Wall clock time and date at job start Mon Mar 30 2020 08:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38519 * 120.80081 * 264.71776 * 10 9 7 12 12 N 1.32370 * 119.11872 * 179.76502 * 11 10 9 13 13 C 1.31801 * 120.85241 * 0.52288 * 12 11 10 14 14 C 1.50695 * 119.11694 * 179.70956 * 13 12 11 15 15 C 1.54262 * 110.03474 * 57.92245 * 14 13 12 16 16 C 1.54966 * 104.16266 * 217.13713 * 15 14 13 17 17 C 1.54891 * 102.77575 * 37.89114 * 16 15 14 18 18 C 1.53882 * 110.02965 * 300.71025 * 14 13 12 19 19 N 1.31776 * 121.76996 * 359.72271 * 13 12 11 20 20 C 1.32463 * 120.79605 * 0.02562 * 19 13 12 21 21 Cl 1.73595 * 120.46536 * 180.02562 * 20 19 13 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.08000 * 120.44637 * 359.97438 * 11 10 9 26 26 H 1.08996 * 110.02326 * 179.31757 * 14 13 12 27 27 H 1.09000 * 110.48955 * 335.78753 * 15 14 13 28 28 H 1.09003 * 110.48607 * 98.43088 * 15 14 13 29 29 H 1.08995 * 110.72253 * 279.57708 * 16 15 14 30 30 H 1.09005 * 110.76283 * 156.21872 * 16 15 14 31 31 H 1.08996 * 110.48483 * 203.40302 * 17 16 15 32 32 H 1.09003 * 110.60086 * 80.81696 * 17 16 15 33 33 H 1.09008 * 110.02760 * 238.56945 * 18 14 13 34 34 H 1.09000 * 110.03451 * 359.94931 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6088 -4.2544 -1.1862 12 7 3.4749 -5.2547 -1.1477 13 6 3.9677 -5.6783 -0.0011 14 6 4.9462 -6.8245 -0.0022 15 6 6.1686 -6.4749 -0.8757 16 6 6.5347 -7.8121 -1.5681 17 6 5.1480 -8.4351 -1.8647 18 6 4.2976 -8.0705 -0.6304 19 7 3.6277 -5.1268 1.1464 20 6 2.7700 -4.1181 1.1862 21 17 2.3286 -3.3974 2.7025 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.2054 -3.9160 -2.1291 26 1 5.2657 -7.0434 1.0166 27 1 5.9044 -5.7213 -1.6176 28 1 6.9943 -6.1274 -0.2548 29 1 7.1089 -8.4498 -0.8960 30 1 7.0827 -7.6311 -2.4928 31 1 5.2297 -9.5173 -1.9656 32 1 4.7173 -8.0003 -2.7667 33 1 4.3031 -8.8943 0.0834 34 1 3.2749 -7.8465 -0.9337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:36 Heat of formation + Delta-G solvation = -1.596917 kcal Electronic energy + Delta-G solvation = -17570.477213 eV Core-core repulsion = 14720.465924 eV Total energy + Delta-G solvation = -2850.011289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.24310 -38.92195 -37.72438 -35.86923 -34.60771 -33.77209 -30.81229 -29.57505 -28.35189 -25.63639 -25.50960 -23.19749 -21.48575 -21.04064 -19.00521 -18.55338 -18.10353 -16.73741 -16.52272 -16.08809 -15.84577 -15.15240 -15.06444 -14.35989 -14.27590 -14.18551 -13.54677 -13.35877 -13.17053 -12.69841 -12.60264 -12.37991 -12.33879 -12.12358 -11.95151 -11.88066 -11.69683 -11.59412 -11.41403 -11.35633 -11.29469 -10.62745 -10.35166 -9.97589 -8.20588 -6.31284 -0.21243 -0.07153 0.69328 1.41333 1.42335 1.50076 2.38801 2.61087 2.86953 3.12157 3.16703 3.61849 3.77091 3.78883 3.92525 4.11583 4.42677 4.54013 4.59311 4.63103 4.65182 4.76667 4.88181 4.98788 5.12636 5.19772 5.30710 5.31629 5.36698 5.42502 5.49173 5.56738 5.69538 5.81295 6.10624 6.76350 6.94552 7.36364 8.89185 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.005052 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.528012 B = 5540.863230 C = 5910.128477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.047 0.953 9 C 0.068 3.932 10 C -0.147 4.147 11 C 0.155 3.845 12 N -0.506 5.506 13 C 0.309 3.691 14 C -0.022 4.022 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.107 4.107 19 N -0.528 5.528 20 C 0.202 3.798 21 Cl -0.014 7.014 22 H 0.266 0.734 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.193 0.807 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.893 -14.615 -2.026 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.065 0.935 9 C 0.030 3.970 10 C -0.152 4.152 11 C -0.011 4.011 12 N -0.219 5.219 13 C 0.042 3.958 14 C -0.043 4.043 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.145 4.145 19 N -0.244 5.244 20 C 0.030 3.970 21 Cl 0.015 6.985 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.210 0.790 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.331 -15.179 -1.869 18.456 hybrid contribution -0.792 2.156 0.480 2.347 sum 9.539 -13.022 -1.388 16.202 Atomic orbital electron populations 1.70030 1.07269 1.27980 1.50762 1.25657 0.95576 1.02251 0.94543 0.85693 0.78529 0.79095 0.78955 1.19319 1.20520 1.19900 1.21040 0.92475 0.90686 1.51588 0.93492 1.18034 0.92058 0.88915 0.98022 1.22028 1.00758 0.99261 0.93117 1.23507 0.90420 0.88807 0.98357 1.68170 1.10479 1.13340 1.29915 1.23629 0.94633 0.95485 0.82065 1.20800 0.91930 0.89286 1.02235 1.22446 0.95271 0.99309 0.98145 1.22469 0.97023 0.94760 1.00736 1.22311 0.94940 1.01218 0.96887 1.22135 0.98844 0.95264 0.98267 1.67632 1.14325 1.10103 1.32340 1.22044 0.93875 0.92375 0.88704 1.98390 1.90264 1.80511 1.29366 0.92482 0.95740 0.95599 0.79039 0.88090 0.92404 0.90895 0.89765 0.90451 0.89735 0.92150 0.89716 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.53 13.29 21.45 0.28 -52.25 16 2 C 0.02 1.04 5.46 84.65 0.46 1.50 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.52 -27.86 9.09 25.60 0.23 -27.63 16 8 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 9 C 0.07 3.34 4.70 29.10 0.14 3.48 16 10 C -0.15 -6.24 5.11 -19.67 -0.10 -6.34 16 11 C 0.16 5.74 10.99 84.68 0.93 6.67 16 12 N -0.51 -17.45 9.42 -187.89 -1.77 -19.22 16 13 C 0.31 10.43 6.16 138.75 0.85 11.29 16 14 C -0.02 -0.55 3.29 -10.82 -0.04 -0.59 16 15 C -0.11 -2.48 6.33 31.69 0.20 -2.27 16 16 C -0.11 -1.77 6.91 31.91 0.22 -1.55 16 17 C -0.12 -1.96 6.83 31.67 0.22 -1.75 16 18 C -0.11 -2.24 6.35 31.32 0.20 -2.04 16 19 N -0.53 -20.14 10.31 -178.77 -1.84 -21.98 16 20 C 0.20 8.38 7.33 84.73 0.62 9.01 16 21 Cl -0.01 -0.56 27.75 -2.72 -0.08 -0.64 16 22 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.02 1.29 7.24 -2.39 -0.02 1.27 16 24 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 25 H 0.19 6.17 8.06 -2.91 -0.02 6.15 16 26 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 27 H 0.06 1.50 7.42 -2.39 -0.02 1.48 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.20 7.51 -2.39 -0.02 1.19 16 Total: -1.00 -59.98 301.49 3.66 -56.32 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.10 Total: 3.09 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 3.94 Total: -10.23 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -3.33 Total: -93.45 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -59.98 3.66 -56.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.726 kcal (2) G-P(sol) polarization free energy of solvation -59.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds