Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99866 * 2 1 4 4 H 1.48497 * 109.47186 * 270.00444 * 3 2 1 5 5 H 1.48499 * 109.46771 * 30.00472 * 3 2 1 6 6 H 1.48496 * 109.46770 * 150.00288 * 3 2 1 7 7 C 1.37880 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00332 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99717 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.38165 * 120.02031 * 264.71696 * 10 9 7 12 12 C 1.38345 * 120.04130 * 180.29727 * 11 10 9 13 13 Cl 1.73602 * 119.95715 * 179.97438 * 12 11 10 14 14 C 1.38382 * 120.08536 * 359.96490 * 12 11 10 15 15 C 1.38125 * 120.04678 * 0.03744 * 14 12 11 16 16 C 1.38698 * 120.02040 * 84.99837 * 10 9 7 17 17 O 1.35925 * 120.04493 * 359.74510 * 16 10 9 18 18 C 1.42900 * 116.99907 * 186.03168 * 17 16 10 19 19 C 1.53778 * 113.61523 * 255.34648 * 18 17 16 20 20 C 1.53778 * 87.07976 * 220.01999 * 19 18 17 21 21 C 1.53785 * 113.60964 * 157.84772 * 18 17 16 22 22 H 0.96997 * 119.99955 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47160 * 59.99238 * 9 7 2 24 24 H 1.09003 * 109.47245 * 299.99257 * 9 7 2 25 25 H 1.08000 * 119.97763 * 0.28214 * 11 10 9 26 26 H 1.08003 * 119.97987 * 180.02562 * 14 12 11 27 27 H 1.07992 * 120.02454 * 179.97438 * 15 14 12 28 28 H 1.08999 * 112.85014 * 26.65613 * 18 17 16 29 29 H 1.08999 * 113.61690 * 334.56986 * 19 18 17 30 30 H 1.09002 * 113.61366 * 105.47411 * 19 18 17 31 31 H 1.09001 * 113.61669 * 270.88299 * 20 19 18 32 32 H 1.09005 * 113.61511 * 139.97990 * 20 19 18 33 33 H 1.08999 * 113.61529 * 254.52696 * 21 18 17 34 34 H 1.08990 * 113.61575 * 25.35496 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 6 4.3486 -3.2296 1.1902 12 6 4.8156 -4.5318 1.1903 13 17 5.2362 -5.3019 2.6882 14 6 4.9478 -5.2214 -0.0022 15 6 4.6142 -4.6103 -1.1951 16 6 4.1460 -3.3042 -1.1972 17 8 3.8177 -2.7010 -2.3702 18 6 3.8518 -3.5101 -3.5476 19 6 5.0725 -3.2426 -4.4438 20 6 4.1226 -3.3824 -5.6450 21 6 2.9875 -2.9632 -4.6960 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6801 -0.8912 25 1 4.2458 -2.6930 2.1219 26 1 5.3121 -6.2381 -0.0001 27 1 4.7179 -5.1487 -2.1255 28 1 3.6841 -4.5669 -3.3400 29 1 5.4872 -2.2410 -4.3293 30 1 5.8308 -4.0240 -4.3934 31 1 4.0300 -4.4047 -6.0117 32 1 4.3153 -2.6622 -6.4402 33 1 2.0625 -3.5191 -4.8493 34 1 2.8309 -1.8856 -4.6497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = -23.003697 kcal Electronic energy + Delta-G solvation = -17763.426524 eV Core-core repulsion = 14880.194215 eV Total energy + Delta-G solvation = -2883.232308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41712 -39.57127 -37.64953 -36.74405 -35.39497 -33.38695 -30.83887 -29.33359 -26.61709 -26.33992 -25.00963 -23.15591 -22.18677 -20.44849 -19.22035 -18.97613 -17.41031 -17.10073 -16.48347 -16.27275 -15.75068 -15.44495 -15.25838 -14.84391 -14.24494 -13.98951 -13.77869 -13.50772 -13.41548 -13.14260 -12.80256 -12.68819 -12.40555 -12.26918 -12.02344 -11.98384 -11.76243 -11.63371 -11.48454 -11.22873 -11.03965 -10.77447 -9.79832 -8.89097 -8.28453 -6.31417 0.30108 0.36338 1.22728 1.34609 1.35903 1.47651 2.35197 2.40512 2.72931 3.06027 3.58299 3.62887 3.79095 3.83915 3.90432 3.97363 4.20487 4.34226 4.49493 4.60626 4.78438 4.81499 4.85255 4.96173 5.00464 5.04743 5.09281 5.12625 5.24694 5.29868 5.39837 5.53268 5.62919 5.79111 6.25472 6.64087 6.71721 7.30361 8.88296 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.008913 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.055750 B = 3140.641020 C = 5343.968337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.247 1.247 7 C -0.506 4.506 8 H 0.025 0.975 9 C 0.034 3.966 10 C -0.094 4.094 11 C -0.087 4.087 12 C -0.076 4.076 13 Cl -0.071 7.071 14 C -0.079 4.079 15 C -0.194 4.194 16 C 0.123 3.877 17 O -0.312 6.312 18 C 0.033 3.967 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.144 4.144 22 H 0.266 0.734 23 H 0.030 0.970 24 H 0.026 0.974 25 H 0.131 0.869 26 H 0.163 0.837 27 H 0.164 0.836 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.309 -10.571 -7.185 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.544 4.544 8 H 0.043 0.957 9 C -0.003 4.003 10 C -0.095 4.095 11 C -0.105 4.105 12 C -0.103 4.103 13 Cl -0.042 7.042 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.077 3.923 17 O -0.226 6.226 18 C -0.023 4.023 19 C -0.187 4.187 20 C -0.157 4.157 21 C -0.181 4.181 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.149 0.851 26 H 0.181 0.819 27 H 0.182 0.818 28 H 0.130 0.870 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.142 -10.329 -7.096 18.159 hybrid contribution -0.420 0.799 0.393 0.984 sum 12.722 -9.530 -6.703 17.251 Atomic orbital electron populations 1.70052 1.08123 1.28049 1.52754 1.25893 0.95574 1.03068 0.94210 0.85729 0.79635 0.78597 0.79175 1.19371 1.20603 1.17014 1.21036 0.90521 0.92780 1.50048 0.95664 1.18414 0.94502 0.90309 0.97101 1.19519 1.00712 0.98356 0.90919 1.20804 0.98270 0.93833 0.97640 1.20767 1.07623 0.93957 0.87938 1.98321 1.92150 1.80860 1.32914 1.21006 0.98729 1.00740 0.89285 1.21384 1.05811 0.93750 1.00259 1.19116 0.94906 0.92270 0.85984 1.86311 1.82981 1.39259 1.14013 1.24633 0.99636 0.96139 0.81890 1.23465 0.96757 1.03184 0.95309 1.22640 0.93796 1.03471 0.95765 1.23244 0.98901 1.01789 0.94199 0.92480 0.95159 0.95627 0.85064 0.81906 0.81825 0.86962 0.90375 0.88871 0.87440 0.89529 0.90309 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.51 -30.31 9.65 25.60 0.25 -30.06 16 8 H 0.02 1.69 7.98 -2.91 -0.02 1.66 16 9 C 0.03 1.70 3.89 29.10 0.11 1.81 16 10 C -0.09 -4.09 5.08 -19.77 -0.10 -4.19 16 11 C -0.09 -3.33 9.46 22.28 0.21 -3.12 16 12 C -0.08 -2.43 6.32 22.33 0.14 -2.29 16 13 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.03 16 14 C -0.08 -2.17 9.82 22.28 0.22 -1.95 16 15 C -0.19 -5.66 9.01 22.36 0.20 -5.46 16 16 C 0.12 4.74 6.65 22.50 0.15 4.89 16 17 O -0.31 -12.25 9.29 -92.70 -0.86 -13.11 16 18 C 0.03 0.90 3.63 31.12 0.11 1.01 16 19 C -0.15 -3.14 7.91 31.12 0.25 -2.89 16 20 C -0.12 -2.09 8.08 31.12 0.25 -1.84 16 21 C -0.14 -3.71 7.91 31.12 0.25 -3.47 16 22 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.03 1.46 7.11 -2.39 -0.02 1.45 16 24 H 0.03 1.29 7.12 -2.39 -0.02 1.27 16 25 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 27 H 0.16 3.54 5.95 -2.91 -0.02 3.52 16 28 H 0.11 2.61 6.05 -2.39 -0.01 2.59 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.30 300.80 4.79 -65.51 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.04 Total: 9.24 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 2.50 Total: -46.55 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.30 Total: -60.41 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.86 Total: -13.11 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.03 kcal Total: -70.30 4.79 -65.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.507 kcal (2) G-P(sol) polarization free energy of solvation -70.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds