Wall clock time and date at job start Mon Mar 30 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.01148 * 2 1 4 4 C 1.38229 * 120.06195 * 180.02562 * 3 2 1 5 5 C 1.38412 * 120.09832 * 0.27931 * 4 3 2 6 6 Cl 1.73605 * 119.98032 * 179.69791 * 5 4 3 7 7 C 1.38232 * 120.03037 * 359.44960 * 5 4 3 8 8 C 1.50702 * 120.03671 * 180.25316 * 7 5 4 9 9 H 1.09001 * 109.47261 * 180.29388 * 8 7 5 10 10 C 1.50696 * 109.47031 * 300.29604 * 8 7 5 11 11 H 1.08009 * 120.00037 * 359.97438 * 10 8 7 12 12 C 1.37873 * 120.00185 * 179.97438 * 10 8 7 13 13 N 1.31510 * 119.99952 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00059 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47088 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47143 * 120.00080 * 14 12 10 17 17 H 1.48501 * 109.46986 * 239.99881 * 14 12 10 18 18 C 1.53000 * 109.47022 * 60.29392 * 8 7 5 19 19 C 1.53002 * 117.50153 * 128.62370 * 18 8 7 20 20 C 1.52999 * 117.50024 * 59.99956 * 18 8 7 21 21 C 1.38719 * 120.01054 * 180.02562 * 2 1 3 22 22 O 1.35893 * 120.05216 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.47478 * 89.99726 * 1 2 3 24 24 H 1.09005 * 109.47289 * 209.99677 * 1 2 3 25 25 H 1.09001 * 109.46991 * 329.99566 * 1 2 3 26 26 H 1.07993 * 119.96697 * 0.04583 * 3 2 1 27 27 H 1.08002 * 119.94555 * 179.97438 * 4 3 2 28 28 H 0.97003 * 120.00383 * 180.02562 * 13 12 10 29 29 H 1.09003 * 115.55104 * 274.33176 * 18 8 7 30 30 H 1.09004 * 117.49566 * 0.02562 * 19 18 8 31 31 H 1.08997 * 117.49926 * 145.01554 * 19 18 8 32 32 H 1.08997 * 117.50233 * 214.98169 * 20 18 8 33 33 H 1.08999 * 117.49984 * 359.97438 * 20 18 8 34 34 H 0.96702 * 114.00500 * 90.00167 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1965 0.0000 4 6 3.5804 1.1977 -0.0005 5 6 4.2756 0.0008 -0.0069 6 17 6.0116 0.0060 -0.0155 7 6 3.5882 -1.1985 -0.0013 8 6 4.3450 -2.5017 -0.0024 9 1 3.6388 -3.3320 -0.0027 10 6 5.2111 -2.5785 -1.2333 11 1 5.2130 -1.7651 -1.9439 12 6 6.0011 -3.6870 -1.4523 13 7 5.9992 -4.6772 -0.5868 14 14 7.0752 -3.7819 -2.9777 15 1 6.8979 -2.5486 -3.7854 16 1 8.4985 -3.9093 -2.5737 17 1 6.6826 -4.9636 -3.7868 18 6 5.2254 -2.5813 1.2464 19 6 5.1170 -3.8410 2.1081 20 6 4.5285 -2.5197 2.6071 21 6 2.2009 -1.2012 -0.0005 22 8 1.5227 -2.3788 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6578 2.1315 0.0007 27 1 4.1187 2.1340 -0.0010 28 1 6.5552 -5.4570 -0.7407 29 1 6.2056 -2.1122 1.1613 30 1 4.4187 -4.6131 1.7850 31 1 6.0260 -4.2009 2.5898 32 1 5.0504 -2.0104 3.4172 33 1 3.4430 -2.4220 2.6126 34 1 1.3260 -2.7195 -0.8839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:22 Heat of formation + Delta-G solvation = -24.692081 kcal Electronic energy + Delta-G solvation = -18544.191862 eV Core-core repulsion = 15660.886340 eV Total energy + Delta-G solvation = -2883.305522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.01435 -38.25690 -37.66431 -36.72547 -34.67662 -33.49955 -31.68574 -28.89292 -27.38871 -25.35814 -23.07364 -22.78225 -22.41794 -20.51362 -19.15161 -18.47600 -16.96652 -16.95292 -16.49923 -15.99953 -15.59114 -14.99801 -14.76018 -14.36541 -14.21715 -13.85451 -13.48351 -13.16447 -13.07201 -12.88021 -12.70596 -12.35387 -12.23303 -12.10372 -12.00604 -11.75163 -11.46913 -11.40466 -11.17083 -10.57265 -10.41176 -10.10871 -9.34546 -9.16837 -7.96919 -6.05167 0.30106 0.48431 1.39131 1.43826 1.52531 1.56923 2.47913 2.71358 3.29347 3.39657 3.50700 4.03327 4.06598 4.23125 4.31767 4.50536 4.52389 4.62766 4.76407 4.88561 4.89652 4.94564 5.10476 5.18579 5.25974 5.27927 5.40139 5.50400 5.52049 5.64847 5.72522 5.84609 5.94090 6.08588 6.41992 6.92045 6.97805 7.57399 9.07680 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.008408 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.449105 B = 3329.449117 C = 3499.697579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.113 4.113 3 C -0.109 4.109 4 C -0.123 4.123 5 C -0.035 4.035 6 Cl -0.072 7.072 7 C -0.076 4.076 8 C 0.116 3.884 9 H 0.015 0.985 10 C -0.501 4.501 11 H 0.048 0.952 12 C 0.026 3.974 13 N -0.897 5.897 14 Si 0.932 3.068 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.284 1.284 18 C -0.089 4.089 19 C -0.142 4.142 20 C -0.199 4.199 21 C 0.087 3.913 22 O -0.499 6.499 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.167 0.833 27 H 0.149 0.851 28 H 0.255 0.745 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 10.619 1.400 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.127 4.127 4 C -0.142 4.142 5 C -0.062 4.062 6 Cl -0.043 7.043 7 C -0.078 4.078 8 C 0.097 3.903 9 H 0.033 0.967 10 C -0.539 4.539 11 H 0.066 0.934 12 C -0.174 4.174 13 N -0.536 5.536 14 Si 0.760 3.240 15 H -0.196 1.196 16 H -0.214 1.214 17 H -0.210 1.210 18 C -0.108 4.108 19 C -0.179 4.179 20 C -0.236 4.236 21 C 0.042 3.958 22 O -0.310 6.310 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.184 0.816 27 H 0.167 0.833 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.122 10.491 2.035 13.423 hybrid contribution 1.244 -0.841 -1.300 1.986 sum -6.878 9.650 0.734 11.873 Atomic orbital electron populations 1.20684 0.88413 1.03622 1.03194 1.20562 0.98303 0.91774 1.00765 1.21093 0.92605 0.98255 1.00765 1.21298 0.95038 0.96374 1.01495 1.20768 0.84781 0.94532 1.06092 1.98324 1.10585 1.98662 1.96729 1.20653 0.93719 0.96365 0.97033 1.17181 0.92007 0.88539 0.92556 0.96665 1.21102 1.24486 1.02590 1.05721 0.93393 1.25447 0.97955 0.95797 0.98162 1.70146 1.40113 1.07424 1.35902 0.85898 0.79110 0.77757 0.81268 1.19600 1.21368 1.20983 1.22109 0.98920 0.99903 0.89862 1.22317 1.00816 0.90964 1.03846 1.22980 0.99017 1.02368 0.99190 1.18214 0.88469 0.85994 1.03105 1.84702 1.75483 1.36449 1.34413 0.90019 0.91763 0.89433 0.81594 0.83316 0.93613 0.90551 0.91559 0.90943 0.89161 0.90732 0.74536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.79 71.24 0.70 -1.42 16 2 C -0.11 -3.24 5.89 -19.76 -0.12 -3.36 16 3 C -0.11 -2.79 9.70 22.25 0.22 -2.58 16 4 C -0.12 -3.71 9.83 22.31 0.22 -3.49 16 5 C -0.04 -1.35 5.93 22.31 0.13 -1.22 16 6 Cl -0.07 -2.91 23.99 -2.72 -0.07 -2.97 16 7 C -0.08 -3.23 4.40 -19.75 -0.09 -3.31 16 8 C 0.12 5.69 1.97 -12.29 -0.02 5.66 16 9 H 0.02 0.84 6.75 -2.39 -0.02 0.82 16 10 C -0.50 -26.59 6.80 25.60 0.17 -26.41 16 11 H 0.05 2.59 7.25 -2.91 -0.02 2.57 16 12 C 0.03 1.43 5.30 84.65 0.45 1.88 16 13 N -0.90 -50.41 11.43 21.44 0.25 -50.17 16 14 Si 0.93 43.78 29.54 68.60 2.03 45.81 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 18 C -0.09 -4.27 3.17 -10.79 -0.03 -4.31 16 19 C -0.14 -6.61 9.05 30.60 0.28 -6.33 16 20 C -0.20 -8.35 9.87 30.59 0.30 -8.04 16 21 C 0.09 3.18 6.65 22.50 0.15 3.33 16 22 O -0.50 -17.67 11.32 -92.35 -1.04 -18.72 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.44 7.53 -2.38 -0.02 1.42 16 25 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 26 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.08 3.88 6.45 -2.39 -0.02 3.86 16 30 H 0.07 3.30 8.05 -2.38 -0.02 3.28 16 31 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.40 11.30 9.06 -74.06 -0.67 10.63 16 Total: -1.00 -62.02 296.10 3.96 -58.06 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.45 Total: 17.59 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 2.35 Total: -49.60 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.25 Total: -50.17 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.04 Total: -18.72 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.07 Total: -2.97 kcal Total: -62.02 3.96 -58.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.369 kcal (2) G-P(sol) polarization free energy of solvation -62.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds