Wall clock time and date at job start Mon Mar 30 2020 07:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.01148 * 2 1 4 4 C 1.38229 * 120.06195 * 180.02562 * 3 2 1 5 5 C 1.38412 * 120.09832 * 0.27931 * 4 3 2 6 6 Cl 1.73605 * 119.98032 * 179.69791 * 5 4 3 7 7 C 1.38232 * 120.03037 * 359.44960 * 5 4 3 8 8 C 1.50702 * 120.03671 * 180.25316 * 7 5 4 9 9 H 1.09001 * 109.47261 * 180.29388 * 8 7 5 10 10 C 1.50696 * 109.47031 * 300.29604 * 8 7 5 11 11 H 1.08009 * 120.00037 * 359.97438 * 10 8 7 12 12 C 1.37873 * 120.00185 * 179.97438 * 10 8 7 13 13 N 1.31510 * 119.99952 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00059 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47088 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47143 * 120.00080 * 14 12 10 17 17 H 1.48501 * 109.46986 * 239.99881 * 14 12 10 18 18 C 1.53000 * 109.47022 * 60.29392 * 8 7 5 19 19 C 1.53002 * 117.50153 * 128.62370 * 18 8 7 20 20 C 1.52999 * 117.50024 * 59.99956 * 18 8 7 21 21 C 1.38719 * 120.01054 * 180.02562 * 2 1 3 22 22 O 1.35893 * 120.05216 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.47478 * 89.99726 * 1 2 3 24 24 H 1.09005 * 109.47289 * 209.99677 * 1 2 3 25 25 H 1.09001 * 109.46991 * 329.99566 * 1 2 3 26 26 H 1.07993 * 119.96697 * 0.04583 * 3 2 1 27 27 H 1.08002 * 119.94555 * 179.97438 * 4 3 2 28 28 H 0.97003 * 120.00383 * 180.02562 * 13 12 10 29 29 H 1.09003 * 115.55104 * 274.33176 * 18 8 7 30 30 H 1.09004 * 117.49566 * 0.02562 * 19 18 8 31 31 H 1.08997 * 117.49926 * 145.01554 * 19 18 8 32 32 H 1.08997 * 117.50233 * 214.98169 * 20 18 8 33 33 H 1.08999 * 117.49984 * 359.97438 * 20 18 8 34 34 H 0.96702 * 114.00500 * 90.00167 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1965 0.0000 4 6 3.5804 1.1977 -0.0005 5 6 4.2756 0.0008 -0.0069 6 17 6.0116 0.0060 -0.0155 7 6 3.5882 -1.1985 -0.0013 8 6 4.3450 -2.5017 -0.0024 9 1 3.6388 -3.3320 -0.0027 10 6 5.2111 -2.5785 -1.2333 11 1 5.2130 -1.7651 -1.9439 12 6 6.0011 -3.6870 -1.4523 13 7 5.9992 -4.6772 -0.5868 14 14 7.0752 -3.7819 -2.9777 15 1 6.8979 -2.5486 -3.7854 16 1 8.4985 -3.9093 -2.5737 17 1 6.6826 -4.9636 -3.7868 18 6 5.2254 -2.5813 1.2464 19 6 5.1170 -3.8410 2.1081 20 6 4.5285 -2.5197 2.6071 21 6 2.2009 -1.2012 -0.0005 22 8 1.5227 -2.3788 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6578 2.1315 0.0007 27 1 4.1187 2.1340 -0.0010 28 1 6.5552 -5.4570 -0.7407 29 1 6.2056 -2.1122 1.1613 30 1 4.4187 -4.6131 1.7850 31 1 6.0260 -4.2009 2.5898 32 1 5.0504 -2.0104 3.4172 33 1 3.4430 -2.4220 2.6126 34 1 1.3260 -2.7195 -0.8839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:24 Heat of formation + Delta-G solvation = -9.284295 kcal Electronic energy + Delta-G solvation = -18543.523730 eV Core-core repulsion = 15660.886340 eV Total energy + Delta-G solvation = -2882.637390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.62772 -36.59803 -36.19621 -35.28375 -32.82669 -31.99412 -30.24702 -27.20847 -26.19681 -23.49281 -21.59356 -21.15807 -20.84520 -18.78742 -17.79458 -16.58661 -15.55773 -15.49603 -14.67711 -14.37468 -14.05139 -13.58799 -13.11254 -13.02036 -12.77485 -12.43469 -12.01868 -11.95787 -11.59629 -11.04583 -10.95657 -10.83290 -10.53565 -10.38912 -10.32915 -10.09387 -9.80685 -9.72367 -9.48330 -8.66955 -8.58785 -8.21574 -7.95117 -7.75904 -5.93696 -3.98103 1.62552 1.83911 3.01887 3.31023 3.40022 3.44228 4.02416 4.48027 4.79702 5.14390 5.16921 5.30011 5.40076 5.52159 5.67693 5.76744 5.92348 6.05070 6.12102 6.26462 6.29973 6.39922 6.57383 6.63038 6.69294 6.84615 6.95043 7.04887 7.22453 7.28597 7.34674 7.58133 7.83957 8.03351 8.19594 8.37271 9.00726 9.63406 11.12318 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.008408 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.449105 B = 3329.449117 C = 3499.697579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.015 4.015 6 Cl -0.055 7.055 7 C -0.042 4.042 8 C 0.107 3.893 9 H 0.048 0.952 10 C -0.503 4.503 11 H 0.058 0.942 12 C 0.070 3.930 13 N -0.874 5.874 14 Si 0.882 3.118 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.079 4.079 19 C -0.136 4.136 20 C -0.228 4.228 21 C 0.102 3.898 22 O -0.488 6.488 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.257 0.743 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 8.367 1.423 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.042 4.042 6 Cl -0.025 7.025 7 C -0.043 4.043 8 C 0.088 3.912 9 H 0.066 0.934 10 C -0.541 4.541 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.511 5.511 14 Si 0.710 3.290 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.098 4.098 19 C -0.173 4.173 20 C -0.265 4.265 21 C 0.057 3.943 22 O -0.298 6.298 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.659 8.235 2.069 10.790 hybrid contribution 0.893 -0.197 -1.303 1.592 sum -5.765 8.037 0.766 9.921 Atomic orbital electron populations 1.20619 0.91220 1.02644 1.01793 1.20157 0.96288 0.92714 1.02678 1.20573 0.93193 0.96885 1.03514 1.20961 0.94121 0.96676 1.02720 1.20576 0.85482 0.93669 1.04445 1.98340 1.09047 1.98628 1.96527 1.20800 0.92557 0.97298 0.93621 1.17499 0.92814 0.87664 0.93179 0.93397 1.20939 1.24692 1.03324 1.05187 0.92408 1.24858 0.96700 0.95738 0.96001 1.70038 1.39348 1.07103 1.34636 0.86687 0.80657 0.77885 0.83746 1.19792 1.21182 1.21241 1.22267 0.99282 0.99500 0.88736 1.22409 1.00796 0.90939 1.03191 1.23043 0.99185 1.04200 1.00093 1.17990 0.89025 0.84742 1.02496 1.84747 1.75734 1.36109 1.33172 0.91771 0.91082 0.92040 0.85969 0.85862 0.93318 0.89054 0.89698 0.91341 0.91297 0.90559 0.75892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.79 36.01 0.35 -0.95 16 2 C -0.12 -1.87 5.89 -104.47 -0.62 -2.48 16 3 C -0.12 -1.84 9.70 -39.61 -0.38 -2.23 16 4 C -0.13 -2.08 9.83 -39.52 -0.39 -2.47 16 5 C -0.01 -0.29 5.93 -39.52 -0.23 -0.53 16 6 Cl -0.05 -1.10 23.99 -51.86 -1.24 -2.35 16 7 C -0.04 -0.88 4.40 -104.44 -0.46 -1.34 16 8 C 0.11 2.56 1.97 -92.92 -0.18 2.38 16 9 H 0.05 1.26 6.75 -51.93 -0.35 0.91 16 10 C -0.50 -13.06 6.80 -34.44 -0.23 -13.29 16 11 H 0.06 1.53 7.25 -52.48 -0.38 1.15 16 12 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 13 N -0.87 -23.89 11.43 55.43 0.63 -23.26 16 14 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 C -0.08 -1.86 3.17 -90.62 -0.29 -2.15 16 19 C -0.14 -3.10 9.05 -26.73 -0.24 -3.34 16 20 C -0.23 -4.82 9.87 -26.73 -0.26 -5.09 16 21 C 0.10 1.92 6.65 -39.22 -0.26 1.66 16 22 O -0.49 -8.65 11.32 -19.40 -0.22 -8.87 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.09 2.27 6.45 -51.93 -0.33 1.93 16 30 H 0.08 2.03 8.05 -51.93 -0.42 1.61 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.39 5.42 9.06 45.56 0.41 5.83 16 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -28.34 296.10 -8.24 -36.58 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.55 Total: 5.52 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -3.29 Total: -28.07 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.63 Total: -23.26 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.22 Total: -8.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.24 Total: -2.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.34 -8.24 -36.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.291 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds