Wall clock time and date at job start Mon Mar 30 2020 07:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38293 * 119.97363 * 2 1 4 4 C 1.38242 * 120.11634 * 179.77001 * 3 2 1 5 5 C 1.38199 * 120.07421 * 0.50831 * 4 3 2 6 6 C 1.50696 * 120.01867 * 179.77009 * 5 4 3 7 7 H 1.08993 * 109.47283 * 179.72020 * 6 5 4 8 8 C 1.50704 * 109.47213 * 59.72184 * 6 5 4 9 9 H 1.08004 * 119.99966 * 265.29140 * 8 6 5 10 10 C 1.37874 * 120.00299 * 85.28977 * 8 6 5 11 11 N 1.31520 * 119.99649 * 5.13599 * 10 8 6 12 12 Si 1.86798 * 120.00379 * 185.13630 * 10 8 6 13 13 H 1.48501 * 109.46816 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47315 * 120.00204 * 12 10 8 15 15 H 1.48499 * 109.46952 * 240.00278 * 12 10 8 16 16 C 1.53006 * 109.47095 * 299.72331 * 6 5 4 17 17 C 1.52996 * 117.49575 * 254.11874 * 16 6 5 18 18 C 1.53005 * 117.49408 * 185.46134 * 16 6 5 19 19 C 1.38665 * 119.95621 * 359.49224 * 5 4 3 20 20 O 1.35928 * 120.05437 * 180.27719 * 19 5 4 21 21 C 1.38212 * 119.98449 * 180.02562 * 2 1 3 22 22 Cl 1.73601 * 120.03402 * 0.02562 * 21 2 1 23 23 H 1.08992 * 109.47126 * 269.97542 * 1 2 3 24 24 H 1.09000 * 109.47650 * 29.98263 * 1 2 3 25 25 H 1.09004 * 109.46729 * 149.97727 * 1 2 3 26 26 H 1.07994 * 119.94374 * 0.03871 * 3 2 1 27 27 H 1.07995 * 119.95994 * 180.27693 * 4 3 2 28 28 H 0.96999 * 119.99803 * 179.97438 * 11 10 8 29 29 H 1.08991 * 115.55196 * 39.79147 * 16 6 5 30 30 H 1.09001 * 117.50017 * 0.02562 * 17 16 6 31 31 H 1.08999 * 117.49736 * 145.01667 * 17 16 6 32 32 H 1.08997 * 117.49360 * 214.97540 * 18 16 6 33 33 H 1.08991 * 117.50495 * 0.02562 * 18 16 6 34 34 H 0.96703 * 113.99642 * 90.00551 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 0.0048 5 6 4.2759 0.0072 -0.0010 6 6 5.7828 0.0125 -0.0010 7 1 6.1498 -1.0138 -0.0010 8 6 6.2827 0.7247 1.2295 9 1 6.5315 1.7746 1.1821 10 6 6.4225 0.0360 2.4157 11 7 6.2169 -1.2626 2.4502 12 14 6.9038 0.9472 3.9737 13 1 7.0763 2.3904 3.6697 14 1 5.8383 0.7796 4.9944 15 1 8.1801 0.3957 4.4954 16 6 6.2903 0.7356 -1.2503 17 6 6.8789 -0.1217 -2.3725 18 6 7.7996 0.7368 -1.5016 19 6 3.5862 -1.1957 -0.0010 20 8 4.2684 -2.3715 -0.0010 21 6 2.1977 -1.1971 -0.0005 22 17 1.3302 -2.7008 -0.0019 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6566 2.1324 0.0006 27 1 4.1173 2.1384 0.0093 28 1 6.3156 -1.7472 3.2847 29 1 5.7316 1.6262 -1.5375 30 1 6.9042 -1.2009 -2.2210 31 1 6.7076 0.2051 -3.3981 32 1 8.2336 1.6281 -1.9546 33 1 8.4309 0.2222 -0.7773 34 1 4.4656 -2.7117 0.8825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260063495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:35 Heat of formation + Delta-G solvation = -18.701421 kcal Electronic energy + Delta-G solvation = -18259.522247 eV Core-core repulsion = 15376.476499 eV Total energy + Delta-G solvation = -2883.045748 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.32202 -36.76649 -36.01117 -35.75960 -33.16897 -31.83352 -29.01421 -28.71783 -25.51542 -23.28482 -22.03480 -21.50488 -20.74419 -19.04439 -17.14306 -16.51000 -15.70798 -15.35602 -14.74728 -14.46853 -14.18355 -13.62619 -13.22616 -13.10277 -12.48057 -12.44153 -12.09247 -11.71700 -11.38478 -11.15697 -11.08658 -10.83850 -10.82867 -10.74189 -10.51861 -10.40730 -9.96661 -9.73381 -9.36117 -9.28982 -8.77000 -8.52498 -7.88171 -7.54688 -6.17356 -4.18033 1.87145 2.00878 2.73007 3.22606 3.31733 3.34708 4.23797 4.36197 4.77528 5.01480 5.17344 5.31547 5.59902 5.63235 5.74068 5.86241 5.87100 5.89309 6.00813 6.18079 6.25625 6.33818 6.41154 6.45234 6.70495 6.80755 6.91464 6.93935 6.99508 7.18486 7.33743 7.55981 7.75080 7.90016 8.25126 8.56443 8.89514 9.45673 10.92027 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.007939 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.030414 B = 3526.106829 C = 4032.807813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.129 4.129 4 C -0.096 4.096 5 C -0.033 4.033 6 C 0.094 3.906 7 H 0.075 0.925 8 C -0.499 4.499 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.119 4.119 17 C -0.198 4.198 18 C -0.171 4.171 19 C 0.124 3.876 20 O -0.487 6.487 21 C -0.067 4.067 22 Cl -0.085 7.085 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.262 0.738 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 1.634 -4.428 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.148 4.148 4 C -0.114 4.114 5 C -0.034 4.034 6 C 0.076 3.924 7 H 0.093 0.907 8 C -0.537 4.537 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.527 5.527 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.137 4.137 17 C -0.235 4.235 18 C -0.208 4.208 19 C 0.078 3.922 20 O -0.298 6.298 21 C -0.094 4.094 22 Cl -0.056 7.056 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.850 1.385 -4.903 8.537 hybrid contribution 0.181 0.260 1.587 1.618 sum -6.669 1.645 -3.317 7.628 Atomic orbital electron populations 1.20716 0.91308 1.02422 1.02001 1.19349 0.95749 0.91283 1.03811 1.20828 0.94412 0.96194 1.03322 1.20960 0.92923 0.98488 0.99018 1.20992 0.99519 0.90290 0.92626 1.17590 0.85326 0.98934 0.90557 0.90738 1.21012 1.43040 0.96315 0.93285 0.92241 1.24947 0.94809 0.94767 0.99023 1.69843 1.49606 1.06563 1.26735 0.86546 0.78065 0.80202 0.83306 1.19665 1.21033 1.21024 1.22397 0.94857 0.99656 0.96791 1.22986 1.06972 0.98285 0.95224 1.22729 0.94368 1.01090 1.02638 1.18050 0.86836 0.86828 1.00475 1.84629 1.75720 1.35209 1.34227 1.21260 0.91619 0.86217 1.10318 1.98287 1.76736 1.33442 1.97161 0.91618 0.91882 0.91558 0.86361 0.85789 0.92847 0.89866 0.89291 0.90566 0.90544 0.88694 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.61 36.01 0.35 -1.13 16 2 C -0.10 -1.76 5.88 -104.61 -0.62 -2.38 16 3 C -0.13 -2.23 9.70 -39.56 -0.38 -2.62 16 4 C -0.10 -1.88 8.66 -39.59 -0.34 -2.22 16 5 C -0.03 -0.72 4.78 -104.48 -0.50 -1.22 16 6 C 0.09 2.18 2.03 -92.92 -0.19 2.00 16 7 H 0.07 1.93 6.18 -51.93 -0.32 1.61 16 8 C -0.50 -12.53 7.71 -34.44 -0.27 -12.79 16 9 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 10 C 0.07 1.72 5.45 -17.82 -0.10 1.62 16 11 N -0.89 -23.26 12.92 55.43 0.72 -22.54 16 12 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.12 -2.41 4.93 -90.62 -0.45 -2.86 16 17 C -0.20 -3.64 10.18 -26.69 -0.27 -3.91 16 18 C -0.17 -3.22 10.02 -26.69 -0.27 -3.48 16 19 C 0.12 2.67 6.67 -39.20 -0.26 2.41 16 20 O -0.49 -10.56 11.73 -19.51 -0.23 -10.79 16 21 C -0.07 -1.30 6.33 -39.37 -0.25 -1.55 16 22 Cl -0.08 -1.46 26.84 -51.86 -1.39 -2.86 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 25 H 0.07 0.89 6.90 -51.93 -0.36 0.53 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.12 2.32 7.81 -52.49 -0.41 1.91 16 28 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 30 H 0.09 1.71 8.08 -51.93 -0.42 1.29 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 34 H 0.40 8.37 9.06 45.56 0.41 8.78 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -26.16 304.62 -8.44 -34.60 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -3.56 Total: 9.80 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -3.54 Total: -28.14 kcal Atomic # 7 Polarization: -23.26 SS G_CDS: 0.72 Total: -22.54 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.23 Total: -10.79 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.39 Total: -2.86 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.16 -8.44 -34.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.897 kcal (2) G-P(sol) polarization free energy of solvation -26.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds