Wall clock time and date at job start Mon Mar 30 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38293 * 119.97363 * 2 1 4 4 C 1.38242 * 120.11634 * 179.77001 * 3 2 1 5 5 C 1.38199 * 120.07421 * 0.50831 * 4 3 2 6 6 C 1.50696 * 120.01867 * 179.77009 * 5 4 3 7 7 H 1.08993 * 109.47283 * 179.72020 * 6 5 4 8 8 C 1.50704 * 109.47213 * 59.72184 * 6 5 4 9 9 H 1.08004 * 119.99966 * 265.29140 * 8 6 5 10 10 C 1.37874 * 120.00299 * 85.28977 * 8 6 5 11 11 N 1.31520 * 119.99649 * 5.13599 * 10 8 6 12 12 Si 1.86798 * 120.00379 * 185.13630 * 10 8 6 13 13 H 1.48501 * 109.46816 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47315 * 120.00204 * 12 10 8 15 15 H 1.48499 * 109.46952 * 240.00278 * 12 10 8 16 16 C 1.53006 * 109.47095 * 299.72331 * 6 5 4 17 17 C 1.52996 * 117.49575 * 254.11874 * 16 6 5 18 18 C 1.53005 * 117.49408 * 185.46134 * 16 6 5 19 19 C 1.38665 * 119.95621 * 359.49224 * 5 4 3 20 20 O 1.35928 * 120.05437 * 180.27719 * 19 5 4 21 21 C 1.38212 * 119.98449 * 180.02562 * 2 1 3 22 22 Cl 1.73601 * 120.03402 * 0.02562 * 21 2 1 23 23 H 1.08992 * 109.47126 * 269.97542 * 1 2 3 24 24 H 1.09000 * 109.47650 * 29.98263 * 1 2 3 25 25 H 1.09004 * 109.46729 * 149.97727 * 1 2 3 26 26 H 1.07994 * 119.94374 * 0.03871 * 3 2 1 27 27 H 1.07995 * 119.95994 * 180.27693 * 4 3 2 28 28 H 0.96999 * 119.99803 * 179.97438 * 11 10 8 29 29 H 1.08991 * 115.55196 * 39.79147 * 16 6 5 30 30 H 1.09001 * 117.50017 * 0.02562 * 17 16 6 31 31 H 1.08999 * 117.49736 * 145.01667 * 17 16 6 32 32 H 1.08997 * 117.49360 * 214.97540 * 18 16 6 33 33 H 1.08991 * 117.50495 * 0.02562 * 18 16 6 34 34 H 0.96703 * 113.99642 * 90.00551 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 0.0048 5 6 4.2759 0.0072 -0.0010 6 6 5.7828 0.0125 -0.0010 7 1 6.1498 -1.0138 -0.0010 8 6 6.2827 0.7247 1.2295 9 1 6.5315 1.7746 1.1821 10 6 6.4225 0.0360 2.4157 11 7 6.2169 -1.2626 2.4502 12 14 6.9038 0.9472 3.9737 13 1 7.0763 2.3904 3.6697 14 1 5.8383 0.7796 4.9944 15 1 8.1801 0.3957 4.4954 16 6 6.2903 0.7356 -1.2503 17 6 6.8789 -0.1217 -2.3725 18 6 7.7996 0.7368 -1.5016 19 6 3.5862 -1.1957 -0.0010 20 8 4.2684 -2.3715 -0.0010 21 6 2.1977 -1.1971 -0.0005 22 17 1.3302 -2.7008 -0.0019 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6566 2.1324 0.0006 27 1 4.1173 2.1384 0.0093 28 1 6.3156 -1.7472 3.2847 29 1 5.7316 1.6262 -1.5375 30 1 6.9042 -1.2009 -2.2210 31 1 6.7076 0.2051 -3.3981 32 1 8.2336 1.6281 -1.9546 33 1 8.4309 0.2222 -0.7773 34 1 4.4656 -2.7117 0.8825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:33 Heat of formation + Delta-G solvation = -31.719973 kcal Electronic energy + Delta-G solvation = -18260.086774 eV Core-core repulsion = 15376.476499 eV Total energy + Delta-G solvation = -2883.610274 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.84435 -38.31770 -37.57910 -37.19319 -34.93014 -33.41308 -30.51317 -30.27433 -27.11231 -24.96784 -23.53002 -23.01438 -22.23546 -20.68358 -18.73604 -18.36076 -17.19276 -16.89837 -16.59270 -16.00218 -15.70126 -15.06261 -14.73360 -14.49555 -14.19992 -13.89113 -13.40115 -13.18035 -13.02955 -12.90853 -12.52571 -12.46649 -12.37314 -12.24057 -12.16790 -11.84395 -11.63978 -11.29836 -11.08128 -10.95354 -10.45291 -10.38129 -9.36646 -9.07774 -8.09966 -6.15746 0.36227 0.53435 1.27866 1.39956 1.44325 1.52720 2.43082 2.77471 3.18865 3.27635 3.52685 3.98888 4.14594 4.23071 4.34535 4.39274 4.45083 4.63815 4.78919 4.85024 4.85395 4.88417 4.92097 5.08085 5.22234 5.32286 5.36323 5.45507 5.50896 5.63520 5.72007 5.81233 6.04164 6.11125 6.38693 6.88823 6.98020 7.49070 8.97822 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.007939 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.030414 B = 3526.106829 C = 4032.807813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.059 4.059 6 C 0.100 3.900 7 H 0.036 0.964 8 C -0.503 4.503 9 H 0.055 0.945 10 C 0.022 3.978 11 N -0.911 5.911 12 Si 0.943 3.057 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.286 1.286 16 C -0.137 4.137 17 C -0.185 4.185 18 C -0.166 4.166 19 C 0.095 3.905 20 O -0.495 6.495 21 C -0.080 4.080 22 Cl -0.071 7.071 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.158 0.842 27 H 0.130 0.870 28 H 0.260 0.740 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 3.379 -4.983 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.061 4.061 6 C 0.082 3.918 7 H 0.054 0.946 8 C -0.541 4.541 9 H 0.073 0.927 10 C -0.178 4.178 11 N -0.551 5.551 12 Si 0.770 3.230 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.155 4.155 17 C -0.222 4.222 18 C -0.203 4.203 19 C 0.050 3.950 20 O -0.306 6.306 21 C -0.107 4.107 22 Cl -0.042 7.042 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.176 0.824 27 H 0.148 0.852 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.455 3.138 -5.470 10.548 hybrid contribution 0.615 -0.300 1.712 1.844 sum -7.840 2.838 -3.759 9.146 Atomic orbital electron populations 1.20803 0.88261 1.03968 1.03191 1.19872 0.97928 0.90451 1.01588 1.21236 0.93510 0.97819 1.01187 1.21118 0.94250 0.97756 0.99205 1.20935 0.98842 0.91541 0.94741 1.17345 0.86608 0.96692 0.91192 0.94611 1.21224 1.42613 0.96056 0.94212 0.92700 1.25569 0.95403 0.95425 1.01362 1.69959 1.50733 1.07437 1.26931 0.85732 0.77387 0.79456 0.80437 1.19040 1.21303 1.21218 1.22376 0.95952 1.00508 0.96676 1.22985 1.05802 0.97221 0.96201 1.22744 0.93315 1.01998 1.02252 1.18302 0.87988 0.86513 1.02241 1.84615 1.76220 1.35758 1.34021 1.21423 0.91141 0.87782 1.10339 1.98283 1.76087 1.32722 1.97090 0.90422 0.89063 0.91387 0.82410 0.85218 0.93134 0.88564 0.90985 0.87658 0.87673 0.90927 0.75152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.61 71.24 0.68 -1.80 16 2 C -0.10 -3.15 5.88 -19.86 -0.12 -3.26 16 3 C -0.12 -3.77 9.70 22.28 0.22 -3.56 16 4 C -0.11 -4.00 8.66 22.26 0.19 -3.80 16 5 C -0.06 -2.62 4.78 -19.77 -0.09 -2.72 16 6 C 0.10 4.76 2.03 -12.28 -0.02 4.73 16 7 H 0.04 1.95 6.18 -2.39 -0.01 1.93 16 8 C -0.50 -25.68 7.71 25.60 0.20 -25.48 16 9 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.02 1.14 5.45 84.65 0.46 1.60 16 11 N -0.91 -49.26 12.92 21.45 0.28 -48.98 16 12 Si 0.94 42.16 29.54 68.60 2.03 44.19 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 C -0.14 -5.54 4.93 -10.79 -0.05 -5.59 16 17 C -0.19 -6.72 10.18 30.62 0.31 -6.40 16 18 C -0.17 -6.15 10.02 30.62 0.31 -5.84 16 19 C 0.10 4.17 6.67 22.52 0.15 4.32 16 20 O -0.50 -22.49 11.73 -92.74 -1.09 -23.58 16 21 C -0.08 -3.03 6.33 22.41 0.14 -2.88 16 22 Cl -0.07 -2.37 26.84 -2.72 -0.07 -2.44 16 23 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 25 H 0.07 1.59 6.90 -2.38 -0.02 1.58 16 26 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.13 4.67 7.81 -2.91 -0.02 4.64 16 28 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.10 3.60 7.44 -2.39 -0.02 3.59 16 30 H 0.07 2.84 8.08 -2.39 -0.02 2.82 16 31 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 2.99 8.14 -2.39 -0.02 2.98 16 34 H 0.39 17.64 9.06 -74.06 -0.67 16.97 16 Total: -1.00 -57.06 304.62 3.96 -53.10 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.44 Total: 28.40 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 2.37 Total: -50.69 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.28 Total: -48.98 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -1.09 Total: -23.58 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.07 Total: -2.44 kcal Total: -57.06 3.96 -53.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.379 kcal (2) G-P(sol) polarization free energy of solvation -57.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds