Wall clock time and date at job start Mon Mar 30 2020 08:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38519 * 120.80081 * 264.71776 * 10 9 7 12 12 N 1.32370 * 119.11872 * 179.76502 * 11 10 9 13 13 C 1.31801 * 120.85241 * 0.52288 * 12 11 10 14 14 C 1.50695 * 119.11694 * 179.70956 * 13 12 11 15 15 C 1.54262 * 110.03474 * 57.92245 * 14 13 12 16 16 C 1.54966 * 104.16266 * 217.13713 * 15 14 13 17 17 C 1.54891 * 102.77575 * 37.89114 * 16 15 14 18 18 C 1.53882 * 110.02965 * 300.71025 * 14 13 12 19 19 N 1.31776 * 121.76996 * 359.72271 * 13 12 11 20 20 C 1.32463 * 120.79605 * 0.02562 * 19 13 12 21 21 Cl 1.73595 * 120.46536 * 180.02562 * 20 19 13 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.08000 * 120.44637 * 359.97438 * 11 10 9 26 26 H 1.08996 * 110.02326 * 179.31757 * 14 13 12 27 27 H 1.09000 * 110.48955 * 335.78753 * 15 14 13 28 28 H 1.09003 * 110.48607 * 98.43088 * 15 14 13 29 29 H 1.08995 * 110.72253 * 279.57708 * 16 15 14 30 30 H 1.09005 * 110.76283 * 156.21872 * 16 15 14 31 31 H 1.08996 * 110.48483 * 203.40302 * 17 16 15 32 32 H 1.09003 * 110.60086 * 80.81696 * 17 16 15 33 33 H 1.09008 * 110.02760 * 238.56945 * 18 14 13 34 34 H 1.09000 * 110.03451 * 359.94931 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6088 -4.2544 -1.1862 12 7 3.4749 -5.2547 -1.1477 13 6 3.9677 -5.6783 -0.0011 14 6 4.9462 -6.8245 -0.0022 15 6 6.1686 -6.4749 -0.8757 16 6 6.5347 -7.8121 -1.5681 17 6 5.1480 -8.4351 -1.8647 18 6 4.2976 -8.0705 -0.6304 19 7 3.6277 -5.1268 1.1464 20 6 2.7700 -4.1181 1.1862 21 17 2.3286 -3.3974 2.7025 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.2054 -3.9160 -2.1291 26 1 5.2657 -7.0434 1.0166 27 1 5.9044 -5.7213 -1.6176 28 1 6.9943 -6.1274 -0.2548 29 1 7.1089 -8.4498 -0.8960 30 1 7.0827 -7.6311 -2.4928 31 1 5.2297 -9.5173 -1.9656 32 1 4.7173 -8.0003 -2.7667 33 1 4.3031 -8.8943 0.0834 34 1 3.2749 -7.8465 -0.9337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:37 Heat of formation + Delta-G solvation = 12.760121 kcal Electronic energy + Delta-G solvation = -17569.854645 eV Core-core repulsion = 14720.465924 eV Total energy + Delta-G solvation = -2849.388722 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77576 -37.88515 -36.16800 -34.06402 -33.06325 -32.02291 -29.46904 -28.68866 -26.73845 -24.09034 -23.83072 -21.53763 -20.66377 -19.89938 -17.52720 -16.80926 -16.46019 -15.54041 -14.92834 -14.69915 -14.53629 -13.70448 -13.41176 -13.31796 -13.07714 -12.41152 -11.89253 -11.65349 -11.57271 -11.30343 -11.15827 -11.11660 -11.07412 -10.86883 -10.65731 -10.63246 -10.53705 -10.36735 -9.96000 -9.69564 -9.56967 -8.89681 -8.48992 -8.33706 -6.14093 -4.18667 1.34886 1.44679 2.27417 3.27374 3.31820 3.35066 4.04389 4.16408 4.37769 4.51564 4.71219 4.77981 4.95927 5.17926 5.23901 5.41801 5.48871 5.54572 5.63100 5.66121 5.66979 5.87979 5.89303 5.95310 6.11416 6.17757 6.21394 6.34485 6.41410 6.76324 7.32751 7.34423 7.43151 7.78984 8.13058 8.43545 8.83185 9.45686 10.95858 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.005052 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.528012 B = 5540.863230 C = 5910.128477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.055 3.945 10 C -0.121 4.121 11 C 0.146 3.854 12 N -0.510 5.510 13 C 0.305 3.695 14 C -0.018 4.018 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.109 4.109 19 N -0.518 5.518 20 C 0.209 3.791 21 Cl -0.011 7.011 22 H 0.264 0.736 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.173 0.827 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -13.429 -1.438 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.017 3.983 10 C -0.126 4.126 11 C -0.020 4.020 12 N -0.223 5.223 13 C 0.037 3.963 14 C -0.038 4.038 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.147 4.147 19 N -0.234 5.234 20 C 0.037 3.963 21 Cl 0.017 6.983 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.190 0.810 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.529 -13.981 -1.281 16.427 hybrid contribution -0.269 1.886 0.301 1.929 sum 8.260 -12.095 -0.980 14.679 Atomic orbital electron populations 1.69930 1.05973 1.27157 1.49726 1.24921 0.94853 0.99109 0.94811 0.86606 0.79612 0.82756 0.78837 1.20115 1.21085 1.20064 1.20813 0.92714 0.89357 1.52139 0.92760 1.18351 0.91950 0.88331 0.99633 1.22277 0.99678 0.98765 0.91846 1.23205 0.91083 0.89329 0.98375 1.68013 1.10696 1.13740 1.29890 1.22691 0.95346 0.95564 0.82720 1.20515 0.92159 0.90038 1.01104 1.22438 0.95859 0.98217 0.98639 1.22478 0.97018 0.96256 1.00133 1.22314 0.95237 0.99818 0.98323 1.22118 0.99843 0.95708 0.97070 1.67499 1.14204 1.10163 1.31512 1.21950 0.93600 0.91952 0.88826 1.98400 1.90188 1.80371 1.29307 0.92594 0.93722 0.94466 0.80957 0.88835 0.90407 0.91622 0.91627 0.91525 0.91970 0.91153 0.91632 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.51 -13.58 9.09 -34.44 -0.31 -13.89 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.33 4.70 -29.03 -0.14 1.19 16 10 C -0.12 -2.55 5.11 -104.32 -0.53 -3.08 16 11 C 0.15 2.72 10.99 -17.22 -0.19 2.53 16 12 N -0.51 -9.02 9.42 -10.74 -0.10 -9.13 16 13 C 0.30 5.30 6.16 -157.21 -0.97 4.33 16 14 C -0.02 -0.24 3.29 -90.65 -0.30 -0.54 16 15 C -0.11 -1.36 6.33 -25.03 -0.16 -1.52 16 16 C -0.12 -1.16 6.91 -24.70 -0.17 -1.33 16 17 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 18 C -0.11 -1.27 6.35 -25.61 -0.16 -1.44 16 19 N -0.52 -10.02 10.31 -7.86 -0.08 -10.10 16 20 C 0.21 4.32 7.33 -17.08 -0.13 4.19 16 21 Cl -0.01 -0.23 27.75 -51.86 -1.44 -1.66 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.04 1.14 7.24 -51.93 -0.38 0.76 16 24 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 25 H 0.17 2.84 8.06 -52.49 -0.42 2.41 16 26 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 27 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.90 7.51 -51.93 -0.39 0.51 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -28.26 301.49 -9.18 -37.44 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.49 Total: -3.46 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.32 Total: -9.23 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.55 Total: -43.58 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.44 Total: -1.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.26 -9.18 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.200 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds