.96747 3.98067 4.09056 4.30866 4.38104 4.58861 4.68360 4.73227 4.85142 4.89187 4.96019 5.06500 5.17509 5.19509 5.19589 5.49889 5.52723 5.66709 5.83166 5.86827 6.24715 6.33216 6.88134 7.40071 8.93768 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.003865 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.066632 B = 7243.643269 C = 7715.954524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.034 3.966 10 C -0.061 4.061 11 C -0.102 4.102 12 C -0.076 4.076 13 C -0.189 4.189 14 C 0.122 3.878 15 O -0.290 6.290 16 C -0.030 4.030 17 C -0.173 4.173 18 C -0.164 4.164 19 C -0.080 4.080 20 Cl -0.066 7.066 21 C -0.082 4.082 22 H 0.263 0.737 23 H -0.013 1.013 24 H -0.006 1.006 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.146 0.854 28 H 0.169 0.831 29 H 0.141 0.859 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -20.207 3.860 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.003 4.003 10 C -0.098 4.098 11 C -0.103 4.103 12 C -0.094 4.094 13 C -0.207 4.207 14 C 0.076 3.924 15 O -0.203 6.203 16 C -0.086 4.086 17 C -0.210 4.210 18 C -0.200 4.200 19 C -0.107 4.107 20 Cl -0.037 7.037 21 C -0.101 4.101 22 H 0.071 0.929 23 H 0.006 0.994 24 H 0.012 0.988 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.163 0.837 28 H 0.186 0.814 29 H 0.158 0.842 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.424 -20.292 3.555 20.605 hybrid contribution 0.008 1.098 -0.348 1.152 sum -0.416 -19.193 3.207 19.464 Atomic orbital electron populations 1.70118 1.07869 1.27648 1.51806 1.25981 0.95709 1.03371 0.94793 0.85404 0.79214 0.78808 0.77653 1.18334 1.20676 1.20412 1.21745 0.93714 0.92132 1.50291 0.91741 1.18955 0.94077 0.92367 0.94902 1.20525 0.97149 0.89907 1.02239 1.20112 1.00395 0.96923 0.92836 1.21218 0.95751 0.94027 0.98392 1.21415 1.04041 0.97866 0.97364 1.18621 0.94136 0.86909 0.92694 1.86049 1.69761 1.32659 1.31858 1.23501 1.07023 0.91954 0.86104 1.23554 0.98850 0.93728 1.04880 1.23476 0.91616 1.00024 1.04922 1.20221 1.07414 0.97320 0.85723 1.98325 1.92226 1.81871 1.31272 1.20888 0.97076 0.92668 0.99418 0.92858 0.99413 0.98806 0.90863 0.91734 0.83652 0.81415 0.84162 0.88641 0.85412 0.85244 0.88605 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.78 4.96 29.85 0.15 1.93 16 10 C -0.06 -2.45 5.28 29.85 0.16 -2.29 16 11 C -0.10 -3.62 5.13 -19.86 -0.10 -3.72 16 12 C -0.08 -2.29 9.69 22.26 0.22 -2.08 16 13 C -0.19 -4.97 9.19 22.36 0.21 -4.76 16 14 C 0.12 3.62 6.67 22.52 0.15 3.77 16 15 O -0.29 -7.80 9.85 -92.67 -0.91 -8.71 16 16 C -0.03 -0.56 6.21 30.59 0.19 -0.37 16 17 C -0.17 -2.42 10.48 30.62 0.32 -2.10 16 18 C -0.16 -2.33 10.48 30.62 0.32 -2.01 16 19 C -0.08 -2.58 6.33 22.41 0.14 -2.44 16 20 Cl -0.07 -1.98 28.50 -2.72 -0.08 -2.06 16 21 C -0.08 -2.82 9.48 22.27 0.21 -2.61 16 22 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 23 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.07 2.74 8.09 -2.39 -0.02 2.72 16 26 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 27 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 28 H 0.17 3.14 5.52 -2.91 -0.02 3.12 16 29 H 0.14 2.09 5.33 -2.39 -0.01 2.08 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -66.29 309.01 5.07 -61.22 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.10 Total: 6.73 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 2.66 Total: -46.43 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.75 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.91 Total: -8.71 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -66.29 5.07 -61.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.919 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds