Wall clock time and date at job start Mon Mar 30 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38174 * 119.97711 * 2 1 4 4 C 1.38697 * 119.95569 * 180.02562 * 3 2 1 5 5 O 1.35924 * 120.03923 * 180.02562 * 4 3 2 6 6 C 1.38743 * 119.91972 * 0.02562 * 4 3 2 7 7 C 1.50697 * 120.02573 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46794 * 359.97438 * 7 6 4 9 9 C 1.50704 * 109.47276 * 240.00201 * 7 6 4 10 10 H 1.07991 * 120.00009 * 275.51967 * 9 7 6 11 11 C 1.37882 * 119.99942 * 95.51432 * 9 7 6 12 12 N 1.31522 * 119.99633 * 352.01628 * 11 9 7 13 13 Si 1.86792 * 119.99832 * 172.01330 * 11 9 7 14 14 H 1.48497 * 109.47433 * 60.00479 * 13 11 9 15 15 H 1.48505 * 109.47226 * 299.99939 * 13 11 9 16 16 H 1.48503 * 109.47082 * 180.02562 * 13 11 9 17 17 C 1.52991 * 109.47207 * 120.00106 * 7 6 4 18 18 C 1.53004 * 117.49823 * 252.93153 * 17 7 6 19 19 C 1.53005 * 117.50114 * 184.27611 * 17 7 6 20 20 C 1.38119 * 119.95363 * 0.25651 * 6 4 3 21 21 C 1.38347 * 119.98149 * 180.02562 * 2 1 3 22 22 Cl 1.73601 * 119.95685 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.47203 * 90.00169 * 1 2 3 24 24 H 1.09002 * 109.46513 * 209.99519 * 1 2 3 25 25 H 1.08998 * 109.47403 * 329.99454 * 1 2 3 26 26 H 1.07996 * 120.01512 * 0.03164 * 3 2 1 27 27 H 0.96699 * 113.99708 * 269.97441 * 5 4 3 28 28 H 0.96990 * 120.00242 * 5.26086 * 12 11 9 29 29 H 1.09000 * 115.55418 * 38.60613 * 17 7 6 30 30 H 1.09001 * 117.49930 * 0.02562 * 18 17 7 31 31 H 1.09006 * 117.49626 * 145.01852 * 18 17 7 32 32 H 1.08997 * 117.49999 * 214.98709 * 19 17 7 33 33 H 1.08999 * 117.49555 * 359.97438 * 19 17 7 34 34 H 1.08003 * 119.97988 * 179.72129 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1969 0.0000 4 6 3.5844 1.1964 -0.0005 5 8 4.2652 2.3728 0.0000 6 6 4.2759 -0.0064 -0.0016 7 6 5.7829 -0.0098 -0.0028 8 1 6.1485 1.0171 -0.0031 9 6 6.2828 -0.7207 -1.2340 10 1 6.3756 -1.7966 -1.2360 11 6 6.6215 0.0026 -2.3580 12 7 6.3625 1.2908 -2.4137 13 14 7.4483 -0.8473 -3.8013 14 1 6.5610 -1.9196 -4.3189 15 1 8.7345 -1.4410 -3.3557 16 1 7.7073 0.1434 -4.8768 17 6 6.2923 -0.7327 1.2456 18 6 6.9061 0.1224 2.3561 19 6 7.8039 -0.7560 1.4812 20 6 3.5823 -1.2008 -0.0075 21 6 2.1983 -1.1983 -0.0005 22 17 1.3287 -2.7008 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6573 2.1321 0.0005 27 1 4.4622 2.7136 -0.8833 28 1 6.0036 1.7474 -1.6368 29 1 5.7228 -1.6127 1.5446 30 1 6.9466 1.2000 2.1973 31 1 6.7406 -0.1952 3.3856 32 1 8.2287 -1.6512 1.9353 33 1 8.4355 -0.2566 0.7465 34 1 4.1202 -2.1373 -0.0129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100246.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:37 Heat of formation + Delta-G solvation = -36.033734 kcal Electronic energy + Delta-G solvation = -18218.670908 eV Core-core repulsion = 15334.873575 eV Total energy + Delta-G solvation = -2883.797333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -41.07992 -38.48223 -38.11380 -36.93226 -35.25037 -33.64673 -30.61899 -30.12579 -26.96766 -25.05027 -23.80576 -23.10950 -22.33456 -21.11664 -19.06880 -18.57970 -17.47527 -17.20861 -16.13635 -15.90982 -15.65240 -15.25816 -15.01087 -14.74544 -14.52445 -13.81687 -13.74465 -13.41605 -13.19032 -12.96895 -12.62322 -12.55947 -12.35222 -12.08731 -11.99493 -11.89578 -11.49138 -11.42150 -11.38280 -10.99824 -10.50665 -10.28883 -9.63942 -9.15150 -8.54901 -6.24352 0.15498 0.39901 1.16776 1.54419 1.60034 1.78700 2.50482 2.61708 3.08991 3.24921 3.37102 3.82178 3.90971 3.99052 4.18782 4.26553 4.38922 4.47985 4.66780 4.69187 4.73908 4.78906 4.80200 4.94397 5.05520 5.12842 5.22513 5.31115 5.35414 5.38739 5.59738 5.68997 5.78676 6.14462 6.29324 6.64073 6.80378 7.50676 8.85388 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.007557 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.804949 B = 3704.449131 C = 3980.934565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.136 4.136 4 C 0.081 3.919 5 O -0.503 6.503 6 C -0.069 4.069 7 C 0.089 3.911 8 H 0.031 0.969 9 C -0.579 4.579 10 H 0.044 0.956 11 C -0.023 4.023 12 N -0.936 5.936 13 Si 1.103 2.897 14 H -0.278 1.278 15 H -0.273 1.273 16 H -0.287 1.287 17 C -0.138 4.138 18 C -0.181 4.181 19 C -0.165 4.165 20 C -0.096 4.096 21 C -0.050 4.050 22 Cl -0.066 7.066 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.392 0.608 28 H 0.266 0.734 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -2.843 5.323 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.154 4.154 4 C 0.037 3.963 5 O -0.315 6.315 6 C -0.070 4.070 7 C 0.070 3.930 8 H 0.049 0.951 9 C -0.617 4.617 10 H 0.062 0.938 11 C -0.222 4.222 12 N -0.576 5.576 13 Si 0.927 3.073 14 H -0.203 1.203 15 H -0.199 1.199 16 H -0.212 1.212 17 C -0.157 4.157 18 C -0.218 4.218 19 C -0.202 4.202 20 C -0.115 4.115 21 C -0.077 4.077 22 Cl -0.037 7.037 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.170 0.830 27 H 0.250 0.750 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.159 -2.783 4.404 9.681 hybrid contribution -0.207 -0.178 0.850 0.893 sum -8.366 -2.962 5.254 10.313 Atomic orbital electron populations 1.20840 0.87780 1.04206 1.03527 1.19782 0.98117 0.90038 1.00892 1.21351 0.92410 0.98854 1.02825 1.18682 0.90504 0.85257 1.01871 1.84684 1.76697 1.35906 1.34171 1.20942 0.98831 0.91848 0.95387 1.17478 0.86834 0.96117 0.92525 0.95114 1.22024 1.45837 0.94406 0.99437 0.93758 1.26923 0.95537 0.96369 1.03342 1.70937 1.43880 1.10744 1.32011 0.83081 0.76375 0.74571 0.73292 1.20335 1.19852 1.21229 1.22302 0.95986 1.00665 0.96729 1.23021 1.05390 0.97152 0.96244 1.22737 0.93340 1.01978 1.02128 1.20661 0.91790 0.98326 1.00736 1.20855 0.91793 0.87231 1.07813 1.98303 1.76298 1.32035 1.97041 0.90031 0.90537 0.89489 0.82962 0.75039 0.92168 0.89164 0.90606 0.87431 0.87638 0.90945 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.61 71.24 0.68 -1.75 16 2 C -0.09 -2.77 5.88 -19.85 -0.12 -2.89 16 3 C -0.14 -4.64 9.64 22.36 0.22 -4.43 16 4 C 0.08 3.37 6.68 22.50 0.15 3.52 16 5 O -0.50 -20.79 11.88 -92.70 -1.10 -21.89 16 6 C -0.07 -3.07 4.78 -19.77 -0.09 -3.16 16 7 C 0.09 4.29 1.88 -12.29 -0.02 4.27 16 8 H 0.03 1.63 5.17 -2.39 -0.01 1.62 16 9 C -0.58 -30.59 7.67 25.60 0.20 -30.39 16 10 H 0.04 2.36 7.83 -2.91 -0.02 2.34 16 11 C -0.02 -1.22 5.44 84.65 0.46 -0.76 16 12 N -0.94 -52.95 13.62 21.45 0.29 -52.66 16 13 Si 1.10 48.96 29.91 68.60 2.05 51.02 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 17 C -0.14 -5.79 4.95 -10.79 -0.05 -5.84 16 18 C -0.18 -6.59 10.18 30.62 0.31 -6.28 16 19 C -0.16 -6.27 9.99 30.62 0.31 -5.97 16 20 C -0.10 -3.94 8.43 22.28 0.19 -3.75 16 21 C -0.05 -1.77 6.31 22.33 0.14 -1.63 16 22 Cl -0.07 -1.93 27.29 -2.72 -0.07 -2.01 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.08 1.64 6.90 -2.39 -0.02 1.62 16 25 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 26 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 27 H 0.39 15.37 7.67 -74.06 -0.57 14.80 16 28 H 0.27 14.60 4.72 -92.72 -0.44 14.16 16 29 H 0.09 3.62 7.43 -2.39 -0.02 3.60 16 30 H 0.08 2.92 8.08 -2.39 -0.02 2.90 16 31 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.12 5.04 7.82 -2.91 -0.02 5.01 16 Total: -1.00 -59.61 299.79 4.42 -55.19 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.88 Total: 29.39 kcal Atomic # 6 Polarization: -61.42 SS G_CDS: 2.37 Total: -59.05 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.29 Total: -52.66 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.10 Total: -21.89 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.02 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.01 kcal Total: -59.61 4.42 -55.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100246.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.160 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds