Wall clock time and date at job start Mon Mar 30 2020 08:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00010 * 2 1 4 4 H 1.48500 * 109.47110 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47455 * 30.00275 * 3 2 1 6 6 H 1.48503 * 109.47250 * 150.00573 * 3 2 1 7 7 C 1.37875 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00234 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46370 * 300.02502 * 9 7 2 11 11 C 1.53032 * 109.46293 * 180.02562 * 9 7 2 12 12 C 1.53124 * 109.28012 * 180.80757 * 11 9 7 13 13 H 1.09003 * 109.52311 * 297.69132 * 12 11 9 14 14 C 1.50702 * 109.52566 * 177.55932 * 12 11 9 15 15 N 1.31871 * 119.62295 * 299.72631 * 14 12 11 16 16 C 1.31857 * 121.73504 * 179.75456 * 15 14 12 17 17 C 1.38236 * 120.79124 * 0.52056 * 16 15 14 18 18 C 1.38607 * 119.17395 * 359.74906 * 17 16 15 19 19 C 1.38302 * 119.62628 * 119.99896 * 14 12 11 20 20 Cl 1.73606 * 120.42976 * 0.02562 * 19 14 12 21 21 C 1.53119 * 109.15841 * 57.65244 * 12 11 9 22 22 C 1.53040 * 109.28089 * 302.34776 * 21 12 11 23 23 N 1.46846 * 109.45995 * 60.00465 * 9 7 2 24 24 H 0.96995 * 119.99909 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.50710 * 300.74605 * 11 9 7 26 26 H 1.08996 * 109.50945 * 60.86782 * 11 9 7 27 27 H 1.07995 * 119.60676 * 180.26979 * 16 15 14 28 28 H 1.07995 * 120.41049 * 179.76414 * 17 16 15 29 29 H 1.08004 * 120.79338 * 179.97438 * 18 17 16 30 30 H 1.09004 * 109.50189 * 62.29271 * 21 12 11 31 31 H 1.08998 * 109.50338 * 182.40479 * 21 12 11 32 32 H 1.08996 * 109.46572 * 299.16374 * 22 21 12 33 33 H 1.09004 * 109.46207 * 179.19455 * 22 21 12 34 34 H 1.00904 * 111.00089 * 305.85757 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6244 -2.5568 0.8895 11 6 2.2456 -3.6622 -0.0005 12 6 1.4759 -4.9858 -0.0209 13 1 0.8704 -5.0689 0.8816 14 6 2.4500 -6.1340 -0.0815 15 7 3.2788 -6.2326 -1.1025 16 6 4.1511 -7.2170 -1.1952 17 6 4.2202 -8.1954 -0.2210 18 6 3.3617 -8.1291 0.8651 19 6 2.4608 -7.0756 0.9314 20 17 1.3607 -6.9421 2.2678 21 6 0.5675 -5.0198 -1.2530 22 6 -0.3786 -3.8174 -1.2167 23 7 0.4065 -2.5765 -1.1994 24 1 -0.4850 0.8400 0.0004 25 1 2.8814 -3.5974 -0.8835 26 1 2.8623 -3.6138 0.8969 27 1 4.8167 -7.2619 -2.0444 28 1 4.9344 -9.0010 -0.3051 29 1 3.3929 -8.8797 1.6412 30 1 1.1768 -4.9764 -2.1558 31 1 -0.0148 -5.9412 -1.2504 32 1 -0.9972 -3.8689 -0.3208 33 1 -1.0171 -3.8309 -2.1000 34 1 -0.1935 -1.7685 -1.2718 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260145396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:11 Heat of formation + Delta-G solvation = -1.363681 kcal Electronic energy + Delta-G solvation = -17998.987161 eV Core-core repulsion = 15148.985985 eV Total energy + Delta-G solvation = -2850.001176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46545 -39.11294 -37.63596 -35.22102 -33.82912 -33.03369 -31.69056 -30.62465 -27.19973 -25.50814 -24.47483 -23.26665 -22.47618 -20.36621 -18.71609 -17.96104 -17.40179 -17.05864 -16.59001 -16.15447 -15.44136 -15.31261 -15.03492 -14.50333 -14.41232 -14.00816 -13.95179 -13.59774 -13.22329 -13.04325 -12.81275 -12.64765 -12.49201 -12.37366 -12.09381 -11.74284 -11.36764 -11.19033 -11.04205 -10.71886 -10.62972 -10.32119 -9.76257 -8.77713 -8.16580 -6.27947 -0.04327 0.20749 1.04719 1.42306 1.43981 1.53797 2.43133 2.69753 3.09134 3.26436 3.58504 3.85883 3.95389 4.02818 4.11481 4.24373 4.32320 4.44722 4.58837 4.68408 4.71488 4.85782 4.94200 4.99021 5.04093 5.11200 5.12511 5.25946 5.38323 5.56818 5.65488 5.80862 6.18829 6.65544 6.98382 6.99997 7.15129 7.43711 8.92285 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.005354 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.982646 B = 5228.447147 C = 5385.560629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.020 3.980 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.219 3.781 10 H -0.042 1.042 11 C -0.071 4.071 12 C -0.044 4.044 13 H 0.078 0.922 14 C 0.140 3.860 15 N -0.492 5.492 16 C 0.095 3.905 17 C -0.154 4.154 18 C -0.065 4.065 19 C -0.104 4.104 20 Cl -0.060 7.060 21 C -0.085 4.085 22 C 0.054 3.946 23 N -0.690 5.690 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.037 0.963 27 H 0.189 0.811 28 H 0.186 0.814 29 H 0.172 0.828 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -18.363 0.545 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.110 3.890 10 H -0.024 1.024 11 C -0.110 4.110 12 C -0.064 4.064 13 H 0.097 0.903 14 C 0.003 3.997 15 N -0.201 5.201 16 C -0.062 4.062 17 C -0.174 4.174 18 C -0.091 4.091 19 C -0.133 4.133 20 Cl -0.031 7.031 21 C -0.123 4.123 22 C -0.076 4.076 23 N -0.326 5.326 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.206 0.794 28 H 0.203 0.797 29 H 0.189 0.811 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.023 0.977 33 H 0.092 0.908 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.094 -17.856 -0.379 18.871 hybrid contribution -0.650 0.789 1.595 1.894 sum 5.444 -17.067 1.216 17.956 Atomic orbital electron populations 1.69784 1.07164 1.27806 1.51745 1.25760 0.95782 1.02507 0.93792 0.85486 0.78546 0.78868 0.78261 1.20023 1.20645 1.19535 1.21486 0.93080 0.91730 1.50518 0.92934 1.18879 0.90550 0.92895 0.86631 1.02445 1.21343 0.97446 0.92565 0.99647 1.20304 0.94576 0.91612 0.99874 0.90345 1.21068 0.94856 0.94382 0.89400 1.67618 1.05008 1.24418 1.23043 1.23548 0.94408 0.88822 0.99441 1.22570 1.00169 1.01280 0.93360 1.21907 0.92035 0.95733 0.99419 1.22069 0.98496 1.00074 0.92676 1.98362 1.62292 1.97673 1.44775 1.21399 0.96810 0.96904 0.97203 1.21920 0.94819 0.91934 0.98905 1.60754 1.26145 1.04080 1.41592 0.92482 0.92794 0.94441 0.79402 0.79715 0.81066 0.91552 0.91066 0.97729 0.90829 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.62 11.48 21.45 0.25 -53.37 16 2 C 0.02 1.16 5.32 84.65 0.45 1.61 16 3 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.53 -30.67 8.76 25.60 0.22 -30.44 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.22 11.79 2.40 44.19 0.11 11.89 16 10 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 11 C -0.07 -3.31 4.52 30.65 0.14 -3.17 16 12 C -0.04 -1.71 2.40 -11.46 -0.03 -1.74 16 13 H 0.08 3.06 6.16 -2.39 -0.01 3.04 16 14 C 0.14 4.59 5.47 42.57 0.23 4.83 16 15 N -0.49 -15.34 9.72 -183.80 -1.79 -17.13 16 16 C 0.10 2.02 11.18 84.69 0.95 2.97 16 17 C -0.15 -2.42 10.11 22.36 0.23 -2.19 16 18 C -0.06 -1.23 9.98 22.49 0.22 -1.01 16 19 C -0.10 -2.82 6.34 22.41 0.14 -2.68 16 20 Cl -0.06 -1.62 27.04 -2.72 -0.07 -1.69 16 21 C -0.08 -3.17 5.29 30.65 0.16 -3.01 16 22 C 0.05 2.28 6.55 86.33 0.57 2.85 16 23 N -0.69 -35.30 6.49 -495.56 -3.22 -38.52 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.05 2.62 7.98 -2.39 -0.02 2.60 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.07 2.60 7.97 -2.39 -0.02 2.58 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 34 H 0.35 19.27 6.65 -89.69 -0.60 18.67 16 Total: -1.00 -66.39 293.62 1.10 -65.29 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.51 Total: 18.83 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.39 Total: -20.10 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.76 Total: -109.02 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.69 kcal Total: -66.39 1.10 -65.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260145396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.927 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds