Wall clock time and date at job start Mon Mar 30 2020 07:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99833 * 2 1 4 4 C 1.38759 * 120.05455 * 0.30113 * 3 2 1 5 5 C 1.38123 * 119.97370 * 180.29375 * 4 3 2 6 6 C 1.38264 * 120.07165 * 359.68168 * 5 4 3 7 7 C 1.38368 * 120.09174 * 0.02562 * 6 5 4 8 8 Cl 1.73605 * 119.98436 * 180.02562 * 7 6 5 9 9 C 1.38275 * 120.03178 * 0.02562 * 7 6 5 10 10 C 1.50700 * 120.03430 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47024 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47321 * 299.99813 * 10 9 7 13 13 H 1.08004 * 119.99568 * 0.02562 * 12 10 9 14 14 C 1.37872 * 120.00273 * 179.97438 * 12 10 9 15 15 N 1.31521 * 120.00045 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00034 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46939 * 90.00585 * 16 14 12 18 18 H 1.48498 * 109.47147 * 210.00178 * 16 14 12 19 19 H 1.48495 * 109.47163 * 330.00137 * 16 14 12 20 20 C 1.53006 * 109.47152 * 59.99988 * 10 9 7 21 21 C 1.53000 * 117.49988 * 128.75099 * 20 10 9 22 22 C 1.52993 * 117.50097 * 60.08547 * 20 10 9 23 23 H 1.08999 * 109.47354 * 59.99870 * 1 2 3 24 24 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46710 * 300.00031 * 1 2 3 26 26 H 1.08008 * 120.01097 * 359.97438 * 4 3 2 27 27 H 1.08008 * 119.96738 * 179.69929 * 5 4 3 28 28 H 1.07998 * 119.95905 * 180.02562 * 6 5 4 29 29 H 0.97001 * 120.00056 * 179.97438 * 15 14 12 30 30 H 1.08998 * 115.54561 * 274.41439 * 20 10 9 31 31 H 1.09002 * 117.50034 * 359.97438 * 21 20 10 32 32 H 1.08994 * 117.49821 * 145.02184 * 21 20 10 33 33 H 1.08998 * 117.50372 * 214.98185 * 22 20 10 34 34 H 1.09006 * 117.50059 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0063 5 6 1.9200 3.6051 0.0002 6 6 3.3008 3.6773 -0.0056 7 6 4.0561 2.5180 -0.0058 8 17 5.7896 2.6119 -0.0124 9 6 3.4309 1.2847 -0.0007 10 6 4.2535 0.0220 -0.0004 11 1 3.5907 -0.8433 0.0044 12 6 5.1188 -0.0142 -1.2336 13 1 5.0776 0.7964 -1.9462 14 6 5.9640 -1.0815 -1.4517 15 7 6.0146 -2.0683 -0.5837 16 14 7.0361 -1.1266 -2.9808 17 1 8.3384 -0.4743 -2.6915 18 1 7.2675 -2.5376 -3.3816 19 1 6.3547 -0.4039 -4.0846 20 6 5.1403 -0.0086 1.2461 21 6 5.1013 -1.2706 2.1101 22 6 4.4451 0.0194 2.6087 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2126 2.3200 0.0108 27 1 1.3325 4.5114 0.0002 28 1 3.7905 4.6399 -0.0100 29 1 6.6089 -2.8193 -0.7374 30 1 6.0943 0.5111 1.1571 31 1 4.4435 -2.0791 1.7908 32 1 6.0295 -1.5810 2.5899 33 1 4.9418 0.5571 3.4162 34 1 3.3558 0.0600 2.6172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:44 Heat of formation + Delta-G solvation = -9.230010 kcal Electronic energy + Delta-G solvation = -18576.969444 eV Core-core repulsion = 15694.334407 eV Total energy + Delta-G solvation = -2882.635036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.14781 -38.75768 -37.79793 -36.81721 -34.60424 -32.81640 -30.77061 -29.07767 -27.87879 -25.33520 -23.06128 -22.99488 -22.59439 -20.79982 -18.85281 -18.48817 -17.13241 -16.70317 -16.52076 -16.27465 -15.82499 -15.59703 -14.96356 -14.56488 -14.41422 -13.91888 -13.59394 -13.08437 -12.86439 -12.67634 -12.58773 -12.56342 -12.19273 -12.10538 -12.01730 -11.69028 -11.61372 -11.42100 -11.27479 -10.56106 -10.37723 -10.08445 -9.35259 -8.95424 -7.94042 -6.01961 0.38939 0.58890 1.41125 1.43135 1.51135 1.51537 2.49924 2.63125 2.87269 3.32073 3.42554 4.00244 4.13402 4.27942 4.34546 4.37864 4.46305 4.52458 4.59497 4.64685 4.69387 4.75963 4.90962 5.14734 5.20556 5.28498 5.41661 5.49524 5.52990 5.59086 5.72780 5.83986 5.89057 6.12687 6.45814 6.64203 7.00620 7.59640 9.10479 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.009035 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.928691 B = 3098.411865 C = 3411.372929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.110 3.890 4 C -0.204 4.204 5 C -0.081 4.081 6 C -0.158 4.158 7 C -0.007 4.007 8 Cl -0.067 7.067 9 C -0.094 4.094 10 C 0.121 3.879 11 H 0.009 0.991 12 C -0.501 4.501 13 H 0.045 0.955 14 C 0.025 3.975 15 N -0.899 5.899 16 Si 0.933 3.067 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.092 4.092 21 C -0.143 4.143 22 C -0.195 4.195 23 H 0.066 0.934 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.148 0.852 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 9.726 3.217 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.064 3.936 4 C -0.222 4.222 5 C -0.099 4.099 6 C -0.176 4.176 7 C -0.033 4.033 8 Cl -0.038 7.038 9 C -0.095 4.095 10 C 0.102 3.898 11 H 0.027 0.973 12 C -0.539 4.539 13 H 0.064 0.936 14 C -0.175 4.175 15 N -0.537 5.537 16 Si 0.760 3.240 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.110 4.110 21 C -0.180 4.180 22 C -0.232 4.232 23 H 0.085 0.915 24 H 0.126 0.874 25 H 0.089 0.911 26 H 0.176 0.824 27 H 0.187 0.813 28 H 0.166 0.834 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.756 9.356 3.243 13.901 hybrid contribution 0.928 -0.553 -0.878 1.392 sum -8.828 8.803 2.365 12.690 Atomic orbital electron populations 1.23320 0.76820 1.05070 1.02338 1.86171 1.23158 1.27100 1.88717 1.18927 0.91231 0.85390 0.98034 1.21544 1.01165 0.91438 1.08066 1.21139 0.93122 0.98118 0.97479 1.21212 0.94588 0.96813 1.05020 1.20660 0.84894 0.94070 1.03716 1.98326 1.10672 1.98240 1.96594 1.19672 0.91746 0.96276 1.01796 1.17077 0.91217 0.88912 0.92553 0.97332 1.21100 1.22331 1.04754 1.05722 0.93629 1.25458 0.98135 0.95641 0.98253 1.70147 1.38410 1.09196 1.35981 0.85948 0.79753 0.76847 0.81466 1.20632 1.21219 1.19871 1.22131 0.99199 0.99811 0.89888 1.22318 1.00481 0.91302 1.03925 1.22986 0.98688 1.02491 0.99048 0.91524 0.87359 0.91130 0.82387 0.81328 0.83426 0.93648 0.90446 0.91761 0.90897 0.88962 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.34 -12.79 9.26 -92.41 -0.86 -13.65 16 3 C 0.11 4.16 6.66 22.50 0.15 4.31 16 4 C -0.20 -5.72 9.04 22.37 0.20 -5.51 16 5 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 6 C -0.16 -4.80 9.83 22.31 0.22 -4.58 16 7 C -0.01 -0.26 5.93 22.31 0.13 -0.13 16 8 Cl -0.07 -2.76 23.99 -2.72 -0.07 -2.83 16 9 C -0.09 -4.11 4.40 -19.75 -0.09 -4.20 16 10 C 0.12 6.22 1.97 -12.28 -0.02 6.20 16 11 H 0.01 0.50 6.75 -2.39 -0.02 0.49 16 12 C -0.50 -27.85 6.81 25.60 0.17 -27.67 16 13 H 0.05 2.57 7.27 -2.91 -0.02 2.55 16 14 C 0.02 1.39 5.30 84.65 0.45 1.84 16 15 N -0.90 -51.97 11.43 21.45 0.25 -51.73 16 16 Si 0.93 45.10 29.54 68.60 2.03 47.13 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.09 -4.46 3.16 -10.79 -0.03 -4.49 16 21 C -0.14 -6.70 9.04 30.62 0.28 -6.43 16 22 C -0.20 -8.14 9.87 30.62 0.30 -7.84 16 23 H 0.07 1.34 7.67 -2.39 -0.02 1.32 16 24 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 1.34 7.65 -2.38 -0.02 1.33 16 26 H 0.16 3.21 6.30 -2.91 -0.02 3.19 16 27 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.08 3.97 6.43 -2.39 -0.02 3.96 16 31 H 0.06 3.24 8.05 -2.39 -0.02 3.22 16 32 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -65.50 294.52 5.55 -59.96 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.10 Total: 9.87 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 3.10 Total: -48.75 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.25 Total: -51.73 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.86 Total: -13.65 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.07 Total: -2.83 kcal Total: -65.50 5.55 -59.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.727 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds