Wall clock time and date at job start Mon Mar 30 2020 08:01:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86794 * 120.00010 * 2 1
4 4 H 1.48500 * 109.47110 * 270.00183 * 3 2 1
5 5 H 1.48498 * 109.47455 * 30.00275 * 3 2 1
6 6 H 1.48503 * 109.47250 * 150.00573 * 3 2 1
7 7 C 1.37875 * 119.99880 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99972 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00234 * 359.97438 * 7 2 1
10 10 H 1.08999 * 109.46370 * 300.02502 * 9 7 2
11 11 C 1.53032 * 109.46293 * 180.02562 * 9 7 2
12 12 C 1.53124 * 109.28012 * 180.80757 * 11 9 7
13 13 H 1.09003 * 109.52311 * 297.69132 * 12 11 9
14 14 C 1.50702 * 109.52566 * 177.55932 * 12 11 9
15 15 N 1.31871 * 119.62295 * 299.72631 * 14 12 11
16 16 C 1.31857 * 121.73504 * 179.75456 * 15 14 12
17 17 C 1.38236 * 120.79124 * 0.52056 * 16 15 14
18 18 C 1.38607 * 119.17395 * 359.74906 * 17 16 15
19 19 C 1.38302 * 119.62628 * 119.99896 * 14 12 11
20 20 Cl 1.73606 * 120.42976 * 0.02562 * 19 14 12
21 21 C 1.53119 * 109.15841 * 57.65244 * 12 11 9
22 22 C 1.53040 * 109.28089 * 302.34776 * 21 12 11
23 23 N 1.46846 * 109.45995 * 60.00465 * 9 7 2
24 24 H 0.96995 * 119.99909 * 359.97438 * 1 2 3
25 25 H 1.08999 * 109.50710 * 300.74605 * 11 9 7
26 26 H 1.08996 * 109.50945 * 60.86782 * 11 9 7
27 27 H 1.07995 * 119.60676 * 180.26979 * 16 15 14
28 28 H 1.07995 * 120.41049 * 179.76414 * 17 16 15
29 29 H 1.08004 * 120.79338 * 179.97438 * 18 17 16
30 30 H 1.09004 * 109.50189 * 62.29271 * 21 12 11
31 31 H 1.08998 * 109.50338 * 182.40479 * 21 12 11
32 32 H 1.08996 * 109.46572 * 299.16374 * 22 21 12
33 33 H 1.09004 * 109.46207 * 179.19455 * 22 21 12
34 34 H 1.00904 * 111.00089 * 305.85757 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4401 0.6999
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 1 0.6244 -2.5568 0.8895
11 6 2.2456 -3.6622 -0.0005
12 6 1.4759 -4.9858 -0.0209
13 1 0.8704 -5.0689 0.8816
14 6 2.4500 -6.1340 -0.0815
15 7 3.2788 -6.2326 -1.1025
16 6 4.1511 -7.2170 -1.1952
17 6 4.2202 -8.1954 -0.2210
18 6 3.3617 -8.1291 0.8651
19 6 2.4608 -7.0756 0.9314
20 17 1.3607 -6.9421 2.2678
21 6 0.5675 -5.0198 -1.2530
22 6 -0.3786 -3.8174 -1.2167
23 7 0.4065 -2.5765 -1.1994
24 1 -0.4850 0.8400 0.0004
25 1 2.8814 -3.5974 -0.8835
26 1 2.8623 -3.6138 0.8969
27 1 4.8167 -7.2619 -2.0444
28 1 4.9344 -9.0010 -0.3051
29 1 3.3929 -8.8797 1.6412
30 1 1.1768 -4.9764 -2.1558
31 1 -0.0148 -5.9412 -1.2504
32 1 -0.9972 -3.8689 -0.3208
33 1 -1.0171 -3.8309 -2.1000
34 1 -0.1935 -1.7685 -1.2718
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260145396.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 08:01:11
Heat of formation + Delta-G solvation = -1.363681 kcal
Electronic energy + Delta-G solvation = -17998.987161 eV
Core-core repulsion = 15148.985985 eV
Total energy + Delta-G solvation = -2850.001176 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.088 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.46545 -39.11294 -37.63596 -35.22102 -33.82912 -33.03369 -31.69056 -30.62465
-27.19973 -25.50814 -24.47483 -23.26665 -22.47618 -20.36621 -18.71609 -17.96104
-17.40179 -17.05864 -16.59001 -16.15447 -15.44136 -15.31261 -15.03492 -14.50333
-14.41232 -14.00816 -13.95179 -13.59774 -13.22329 -13.04325 -12.81275 -12.64765
-12.49201 -12.37366 -12.09381 -11.74284 -11.36764 -11.19033 -11.04205 -10.71886
-10.62972 -10.32119 -9.76257 -8.77713 -8.16580 -6.27947 -0.04327 0.20749
1.04719 1.42306 1.43981 1.53797 2.43133 2.69753 3.09134 3.26436
3.58504 3.85883 3.95389 4.02818 4.11481 4.24373 4.32320 4.44722
4.58837 4.68408 4.71488 4.85782 4.94200 4.99021 5.04093 5.11200
5.12511 5.25946 5.38323 5.56818 5.65488 5.80862 6.18829 6.65544
6.98382 6.99997 7.15129 7.43711 8.92285
Molecular weight = 266.09amu
Principal moments of inertia in cm(-1)
A = 0.025682 B = 0.005354 C = 0.005198
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1089.982646 B = 5228.447147 C = 5385.560629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C 0.020 3.980
3 Si 0.963 3.037
4 H -0.275 1.275
5 H -0.281 1.281
6 H -0.271 1.271
7 C -0.530 4.530
8 H 0.052 0.948
9 C 0.219 3.781
10 H -0.042 1.042
11 C -0.071 4.071
12 C -0.044 4.044
13 H 0.078 0.922
14 C 0.140 3.860
15 N -0.492 5.492
16 C 0.095 3.905
17 C -0.154 4.154
18 C -0.065 4.065
19 C -0.104 4.104
20 Cl -0.060 7.060
21 C -0.085 4.085
22 C 0.054 3.946
23 N -0.690 5.690
24 H 0.266 0.734
25 H 0.053 0.947
26 H 0.037 0.963
27 H 0.189 0.811
28 H 0.186 0.814
29 H 0.172 0.828
30 H 0.066 0.934
31 H 0.071 0.929
32 H 0.005 0.995
33 H 0.073 0.927
34 H 0.348 0.652
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.881 -18.363 0.545 19.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.178 4.178
3 Si 0.788 3.212
4 H -0.200 1.200
5 H -0.206 1.206
6 H -0.195 1.195
7 C -0.568 4.568
8 H 0.071 0.929
9 C 0.110 3.890
10 H -0.024 1.024
11 C -0.110 4.110
12 C -0.064 4.064
13 H 0.097 0.903
14 C 0.003 3.997
15 N -0.201 5.201
16 C -0.062 4.062
17 C -0.174 4.174
18 C -0.091 4.091
19 C -0.133 4.133
20 Cl -0.031 7.031
21 C -0.123 4.123
22 C -0.076 4.076
23 N -0.326 5.326
24 H 0.075 0.925
25 H 0.072 0.928
26 H 0.056 0.944
27 H 0.206 0.794
28 H 0.203 0.797
29 H 0.189 0.811
30 H 0.084 0.916
31 H 0.089 0.911
32 H 0.023 0.977
33 H 0.092 0.908
34 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 6.094 -17.856 -0.379 18.871
hybrid contribution -0.650 0.789 1.595 1.894
sum 5.444 -17.067 1.216 17.956
Atomic orbital electron populations
1.69784 1.07164 1.27806 1.51745 1.25760 0.95782 1.02507 0.93792
0.85486 0.78546 0.78868 0.78261 1.20023 1.20645 1.19535 1.21486
0.93080 0.91730 1.50518 0.92934 1.18879 0.90550 0.92895 0.86631
1.02445 1.21343 0.97446 0.92565 0.99647 1.20304 0.94576 0.91612
0.99874 0.90345 1.21068 0.94856 0.94382 0.89400 1.67618 1.05008
1.24418 1.23043 1.23548 0.94408 0.88822 0.99441 1.22570 1.00169
1.01280 0.93360 1.21907 0.92035 0.95733 0.99419 1.22069 0.98496
1.00074 0.92676 1.98362 1.62292 1.97673 1.44775 1.21399 0.96810
0.96904 0.97203 1.21920 0.94819 0.91934 0.98905 1.60754 1.26145
1.04080 1.41592 0.92482 0.92794 0.94441 0.79402 0.79715 0.81066
0.91552 0.91066 0.97729 0.90829 0.82991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.62 11.48 21.45 0.25 -53.37 16
2 C 0.02 1.16 5.32 84.65 0.45 1.61 16
3 Si 0.96 44.67 29.54 68.60 2.03 46.69 16
4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16
7 C -0.53 -30.67 8.76 25.60 0.22 -30.44 16
8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16
9 C 0.22 11.79 2.40 44.19 0.11 11.89 16
10 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16
11 C -0.07 -3.31 4.52 30.65 0.14 -3.17 16
12 C -0.04 -1.71 2.40 -11.46 -0.03 -1.74 16
13 H 0.08 3.06 6.16 -2.39 -0.01 3.04 16
14 C 0.14 4.59 5.47 42.57 0.23 4.83 16
15 N -0.49 -15.34 9.72 -183.80 -1.79 -17.13 16
16 C 0.10 2.02 11.18 84.69 0.95 2.97 16
17 C -0.15 -2.42 10.11 22.36 0.23 -2.19 16
18 C -0.06 -1.23 9.98 22.49 0.22 -1.01 16
19 C -0.10 -2.82 6.34 22.41 0.14 -2.68 16
20 Cl -0.06 -1.62 27.04 -2.72 -0.07 -1.69 16
21 C -0.08 -3.17 5.29 30.65 0.16 -3.01 16
22 C 0.05 2.28 6.55 86.33 0.57 2.85 16
23 N -0.69 -35.30 6.49 -495.56 -3.22 -38.52 16
24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16
25 H 0.05 2.62 7.98 -2.39 -0.02 2.60 16
26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
27 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16
28 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16
29 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16
30 H 0.07 2.60 7.97 -2.39 -0.02 2.58 16
31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16
33 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16
34 H 0.35 19.27 6.65 -89.69 -0.60 18.67 16
Total: -1.00 -66.39 293.62 1.10 -65.29
By element:
Atomic # 1 Polarization: 18.32 SS G_CDS: 0.51 Total: 18.83 kcal
Atomic # 6 Polarization: -23.49 SS G_CDS: 3.39 Total: -20.10 kcal
Atomic # 7 Polarization: -104.26 SS G_CDS: -4.76 Total: -109.02 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal
Atomic # 17 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.69 kcal
Total: -66.39 1.10 -65.29 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260145396.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.927 kcal
(2) G-P(sol) polarization free energy of solvation -66.389 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.462 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds