Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38173 * 120.01381 * 2 1 4 4 C 1.38224 * 120.07124 * 179.97438 * 3 2 1 5 5 C 1.38414 * 120.09355 * 0.04346 * 4 3 2 6 6 Cl 1.73602 * 119.98166 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.02898 * 359.97438 * 5 4 3 8 8 C 1.50703 * 120.03069 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46723 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46962 * 60.00851 * 8 7 5 11 11 H 1.07997 * 119.99448 * 304.91915 * 10 8 7 12 12 C 1.37876 * 120.00000 * 124.91860 * 10 8 7 13 13 N 1.31514 * 119.99574 * 184.87375 * 12 10 8 14 14 Si 1.86798 * 120.00124 * 4.87050 * 12 10 8 15 15 H 1.48500 * 109.46593 * 84.75990 * 14 12 10 16 16 H 1.48495 * 109.46992 * 204.75487 * 14 12 10 17 17 H 1.48498 * 109.47240 * 324.75896 * 14 12 10 18 18 C 1.52994 * 109.47405 * 300.00738 * 8 7 5 19 19 C 1.53005 * 117.49759 * 243.71984 * 18 8 7 20 20 C 1.53007 * 117.50005 * 175.06231 * 18 8 7 21 21 C 1.38716 * 120.01788 * 179.71593 * 2 1 3 22 22 O 1.35902 * 120.04795 * 0.02952 * 21 2 1 23 23 H 1.08999 * 109.47210 * 90.00122 * 1 2 3 24 24 H 1.08999 * 109.47487 * 330.00596 * 1 2 3 25 25 H 1.09003 * 109.47156 * 210.00230 * 1 2 3 26 26 H 1.08000 * 119.96635 * 359.96790 * 3 2 1 27 27 H 1.07996 * 119.95400 * 180.02562 * 4 3 2 28 28 H 0.97001 * 119.99741 * 179.97438 * 13 12 10 29 29 H 1.08996 * 115.55645 * 29.38551 * 18 8 7 30 30 H 1.09006 * 117.49736 * 0.02562 * 19 18 8 31 31 H 1.08993 * 117.50197 * 145.01803 * 19 18 8 32 32 H 1.08998 * 117.49703 * 214.97699 * 20 18 8 33 33 H 1.08997 * 117.49320 * 359.97438 * 20 18 8 34 34 H 0.96700 * 114.00344 * 89.98878 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1964 0.0000 4 6 3.5803 1.1978 0.0005 5 6 4.2756 0.0010 0.0002 6 17 6.0116 0.0061 0.0002 7 6 3.5882 -1.1984 -0.0002 8 6 4.3451 -2.5015 -0.0012 9 1 3.6389 -3.3318 -0.0018 10 6 5.2120 -2.5798 1.2290 11 1 5.9205 -1.7928 1.4412 12 6 5.1006 -3.6561 2.0835 13 7 5.7866 -3.6787 3.2053 14 14 3.9752 -5.0820 1.6479 15 1 4.6993 -6.0323 0.7659 16 1 3.5572 -5.7800 2.8902 17 1 2.7748 -4.5672 0.9414 18 6 5.2245 -2.5796 -1.2507 19 6 4.9171 -3.6849 -2.2630 20 6 6.1637 -3.7807 -1.3797 21 6 2.2009 -1.2011 0.0060 22 8 1.5228 -2.3788 0.0112 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5137 25 1 -0.3633 -0.8900 0.5139 26 1 1.6578 2.1316 -0.0005 27 1 4.1186 2.1341 0.0010 28 1 5.7080 -4.4357 3.8067 29 1 5.5739 -1.6235 -1.6402 30 1 4.0880 -4.3562 -2.0390 31 1 5.0646 -3.4560 -3.3184 32 1 7.1307 -3.6146 -1.8544 33 1 6.1551 -4.5149 -0.5742 34 1 1.3267 -2.7237 -0.8707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = -23.703090 kcal Electronic energy + Delta-G solvation = -18565.552927 eV Core-core repulsion = 15682.290291 eV Total energy + Delta-G solvation = -2883.262636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07165 -38.44652 -37.77045 -36.82007 -34.78048 -33.64156 -31.87937 -29.18902 -27.45018 -25.38377 -23.09028 -22.91625 -22.45978 -20.46474 -19.44747 -18.88693 -17.13030 -16.96447 -16.42263 -16.23335 -15.54848 -15.14715 -14.83850 -14.64310 -14.21064 -13.97812 -13.64570 -13.38384 -13.15967 -12.91633 -12.85347 -12.56144 -12.32870 -12.19540 -12.07788 -11.67211 -11.44027 -11.33984 -11.12310 -10.71891 -10.59603 -10.26434 -9.36695 -9.19324 -8.17889 -6.17922 0.26561 0.44683 1.32491 1.37173 1.46141 1.48563 2.40319 2.66502 3.10895 3.27553 3.43001 3.84617 4.01913 4.18996 4.23136 4.35231 4.43388 4.49212 4.73446 4.76847 4.87131 4.87791 4.91398 5.07481 5.13115 5.20968 5.26863 5.39087 5.43011 5.49799 5.64312 5.67983 5.76073 5.92347 6.47217 6.90911 6.95448 7.45007 8.96732 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.010044 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.277054 B = 2787.176177 C = 3301.239905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.111 4.111 3 C -0.110 4.110 4 C -0.121 4.121 5 C -0.041 4.041 6 Cl -0.072 7.072 7 C -0.077 4.077 8 C 0.068 3.932 9 H 0.056 0.944 10 C -0.482 4.482 11 H 0.066 0.934 12 C 0.016 3.984 13 N -0.951 5.951 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.303 1.303 17 H -0.228 1.228 18 C -0.137 4.137 19 C -0.178 4.178 20 C -0.180 4.180 21 C 0.086 3.914 22 O -0.498 6.498 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.167 0.833 27 H 0.149 0.851 28 H 0.259 0.741 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 7.808 -12.080 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.111 4.111 3 C -0.128 4.128 4 C -0.140 4.140 5 C -0.067 4.067 6 Cl -0.043 7.043 7 C -0.079 4.079 8 C 0.049 3.951 9 H 0.074 0.926 10 C -0.520 4.520 11 H 0.084 0.916 12 C -0.180 4.180 13 N -0.593 5.593 14 Si 0.736 3.264 15 H -0.194 1.194 16 H -0.231 1.231 17 H -0.152 1.152 18 C -0.155 4.155 19 C -0.215 4.215 20 C -0.217 4.217 21 C 0.041 3.959 22 O -0.310 6.310 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.184 0.816 27 H 0.167 0.833 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -9.596 7.753 -11.323 16.745 hybrid contribution 0.415 -1.176 0.138 1.255 sum -9.181 6.577 -11.185 15.895 Atomic orbital electron populations 1.20693 0.88336 1.03495 1.03451 1.20570 0.98355 0.91788 1.00426 1.21099 0.92576 0.98342 1.00786 1.21297 0.95092 0.96388 1.01196 1.20769 0.84576 0.94758 1.06623 1.98323 1.10850 1.98577 1.96515 1.20627 0.93764 0.96323 0.97149 1.17914 0.93060 0.91448 0.92707 0.92561 1.21409 1.19194 1.06504 1.04904 0.91555 1.25784 0.96982 1.00662 0.94577 1.70039 1.45146 1.31985 1.12098 0.86298 0.82053 0.80441 0.77586 1.19391 1.23077 1.15184 1.22593 1.02152 0.93578 0.97201 1.23146 0.98964 1.02516 0.96898 1.22698 0.94829 1.02202 1.01969 1.18166 0.88365 0.86038 1.03305 1.84827 1.75548 1.36217 1.34373 0.89355 0.89709 0.91959 0.81582 0.83341 0.93210 0.88343 0.89633 0.87085 0.88704 0.91678 0.74510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.79 71.23 0.70 -1.40 16 2 C -0.11 -3.13 5.89 -19.77 -0.12 -3.25 16 3 C -0.11 -2.81 9.70 22.25 0.22 -2.60 16 4 C -0.12 -3.65 9.83 22.31 0.22 -3.43 16 5 C -0.04 -1.55 5.89 22.31 0.13 -1.42 16 6 Cl -0.07 -2.86 23.10 -2.72 -0.06 -2.93 16 7 C -0.08 -3.17 4.79 -19.75 -0.09 -3.26 16 8 C 0.07 3.07 1.94 -12.29 -0.02 3.04 16 9 H 0.06 2.59 3.06 -2.39 -0.01 2.58 16 10 C -0.48 -26.86 7.54 25.60 0.19 -26.67 16 11 H 0.07 4.01 5.78 -2.91 -0.02 3.99 16 12 C 0.02 0.93 5.47 84.65 0.46 1.40 16 13 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 14 Si 0.91 45.05 26.75 68.60 1.84 46.89 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 17 H -0.23 -10.46 6.06 99.48 0.60 -9.86 16 18 C -0.14 -5.46 4.41 -10.79 -0.05 -5.51 16 19 C -0.18 -5.90 10.18 30.62 0.31 -5.59 16 20 C -0.18 -7.10 9.78 30.62 0.30 -6.80 16 21 C 0.09 3.07 6.65 22.50 0.15 3.22 16 22 O -0.50 -16.89 11.17 -92.44 -1.03 -17.92 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 25 H 0.06 1.41 7.52 -2.39 -0.02 1.39 16 26 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 27 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.10 3.84 5.91 -2.39 -0.01 3.82 16 30 H 0.09 2.76 8.03 -2.38 -0.02 2.74 16 31 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 33 H 0.06 2.96 7.35 -2.39 -0.02 2.94 16 34 H 0.40 9.43 9.06 -74.06 -0.67 8.76 16 Total: -1.00 -70.30 290.78 3.79 -66.50 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.36 Total: 20.12 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 2.40 Total: -52.26 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.30 Total: -60.40 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.03 Total: -17.92 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.84 Total: 46.89 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.06 Total: -2.93 kcal Total: -70.30 3.79 -66.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.798 kcal (2) G-P(sol) polarization free energy of solvation -70.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds