Wall clock time and date at job start Mon Mar 30 2020 08:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00010 * 2 1 4 4 H 1.48500 * 109.47110 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47455 * 30.00275 * 3 2 1 6 6 H 1.48503 * 109.47250 * 150.00573 * 3 2 1 7 7 C 1.37875 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00234 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46370 * 300.02502 * 9 7 2 11 11 C 1.53032 * 109.46293 * 180.02562 * 9 7 2 12 12 C 1.53124 * 109.28012 * 180.80757 * 11 9 7 13 13 H 1.09003 * 109.52311 * 297.69132 * 12 11 9 14 14 C 1.50702 * 109.52566 * 177.55932 * 12 11 9 15 15 N 1.31871 * 119.62295 * 299.72631 * 14 12 11 16 16 C 1.31857 * 121.73504 * 179.75456 * 15 14 12 17 17 C 1.38236 * 120.79124 * 0.52056 * 16 15 14 18 18 C 1.38607 * 119.17395 * 359.74906 * 17 16 15 19 19 C 1.38302 * 119.62628 * 119.99896 * 14 12 11 20 20 Cl 1.73606 * 120.42976 * 0.02562 * 19 14 12 21 21 C 1.53119 * 109.15841 * 57.65244 * 12 11 9 22 22 C 1.53040 * 109.28089 * 302.34776 * 21 12 11 23 23 N 1.46846 * 109.45995 * 60.00465 * 9 7 2 24 24 H 0.96995 * 119.99909 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.50710 * 300.74605 * 11 9 7 26 26 H 1.08996 * 109.50945 * 60.86782 * 11 9 7 27 27 H 1.07995 * 119.60676 * 180.26979 * 16 15 14 28 28 H 1.07995 * 120.41049 * 179.76414 * 17 16 15 29 29 H 1.08004 * 120.79338 * 179.97438 * 18 17 16 30 30 H 1.09004 * 109.50189 * 62.29271 * 21 12 11 31 31 H 1.08998 * 109.50338 * 182.40479 * 21 12 11 32 32 H 1.08996 * 109.46572 * 299.16374 * 22 21 12 33 33 H 1.09004 * 109.46207 * 179.19455 * 22 21 12 34 34 H 1.00904 * 111.00089 * 305.85757 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6244 -2.5568 0.8895 11 6 2.2456 -3.6622 -0.0005 12 6 1.4759 -4.9858 -0.0209 13 1 0.8704 -5.0689 0.8816 14 6 2.4500 -6.1340 -0.0815 15 7 3.2788 -6.2326 -1.1025 16 6 4.1511 -7.2170 -1.1952 17 6 4.2202 -8.1954 -0.2210 18 6 3.3617 -8.1291 0.8651 19 6 2.4608 -7.0756 0.9314 20 17 1.3607 -6.9421 2.2678 21 6 0.5675 -5.0198 -1.2530 22 6 -0.3786 -3.8174 -1.2167 23 7 0.4065 -2.5765 -1.1994 24 1 -0.4850 0.8400 0.0004 25 1 2.8814 -3.5974 -0.8835 26 1 2.8623 -3.6138 0.8969 27 1 4.8167 -7.2619 -2.0444 28 1 4.9344 -9.0010 -0.3051 29 1 3.3929 -8.8797 1.6412 30 1 1.1768 -4.9764 -2.1558 31 1 -0.0148 -5.9412 -1.2504 32 1 -0.9972 -3.8689 -0.3208 33 1 -1.0171 -3.8309 -2.1000 34 1 -0.1935 -1.7685 -1.2718 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260145396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:11 Heat of formation + Delta-G solvation = 17.423909 kcal Electronic energy + Delta-G solvation = -17998.172470 eV Core-core repulsion = 15148.985985 eV Total energy + Delta-G solvation = -2849.186485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38301 -37.44413 -36.58363 -33.48192 -32.35494 -31.78942 -29.81302 -29.27902 -25.22572 -24.15326 -23.44318 -21.63842 -20.88762 -18.67933 -17.18344 -16.55844 -16.31700 -15.55212 -14.99817 -14.38159 -14.22326 -13.80104 -13.44984 -13.40851 -12.65761 -12.55382 -12.26087 -12.14579 -11.97809 -11.74034 -11.27448 -10.90007 -10.79294 -10.48515 -10.33016 -10.11228 -9.83649 -9.67531 -9.53725 -9.16295 -8.99604 -8.63818 -8.51426 -6.78452 -6.04452 -4.06855 0.94840 1.14673 2.08223 3.33775 3.39957 3.43425 3.69611 4.36624 4.45441 4.62554 4.69759 4.91377 5.20982 5.27263 5.45529 5.54014 5.68681 5.80822 5.88886 6.05530 6.11482 6.31872 6.36932 6.48279 6.56102 6.65524 6.88931 6.93887 7.05934 7.07568 7.63479 7.94013 7.99608 8.25715 8.75294 9.05937 9.21356 9.60822 11.05785 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.005354 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.982646 B = 5228.447147 C = 5385.560629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.218 3.782 10 H -0.005 1.005 11 C -0.087 4.087 12 C -0.051 4.051 13 H 0.084 0.916 14 C 0.169 3.831 15 N -0.457 5.457 16 C 0.105 3.895 17 C -0.179 4.179 18 C -0.068 4.068 19 C -0.094 4.094 20 Cl -0.054 7.054 21 C -0.095 4.095 22 C 0.057 3.943 23 N -0.683 5.683 24 H 0.263 0.737 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.160 0.840 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.011 0.989 33 H 0.054 0.946 34 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -16.378 0.830 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.110 3.890 10 H 0.012 0.988 11 C -0.125 4.125 12 C -0.071 4.071 13 H 0.102 0.898 14 C 0.031 3.969 15 N -0.165 5.165 16 C -0.053 4.053 17 C -0.199 4.199 18 C -0.094 4.094 19 C -0.123 4.123 20 Cl -0.025 7.025 21 C -0.133 4.133 22 C -0.074 4.074 23 N -0.320 5.320 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.177 0.823 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.604 -15.850 -0.095 16.505 hybrid contribution -0.229 0.265 1.526 1.566 sum 4.375 -15.585 1.431 16.250 Atomic orbital electron populations 1.69673 1.06000 1.26926 1.51757 1.24995 0.94901 0.99282 0.94411 0.86505 0.79727 0.83059 0.78133 1.20552 1.21371 1.19982 1.21182 0.93127 0.90118 1.49557 0.92235 1.18971 0.90361 0.91992 0.87702 0.98781 1.21618 0.98416 0.91511 1.00955 1.20558 0.94221 0.92158 1.00118 0.89782 1.21572 0.93835 0.93982 0.87524 1.67733 1.03875 1.22289 1.22611 1.22950 0.95046 0.89388 0.97890 1.22078 1.00994 1.01499 0.95370 1.21470 0.93244 0.96371 0.98326 1.21975 0.97649 0.99377 0.93324 1.98367 1.61890 1.97601 1.44641 1.21497 0.97202 0.97028 0.97609 1.21778 0.94421 0.92780 0.98391 1.60775 1.25706 1.03119 1.42409 0.92702 0.91283 0.93605 0.82280 0.84301 0.84182 0.90670 0.93638 0.97062 0.92748 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 11.48 55.43 0.64 -24.94 16 2 C 0.06 1.80 5.32 -17.82 -0.09 1.71 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -14.01 8.76 -34.44 -0.30 -14.31 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 9 C 0.22 5.60 2.40 -68.88 -0.16 5.44 16 10 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 11 C -0.09 -1.92 4.52 -26.65 -0.12 -2.04 16 12 C -0.05 -0.97 2.40 -91.65 -0.22 -1.19 16 13 H 0.08 1.59 6.16 -51.93 -0.32 1.27 16 14 C 0.17 2.82 5.47 -82.55 -0.45 2.37 16 15 N -0.46 -7.39 9.72 -9.45 -0.09 -7.48 16 16 C 0.10 1.27 11.18 -17.54 -0.20 1.08 16 17 C -0.18 -1.81 10.11 -39.45 -0.40 -2.21 16 18 C -0.07 -0.76 9.98 -39.25 -0.39 -1.16 16 19 C -0.09 -1.35 6.34 -39.36 -0.25 -1.60 16 20 Cl -0.05 -0.75 27.04 -51.86 -1.40 -2.15 16 21 C -0.10 -1.77 5.29 -26.65 -0.14 -1.91 16 22 C 0.06 1.18 6.55 -3.83 -0.03 1.15 16 23 N -0.68 -16.85 6.49 -107.99 -0.70 -17.55 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.07 1.61 7.98 -51.93 -0.41 1.20 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.07 1.47 7.97 -51.93 -0.41 1.06 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.36 9.67 6.65 -39.29 -0.26 9.41 16 LS Contribution 293.62 15.07 4.42 4.42 Total: -1.00 -29.48 293.62 -9.24 -38.72 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.33 Total: 5.19 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.76 Total: -12.69 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.16 Total: -49.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.40 Total: -2.15 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.48 -9.24 -38.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.144 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds