Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47186 * 270.00444 * 3 2 1 5 5 H 1.48499 * 109.46771 * 30.00472 * 3 2 1 6 6 H 1.48496 * 109.46770 * 150.00288 * 3 2 1 7 7 C 1.37880 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00332 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99717 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.38165 * 120.02031 * 264.71696 * 10 9 7 12 12 C 1.38345 * 120.04130 * 180.29727 * 11 10 9 13 13 Cl 1.73602 * 119.95715 * 179.97438 * 12 11 10 14 14 C 1.38382 * 120.08536 * 359.96490 * 12 11 10 15 15 C 1.38125 * 120.04678 * 0.03744 * 14 12 11 16 16 C 1.38698 * 120.02040 * 84.99837 * 10 9 7 17 17 O 1.35925 * 120.04493 * 359.74510 * 16 10 9 18 18 C 1.42900 * 116.99907 * 186.03168 * 17 16 10 19 19 C 1.53778 * 113.61523 * 255.34648 * 18 17 16 20 20 C 1.53778 * 87.07976 * 220.01999 * 19 18 17 21 21 C 1.53785 * 113.60964 * 157.84772 * 18 17 16 22 22 H 0.96997 * 119.99955 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47160 * 59.99238 * 9 7 2 24 24 H 1.09003 * 109.47245 * 299.99257 * 9 7 2 25 25 H 1.08000 * 119.97763 * 0.28214 * 11 10 9 26 26 H 1.08003 * 119.97987 * 180.02562 * 14 12 11 27 27 H 1.07992 * 120.02454 * 179.97438 * 15 14 12 28 28 H 1.08999 * 112.85014 * 26.65613 * 18 17 16 29 29 H 1.08999 * 113.61690 * 334.56986 * 19 18 17 30 30 H 1.09002 * 113.61366 * 105.47411 * 19 18 17 31 31 H 1.09001 * 113.61669 * 270.88299 * 20 19 18 32 32 H 1.09005 * 113.61511 * 139.97990 * 20 19 18 33 33 H 1.08999 * 113.61529 * 254.52696 * 21 18 17 34 34 H 1.08990 * 113.61575 * 25.35496 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 6 4.3486 -3.2296 1.1902 12 6 4.8156 -4.5318 1.1903 13 17 5.2362 -5.3019 2.6882 14 6 4.9478 -5.2214 -0.0022 15 6 4.6142 -4.6103 -1.1951 16 6 4.1460 -3.3042 -1.1972 17 8 3.8177 -2.7010 -2.3702 18 6 3.8518 -3.5101 -3.5476 19 6 5.0725 -3.2426 -4.4438 20 6 4.1226 -3.3824 -5.6450 21 6 2.9875 -2.9632 -4.6960 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6801 -0.8912 25 1 4.2458 -2.6930 2.1219 26 1 5.3121 -6.2381 -0.0001 27 1 4.7179 -5.1487 -2.1255 28 1 3.6841 -4.5669 -3.3400 29 1 5.4872 -2.2410 -4.3293 30 1 5.8308 -4.0240 -4.3934 31 1 4.0300 -4.4047 -6.0117 32 1 4.3153 -2.6622 -6.4402 33 1 2.0625 -3.5191 -4.8493 34 1 2.8309 -1.8856 -4.6497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = -6.016810 kcal Electronic energy + Delta-G solvation = -17762.689917 eV Core-core repulsion = 14880.194215 eV Total energy + Delta-G solvation = -2882.495702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14006 -38.38057 -36.42816 -35.47898 -33.43520 -31.53315 -29.43350 -27.56301 -25.64190 -25.28288 -23.16489 -21.88064 -20.60875 -19.39576 -17.93627 -16.76098 -16.10241 -15.72912 -15.38793 -14.63802 -14.21603 -14.15518 -13.96202 -13.04302 -12.85084 -12.42939 -12.37102 -12.19545 -12.07024 -11.64167 -11.46460 -11.35933 -11.03793 -10.82218 -10.67682 -10.46481 -10.38976 -10.04167 -9.97133 -9.88230 -9.35744 -8.53449 -8.35248 -7.49201 -6.02891 -4.00592 1.66931 1.74359 2.51830 3.31939 3.39026 3.41922 3.64211 4.10665 4.45457 4.57502 4.59567 4.82571 4.84857 5.10777 5.14030 5.30532 5.35620 5.59759 5.62786 5.79473 5.79981 5.83997 5.96788 6.00052 6.12253 6.27913 6.36364 6.47161 6.61988 6.72721 6.95589 7.16334 7.39813 7.72239 7.92531 8.53059 9.01360 9.57468 11.10282 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.008913 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.055750 B = 3140.641020 C = 5343.968337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.050 4.050 11 C -0.078 4.078 12 C -0.070 4.070 13 Cl -0.091 7.091 14 C -0.095 4.095 15 C -0.204 4.204 16 C 0.136 3.864 17 O -0.277 6.277 18 C 0.052 3.948 19 C -0.157 4.157 20 C -0.141 4.141 21 C -0.130 4.130 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.031 0.969 25 H 0.136 0.864 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.965 -9.109 -6.237 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.541 4.541 8 H 0.090 0.910 9 C -0.013 4.013 10 C -0.051 4.051 11 C -0.097 4.097 12 C -0.096 4.096 13 Cl -0.062 7.062 14 C -0.114 4.114 15 C -0.223 4.223 16 C 0.090 3.910 17 O -0.189 6.189 18 C -0.004 4.004 19 C -0.194 4.194 20 C -0.178 4.178 21 C -0.167 4.167 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.154 0.846 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.781 -8.851 -6.147 15.243 hybrid contribution 0.350 0.499 0.095 0.617 sum 11.131 -8.352 -6.051 15.175 Atomic orbital electron populations 1.69898 1.06199 1.26820 1.51102 1.24946 0.94696 0.98854 0.94626 0.86836 0.80411 0.83841 0.78612 1.20192 1.21337 1.18954 1.20842 0.88017 0.94549 1.50713 0.91005 1.18670 0.97610 0.87481 0.97579 1.19655 0.97330 0.99245 0.88841 1.20802 0.97830 0.92564 0.98482 1.20689 1.07965 0.94602 0.86363 1.98316 1.92397 1.81519 1.34002 1.20542 1.00976 0.99496 0.90353 1.21046 1.07562 0.95232 0.98451 1.18932 0.94557 0.91004 0.86470 1.86357 1.82671 1.37096 1.12814 1.24115 0.97472 0.95658 0.83205 1.23518 0.97005 1.03151 0.95762 1.22655 0.96828 1.01784 0.96564 1.23156 0.97451 1.03231 0.92905 0.92710 0.95400 0.95045 0.84646 0.85699 0.85329 0.88694 0.88972 0.91268 0.90054 0.90653 0.90629 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.50 -14.37 9.65 -34.44 -0.33 -14.70 16 8 H 0.07 2.25 7.98 -52.49 -0.42 1.84 16 9 C 0.02 0.57 3.89 -29.04 -0.11 0.46 16 10 C -0.05 -1.06 5.08 -104.48 -0.53 -1.59 16 11 C -0.08 -1.49 9.46 -39.57 -0.37 -1.86 16 12 C -0.07 -1.17 6.32 -39.49 -0.25 -1.42 16 13 Cl -0.09 -1.35 28.95 -51.86 -1.50 -2.85 16 14 C -0.09 -1.46 9.82 -39.57 -0.39 -1.84 16 15 C -0.20 -3.24 9.01 -39.43 -0.36 -3.60 16 16 C 0.14 2.63 6.65 -39.22 -0.26 2.37 16 17 O -0.28 -5.35 9.29 -19.50 -0.18 -5.53 16 18 C 0.05 0.75 3.63 -25.92 -0.09 0.66 16 19 C -0.16 -1.83 7.91 -25.92 -0.21 -2.03 16 20 C -0.14 -1.42 8.08 -25.92 -0.21 -1.63 16 21 C -0.13 -1.70 7.91 -25.91 -0.21 -1.91 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 24 H 0.03 0.77 7.12 -51.93 -0.37 0.40 16 25 H 0.14 2.49 8.06 -52.49 -0.42 2.06 16 26 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.13 1.66 5.95 -52.49 -0.31 1.35 16 28 H 0.10 1.22 6.05 -51.93 -0.31 0.91 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -30.79 300.80 -8.79 -39.58 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.33 Total: -0.56 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -3.42 Total: -25.17 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.77 Total: -26.96 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.18 Total: -5.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.50 Total: -2.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.79 -8.79 -39.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.564 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds