Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00049 * 2 1 4 4 C 1.38872 * 120.03021 * 359.97438 * 3 2 1 5 5 C 1.38604 * 120.01526 * 179.97438 * 4 3 2 6 6 C 1.39035 * 119.89451 * 359.91335 * 5 4 3 7 7 C 1.38666 * 119.94789 * 359.97438 * 6 5 4 8 8 C 1.38168 * 120.17169 * 0.23321 * 7 6 5 9 9 C 1.50703 * 119.98661 * 179.83318 * 8 7 6 10 10 C 1.50701 * 109.47600 * 264.83309 * 9 8 7 11 11 H 1.07998 * 119.99357 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00028 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00009 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99750 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46693 * 60.00561 * 14 12 10 16 16 H 1.48505 * 109.46918 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47065 * 300.00304 * 14 12 10 18 18 O 1.36240 * 120.73580 * 180.26330 * 6 5 4 19 19 C 1.43163 * 116.71396 * 342.83380 * 18 6 5 20 20 C 1.53475 * 108.24109 * 46.19099 * 19 18 6 21 21 O 1.36120 * 119.32473 * 179.86386 * 5 4 3 22 22 H 1.09004 * 109.47257 * 60.00125 * 1 2 3 23 23 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47212 * 300.00288 * 1 2 3 25 25 H 1.08000 * 119.99074 * 359.94588 * 4 3 2 26 26 H 1.08002 * 119.91219 * 179.87014 * 7 6 5 27 27 H 1.09008 * 109.46738 * 24.82877 * 9 8 7 28 28 H 1.08993 * 109.47255 * 144.82516 * 9 8 7 29 29 H 0.97002 * 119.99702 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.71555 * 286.50116 * 19 18 6 31 31 H 1.09004 * 109.70572 * 165.87266 * 19 18 6 32 32 H 1.09002 * 109.70891 * 180.51209 * 20 19 18 33 33 H 1.09000 * 109.71464 * 59.88154 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1952 2.6645 -0.0005 5 6 1.5073 4.0149 0.0000 6 6 2.8378 4.4186 0.0029 7 6 3.8490 3.4698 0.0058 8 6 3.5382 2.1236 0.0009 9 6 4.6406 1.0960 0.0003 10 6 4.9242 0.6642 -1.4154 11 1 4.3620 1.0909 -2.2329 12 6 5.9012 -0.2755 -1.6669 13 7 6.5861 -0.7946 -0.6714 14 14 6.2521 -0.8112 -3.4217 15 1 6.6715 0.3659 -4.2241 16 1 7.3385 -1.8237 -3.4223 17 1 5.0251 -1.4021 -4.0136 18 8 3.1641 5.7413 0.0089 19 6 2.1322 6.6604 -0.3656 20 6 0.8471 6.2681 0.3761 21 8 0.5012 4.9317 -0.0034 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.1622 2.3491 -0.0018 26 1 4.8823 3.7841 0.0059 27 1 5.5414 1.5293 0.4353 28 1 4.3323 0.2321 0.5889 29 1 7.2733 -1.4560 -0.8484 30 1 1.9661 6.6084 -1.4415 31 1 2.4231 7.6732 -0.0865 32 1 0.0415 6.9487 0.1008 33 1 1.0154 6.3129 1.4522 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -54.160884 kcal Electronic energy + Delta-G solvation = -17848.174106 eV Core-core repulsion = 14965.634427 eV Total energy + Delta-G solvation = -2882.539679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89199 -37.56298 -36.97089 -33.31167 -31.32580 -30.82559 -28.97474 -28.42802 -26.65119 -24.51011 -22.93541 -22.03357 -20.12899 -18.35750 -17.34009 -16.84405 -16.25040 -15.65457 -14.94413 -14.78940 -14.48023 -14.21460 -14.11343 -13.90798 -13.46251 -13.33308 -12.83196 -12.51849 -12.26267 -11.65628 -11.51155 -11.17287 -11.02723 -10.95973 -10.62542 -10.54133 -10.25071 -9.76326 -9.40346 -9.32321 -8.58510 -8.34447 -7.81144 -6.59058 -5.97041 -3.99999 1.65850 1.84895 2.12540 2.94285 3.28790 3.37885 3.41168 3.45159 3.53350 4.14774 4.33480 4.52087 4.82346 4.89626 4.95680 5.24616 5.35026 5.36820 5.37764 5.44754 5.56818 5.80254 5.89377 5.96174 6.20722 6.47482 6.58773 6.84791 7.05863 7.20620 7.56319 7.73414 7.76964 7.97356 8.34063 9.02149 9.62495 11.12532 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.006528 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.082271 B = 4288.085715 C = 5214.515839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 S -0.050 6.050 3 C -0.090 4.090 4 C -0.130 4.130 5 C 0.037 3.963 6 C 0.043 3.957 7 C -0.103 4.103 8 C -0.009 4.009 9 C 0.050 3.950 10 C -0.503 4.503 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 O -0.309 6.309 19 C 0.021 3.979 20 C 0.023 3.977 21 O -0.313 6.313 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.136 0.864 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 10.542 2.482 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.341 4.341 2 S 0.194 5.806 3 C -0.203 4.203 4 C -0.155 4.155 5 C -0.008 4.008 6 C -0.004 4.004 7 C -0.123 4.123 8 C -0.014 4.014 9 C 0.013 3.987 10 C -0.541 4.541 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.200 1.200 18 O -0.224 6.224 19 C -0.055 4.055 20 C -0.053 4.053 21 O -0.228 6.228 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.093 0.907 25 H 0.145 0.855 26 H 0.154 0.846 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.396 9.372 2.523 14.969 hybrid contribution -0.734 1.168 -1.014 1.712 sum -12.130 10.540 1.509 16.140 Atomic orbital electron populations 1.23798 0.99463 1.06166 1.04716 1.86279 1.00783 1.01697 1.91886 1.21373 0.95529 0.96674 1.06711 1.20217 0.98824 0.89269 1.07187 1.18465 0.85814 0.89337 1.07202 1.18885 0.92179 0.83456 1.05843 1.20342 0.98211 0.90395 1.03352 1.20203 0.93801 0.94357 0.93081 1.18384 0.90321 0.91583 0.98411 1.20871 1.18844 1.23021 0.91378 0.92519 1.24928 0.95902 0.96092 0.97034 1.69942 1.23464 1.29087 1.30803 0.86632 0.77938 0.78364 0.85000 1.20303 1.21300 1.20040 1.86322 1.37706 1.13488 1.84883 1.23524 0.88214 0.93811 0.99923 1.23521 0.98709 0.83284 0.99821 1.86239 1.33426 1.18115 1.85064 0.90455 0.88085 0.90656 0.85522 0.84572 0.94904 0.94015 0.92845 0.90898 0.86663 0.86737 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.15 101.05 0.92 -1.42 16 2 S -0.05 -0.96 20.84 -107.50 -2.24 -3.20 16 3 C -0.09 -1.84 6.10 -39.11 -0.24 -2.08 16 4 C -0.13 -2.37 9.28 -39.21 -0.36 -2.73 16 5 C 0.04 0.68 6.49 -39.15 -0.25 0.42 16 6 C 0.04 0.81 6.50 -39.13 -0.25 0.55 16 7 C -0.10 -2.12 9.58 -39.45 -0.38 -2.50 16 8 C -0.01 -0.20 5.09 -104.41 -0.53 -0.74 16 9 C 0.05 1.29 4.57 -29.03 -0.13 1.16 16 10 C -0.50 -14.03 9.08 -34.44 -0.31 -14.34 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 14 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 O -0.31 -5.07 10.42 -33.27 -0.35 -5.42 16 19 C 0.02 0.24 7.26 37.40 0.27 0.51 16 20 C 0.02 0.25 7.26 37.40 0.27 0.52 16 21 O -0.31 -4.85 10.42 -32.88 -0.34 -5.19 16 22 H 0.08 1.00 7.74 -51.92 -0.40 0.59 16 23 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 24 H 0.07 0.93 7.75 -51.92 -0.40 0.52 16 25 H 0.13 2.02 5.87 -52.49 -0.31 1.71 16 26 H 0.14 2.73 8.06 -52.49 -0.42 2.30 16 27 H 0.03 0.88 8.05 -51.92 -0.42 0.46 16 28 H 0.04 1.13 7.00 -51.93 -0.36 0.77 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 292.85 15.07 4.41 4.41 Total: -1.00 -31.47 292.85 -7.87 -39.34 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.97 Total: -2.09 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.10 Total: -18.98 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.69 Total: -10.61 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.24 Total: -3.20 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.47 -7.87 -39.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.820 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds