Wall clock time and date at job start Mon Mar 30 2020 07:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35915 * 117.00066 * 2 1 4 4 C 1.38739 * 120.04414 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.96224 * 179.97438 * 4 3 2 6 6 C 1.38394 * 120.04049 * 359.72652 * 5 4 3 7 7 Cl 1.73602 * 119.96031 * 180.29248 * 6 5 4 8 8 C 1.38341 * 120.08278 * 0.55151 * 6 5 4 9 9 C 1.50702 * 119.98135 * 179.72548 * 8 6 5 10 10 H 1.08999 * 109.46863 * 359.71956 * 9 8 6 11 11 C 1.50690 * 109.47409 * 119.72119 * 9 8 6 12 12 H 1.08004 * 120.00130 * 64.83924 * 11 9 8 13 13 C 1.37870 * 120.00466 * 244.83772 * 11 9 8 14 14 N 1.31514 * 120.00360 * 184.70646 * 13 11 9 15 15 Si 1.86801 * 119.99807 * 4.70709 * 13 11 9 16 16 H 1.48501 * 109.47268 * 84.56690 * 15 13 11 17 17 H 1.48505 * 109.47250 * 204.56964 * 15 13 11 18 18 H 1.48500 * 109.46902 * 324.56571 * 15 13 11 19 19 C 1.53006 * 109.47190 * 239.72522 * 9 8 6 20 20 C 1.52998 * 117.49958 * 123.99767 * 19 9 8 21 21 C 1.53005 * 117.49661 * 55.33883 * 19 9 8 22 22 C 1.38165 * 120.04175 * 359.44997 * 8 6 5 23 23 H 1.09004 * 109.46882 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47030 * 300.00141 * 1 2 3 25 25 H 1.08994 * 109.46770 * 60.00562 * 1 2 3 26 26 H 1.08005 * 120.02219 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.98457 * 180.02562 * 5 4 3 28 28 H 0.97002 * 120.00238 * 179.97438 * 14 13 11 29 29 H 1.08997 * 115.54711 * 269.67750 * 19 9 8 30 30 H 1.09005 * 117.49949 * 0.02562 * 20 19 9 31 31 H 1.09003 * 117.49859 * 145.01903 * 20 19 9 32 32 H 1.08996 * 117.49725 * 214.97592 * 21 19 9 33 33 H 1.09003 * 117.49945 * 0.02562 * 21 19 9 34 34 H 1.08008 * 120.02131 * 180.25742 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9202 3.6049 0.0011 6 6 3.3023 3.6763 0.0068 7 17 4.0905 5.2231 0.0151 8 6 4.0566 2.5167 0.0005 9 6 5.5615 2.5971 0.0005 10 1 5.8694 3.6427 0.0008 11 6 6.1011 1.9141 1.2305 12 1 5.9628 0.8511 1.3625 13 6 6.7714 2.6460 2.1875 14 7 7.3226 2.0371 3.2146 15 14 6.8968 4.5028 2.0251 16 1 5.6762 5.1326 2.5896 17 1 8.0903 4.9850 2.7656 18 1 7.0237 4.8667 0.5910 19 6 6.1093 1.9047 -1.2492 20 6 7.0178 2.7227 -2.1691 21 6 5.5907 2.3835 -2.6067 22 6 3.4312 1.2847 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 0.2128 2.3199 0.0014 27 1 1.3330 4.5114 0.0019 28 1 7.7945 2.5520 3.8877 29 1 6.3282 0.8426 -1.1402 30 1 7.2257 3.7540 -1.8839 31 1 7.8344 2.1986 -2.6657 32 1 5.4691 1.6364 -3.3910 33 1 4.8596 3.1920 -2.6096 34 1 4.0204 0.3795 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:39 Heat of formation + Delta-G solvation = -16.645595 kcal Electronic energy + Delta-G solvation = -18220.714574 eV Core-core repulsion = 15337.757974 eV Total energy + Delta-G solvation = -2882.956600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17251 -39.34831 -37.82350 -37.00450 -34.92474 -32.97809 -31.19977 -29.40843 -27.95745 -25.19680 -23.82955 -23.14812 -22.47863 -20.68899 -19.20997 -18.64221 -17.39801 -17.15029 -16.76346 -16.55633 -15.86070 -15.37374 -14.94339 -14.85688 -14.61807 -14.20466 -14.03185 -13.49173 -13.20048 -13.06312 -12.68618 -12.58827 -12.41069 -12.27265 -12.10664 -11.81159 -11.57298 -11.44794 -11.32586 -10.85195 -10.69218 -10.52429 -9.66267 -8.99803 -8.31660 -6.33881 0.34922 0.43190 1.25760 1.32286 1.35870 1.43719 2.31713 2.41726 2.74220 2.97777 3.20225 3.83804 3.91954 4.05352 4.21601 4.27883 4.32943 4.44997 4.46400 4.54514 4.57876 4.76800 4.82791 4.90062 4.96988 5.09422 5.18233 5.23815 5.30345 5.34914 5.49725 5.57278 5.68747 5.77383 6.31449 6.49046 6.71829 7.30549 8.84328 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.008142 C = 0.008017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.762288 B = 3438.109889 C = 3491.576703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.129 3.871 4 C -0.208 4.208 5 C -0.065 4.065 6 C -0.103 4.103 7 Cl -0.089 7.089 8 C -0.001 4.001 9 C 0.058 3.942 10 H 0.065 0.935 11 C -0.493 4.493 12 H 0.039 0.961 13 C 0.023 3.977 14 N -0.943 5.943 15 Si 0.914 3.086 16 H -0.260 1.260 17 H -0.293 1.293 18 H -0.239 1.239 19 C -0.141 4.141 20 C -0.180 4.180 21 C -0.169 4.169 22 C -0.148 4.148 23 H 0.118 0.882 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.169 0.831 27 H 0.159 0.841 28 H 0.265 0.735 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.926 2.665 -10.197 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.084 3.916 4 C -0.227 4.227 5 C -0.083 4.083 6 C -0.130 4.130 7 Cl -0.060 7.060 8 C -0.002 4.002 9 C 0.039 3.961 10 H 0.083 0.917 11 C -0.531 4.531 12 H 0.057 0.943 13 C -0.174 4.174 14 N -0.583 5.583 15 Si 0.739 3.261 16 H -0.184 1.184 17 H -0.220 1.220 18 H -0.163 1.163 19 C -0.160 4.160 20 C -0.217 4.217 21 C -0.205 4.205 22 C -0.167 4.167 23 H 0.136 0.864 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.186 0.814 27 H 0.176 0.824 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.683 2.628 -10.032 17.169 hybrid contribution 0.520 0.696 0.663 1.093 sum -13.163 3.324 -9.369 16.495 Atomic orbital electron populations 1.23402 0.76157 1.05658 1.02582 1.86074 1.23831 1.26605 1.88515 1.19135 0.91738 0.85272 0.95492 1.21303 1.01320 0.90306 1.09722 1.21019 0.91101 0.99293 0.96925 1.20880 0.93521 0.85453 1.13140 1.98294 1.81327 1.29012 1.97366 1.20051 0.97588 0.90785 0.91756 1.18140 0.87312 0.97959 0.92688 0.91735 1.21031 1.33725 0.94969 1.03333 0.94268 1.25771 0.94531 1.02359 0.94789 1.70020 1.37306 1.37590 1.13392 0.86237 0.78179 0.81770 0.79940 1.18446 1.21988 1.16299 1.22353 1.04197 0.98767 0.90685 1.23001 0.94226 1.00483 1.04012 1.22933 0.96369 1.03456 0.97786 1.20069 0.91817 0.97538 1.07252 0.86368 0.91654 0.90940 0.81353 0.82356 0.92576 0.89608 0.90106 0.87693 0.87606 0.89612 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.94 10.50 -92.60 -0.97 -10.91 16 3 C 0.13 4.29 6.69 22.50 0.15 4.44 16 4 C -0.21 -5.63 9.04 22.36 0.20 -5.43 16 5 C -0.06 -1.91 9.82 22.28 0.22 -1.69 16 6 C -0.10 -3.85 6.31 22.33 0.14 -3.71 16 7 Cl -0.09 -3.26 25.30 -2.72 -0.07 -3.33 16 8 C 0.00 -0.02 4.21 -19.86 -0.08 -0.11 16 9 C 0.06 2.69 1.98 -12.29 -0.02 2.67 16 10 H 0.06 3.03 2.39 -2.39 -0.01 3.03 16 11 C -0.49 -28.08 8.44 25.60 0.22 -27.86 16 12 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 13 C 0.02 1.37 5.47 84.65 0.46 1.83 16 14 N -0.94 -59.52 13.96 21.44 0.30 -59.22 16 15 Si 0.91 45.28 25.69 68.60 1.76 47.04 16 16 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 18 H -0.24 -10.98 6.21 99.48 0.62 -10.36 16 19 C -0.14 -5.81 4.86 -10.79 -0.05 -5.86 16 20 C -0.18 -6.33 10.18 30.62 0.31 -6.02 16 21 C -0.17 -5.56 9.78 30.62 0.30 -5.26 16 22 C -0.15 -5.98 8.87 22.36 0.20 -5.78 16 23 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 25 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 26 H 0.17 3.08 6.30 -2.91 -0.02 3.06 16 27 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.09 3.68 8.07 -2.39 -0.02 3.66 16 30 H 0.08 2.92 8.03 -2.38 -0.02 2.90 16 31 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.09 2.84 8.02 -2.39 -0.02 2.82 16 34 H 0.11 4.96 8.05 -2.91 -0.02 4.94 16 Total: -1.00 -67.90 296.36 5.19 -62.71 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.01 Total: 15.09 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 3.15 Total: -51.38 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.30 Total: -59.22 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.97 Total: -10.91 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.76 Total: 47.04 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.07 Total: -3.33 kcal Total: -67.90 5.19 -62.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.063 kcal (2) G-P(sol) polarization free energy of solvation -67.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds